HEADER DNA BINDING PROTEIN 14-JUN-14 4TR6 TITLE CRYSTAL STRUCTURE OF DNA POLYMERASE SLIDING CLAMP FROM BACILLUS TITLE 2 SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE III SUBUNIT BETA; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: DNAN, DNAG, BSU00020; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA POLYMERASE, SLIDING CLAMP, PROCESSIVITY, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.BURNOUF,V.OLIERIC,E.ENNIFAR,P.WOLFF REVDAT 2 19-NOV-14 4TR6 1 JRNL REVDAT 1 10-SEP-14 4TR6 0 JRNL AUTH P.WOLFF,I.AMAL,V.OLIERIC,O.CHALOIN,G.GYGLI,E.ENNIFAR, JRNL AUTH 2 B.LORBER,G.GUICHARD,J.WAGNER,A.DEJAEGERE,D.Y.BURNOUF JRNL TITL DIFFERENTIAL MODES OF PEPTIDE BINDING ONTO REPLICATIVE JRNL TITL 2 SLIDING CLAMPS FROM VARIOUS BACTERIAL ORIGINS. JRNL REF J.MED.CHEM. V. 57 7565 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25170813 JRNL DOI 10.1021/JM500467A REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 135877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 6815 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.07 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 9643 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2493 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9164 REMARK 3 BIN R VALUE (WORKING SET) : 0.2485 REMARK 3 BIN FREE R VALUE : 0.2647 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.97 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 479 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5739 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 763 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.41790 REMARK 3 B22 (A**2) : -1.26950 REMARK 3 B33 (A**2) : 4.68740 REMARK 3 B12 (A**2) : 4.01370 REMARK 3 B13 (A**2) : -1.89420 REMARK 3 B23 (A**2) : 0.39450 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.204 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.065 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.067 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.074 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.068 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 11829 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 21592 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2674 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 152 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1720 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 11829 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 4 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 885 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 13261 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.89 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.68 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -3.3235 -2.9900 -19.4267 REMARK 3 T TENSOR REMARK 3 T11: -0.0447 T22: -0.0420 REMARK 3 T33: -0.0234 T12: 0.0163 REMARK 3 T13: 0.0126 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.1913 L22: 0.4145 REMARK 3 L33: 0.8016 L12: 0.3424 REMARK 3 L13: -0.2470 L23: -0.1829 REMARK 3 S TENSOR REMARK 3 S11: -0.0883 S12: 0.0013 S13: -0.0312 REMARK 3 S21: -0.0549 S22: 0.0140 S23: 0.0074 REMARK 3 S31: 0.2221 S32: -0.0503 S33: 0.0743 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 4.1852 1.8617 19.6942 REMARK 3 T TENSOR REMARK 3 T11: -0.0478 T22: -0.0197 REMARK 3 T33: -0.0448 T12: 0.0095 REMARK 3 T13: -0.0043 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.2693 L22: 0.4811 REMARK 3 L33: 0.7530 L12: 0.3874 REMARK 3 L13: -0.1957 L23: -0.2691 REMARK 3 S TENSOR REMARK 3 S11: 0.0730 S12: -0.0073 S13: -0.0440 REMARK 3 S21: 0.1162 S22: -0.0566 S23: -0.0200 REMARK 3 S31: -0.0076 S32: 0.0349 S33: -0.0164 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00153 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 135911 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 42.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS TRIS PH 6.5 AND 28% PEG MME REMARK 280 2000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 25 OG REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 THR A 27 OG1 CG2 REMARK 470 THR A 28 OG1 CG2 REMARK 470 ILE A 29 CG1 CG2 CD1 REMARK 470 SER A 51 OG REMARK 470 LYS A 61 CE NZ REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 ARG A 82 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 103 CG CD OE1 NE2 REMARK 470 ARG A 109 CZ NH1 NH2 REMARK 470 LYS A 112 CD CE NZ REMARK 470 GLU A 124 CD OE1 OE2 REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 HIS A 134 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 192 CD CE NZ REMARK 470 ASP A 219 CG OD1 OD2 REMARK 470 GLN A 221 OE1 NE2 REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 LYS A 236 NZ REMARK 470 ARG A 245 NE CZ NH1 NH2 REMARK 470 SER A 256 OG REMARK 470 GLN A 260 CG CD OE1 NE2 REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 ARG A 285 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 ARG A 288 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 289 CG OD1 ND2 REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 GLU A 310 OE1 OE2 REMARK 470 GLU A 368 CG CD OE1 OE2 REMARK 470 ARG A 378 CG CD NE CZ NH1 NH2 REMARK 470 SER B 25 OG REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 42 CG OD1 OD2 REMARK 470 LYS B 61 CE NZ REMARK 470 GLU B 62 CD OE1 OE2 REMARK 470 ASP B 65 CG OD1 OD2 REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 ARG B 82 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 97 OE1 OE2 REMARK 470 GLU B 124 CG CD OE1 OE2 REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 LYS B 170 CE NZ REMARK 470 GLU B 172 CD OE1 OE2 REMARK 470 LYS B 190 CD CE NZ REMARK 470 LYS B 236 CE NZ REMARK 470 LYS B 238 CE NZ REMARK 470 ARG B 245 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 260 CG CD OE1 NE2 REMARK 470 LYS B 271 CD CE NZ REMARK 470 ARG B 285 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 286 CG CD OE1 OE2 REMARK 470 ARG B 288 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 289 CG OD1 ND2 REMARK 470 LYS B 297 CG CD CE NZ REMARK 470 GLU B 300 CG CD OE1 OE2 REMARK 470 GLU B 303 CG CD OE1 OE2 REMARK 470 GLU B 310 OE1 OE2 REMARK 470 GLU B 324 OE1 OE2 REMARK 470 LYS B 335 CD CE NZ REMARK 470 ARG B 350 CZ NH1 NH2 REMARK 470 ILE B 370 CD1 REMARK 470 ARG B 378 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 272 O HOH A 401 2.16 REMARK 500 O HOH B 789 O HOH B 811 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 51 -43.23 82.46 REMARK 500 ASP A 65 28.45 -143.75 REMARK 500 GLN A 101 -143.28 -117.38 REMARK 500 THR A 151 -40.42 -130.63 REMARK 500 SER A 183 -4.71 81.26 REMARK 500 SER A 183 -8.21 84.03 REMARK 500 ASP A 194 71.03 -102.16 REMARK 500 THR A 229 -168.55 -115.95 REMARK 500 GLU A 300 10.65 -149.51 REMARK 500 GLU A 310 -1.20 70.20 REMARK 500 HIS B 2 -119.47 167.29 REMARK 500 SER B 51 -22.40 86.68 REMARK 500 GLN B 101 -150.03 -116.68 REMARK 500 GLN B 130 76.17 -109.32 REMARK 500 THR B 151 -42.20 -133.99 REMARK 500 SER B 183 -9.52 80.87 REMARK 500 SER B 183 -13.44 84.13 REMARK 500 ASP B 194 74.89 -101.74 REMARK 500 ALA B 299 46.07 72.75 REMARK 500 GLU B 300 163.47 62.16 REMARK 500 GLU B 310 -7.72 75.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 715 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B 825 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 827 DISTANCE = 6.51 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 760 O REMARK 620 2 HOH B 788 O 81.6 REMARK 620 3 HOH B 635 O 88.4 86.9 REMARK 620 4 HOH B 851 O 95.7 170.8 84.2 REMARK 620 5 HOH B 759 O 174.1 93.6 87.8 88.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 401 DBREF 4TR6 A 3 380 UNP P05649 DPO3B_BACSU 1 378 DBREF 4TR6 B 3 380 UNP P05649 DPO3B_BACSU 1 378 SEQADV 4TR6 SER A 1 UNP P05649 EXPRESSION TAG SEQADV 4TR6 HIS A 2 UNP P05649 EXPRESSION TAG SEQADV 4TR6 SER B 1 UNP P05649 EXPRESSION TAG SEQADV 4TR6 HIS B 2 UNP P05649 EXPRESSION TAG SEQRES 1 A 380 SER HIS MET LYS PHE THR ILE GLN LYS ASP ARG LEU VAL SEQRES 2 A 380 GLU SER VAL GLN ASP VAL LEU LYS ALA VAL SER SER ARG SEQRES 3 A 380 THR THR ILE PRO ILE LEU THR GLY ILE LYS ILE VAL ALA SEQRES 4 A 380 SER ASP ASP GLY VAL SER PHE THR GLY SER ASP SER ASP SEQRES 5 A 380 ILE SER ILE GLU SER PHE ILE PRO LYS GLU GLU GLY ASP SEQRES 6 A 380 LYS GLU ILE VAL THR ILE GLU GLN PRO GLY SER ILE VAL SEQRES 7 A 380 LEU GLN ALA ARG PHE PHE SER GLU ILE VAL LYS LYS LEU SEQRES 8 A 380 PRO MET ALA THR VAL GLU ILE GLU VAL GLN ASN GLN TYR SEQRES 9 A 380 LEU THR ILE ILE ARG SER GLY LYS ALA GLU PHE ASN LEU SEQRES 10 A 380 ASN GLY LEU ASP ALA ASP GLU TYR PRO HIS LEU PRO GLN SEQRES 11 A 380 ILE GLU GLU HIS HIS ALA ILE GLN ILE PRO THR ASP LEU SEQRES 12 A 380 LEU LYS ASN LEU ILE ARG GLN THR VAL PHE ALA VAL SER SEQRES 13 A 380 THR SER GLU THR ARG PRO ILE LEU THR GLY VAL ASN TRP SEQRES 14 A 380 LYS VAL GLU GLN SER GLU LEU LEU CYS THR ALA THR ASP SEQRES 15 A 380 SER HIS ARG LEU ALA LEU ARG LYS ALA LYS LEU ASP ILE SEQRES 16 A 380 PRO GLU ASP ARG SER TYR ASN VAL VAL ILE PRO GLY LYS SEQRES 17 A 380 SER LEU THR GLU LEU SER LYS ILE LEU ASP ASP ASN GLN SEQRES 18 A 380 GLU LEU VAL ASP ILE VAL ILE THR GLU THR GLN VAL LEU SEQRES 19 A 380 PHE LYS ALA LYS ASN VAL LEU PHE PHE SER ARG LEU LEU SEQRES 20 A 380 ASP GLY ASN TYR PRO ASP THR THR SER LEU ILE PRO GLN SEQRES 21 A 380 ASP SER LYS THR GLU ILE ILE VAL ASN THR LYS GLU PHE SEQRES 22 A 380 LEU GLN ALA ILE ASP ARG ALA SER LEU LEU ALA ARG GLU SEQRES 23 A 380 GLY ARG ASN ASN VAL VAL LYS LEU SER ALA LYS PRO ALA SEQRES 24 A 380 GLU SER ILE GLU ILE SER SER ASN SER PRO GLU ILE GLY SEQRES 25 A 380 LYS VAL VAL GLU ALA ILE VAL ALA ASP GLN ILE GLU GLY SEQRES 26 A 380 GLU GLU LEU ASN ILE SER PHE SER PRO LYS TYR MET LEU SEQRES 27 A 380 ASP ALA LEU LYS VAL LEU GLU GLY ALA GLU ILE ARG VAL SEQRES 28 A 380 SER PHE THR GLY ALA MET ARG PRO PHE LEU ILE ARG THR SEQRES 29 A 380 PRO ASN ASP GLU THR ILE VAL GLN LEU ILE LEU PRO VAL SEQRES 30 A 380 ARG THR TYR SEQRES 1 B 380 SER HIS MET LYS PHE THR ILE GLN LYS ASP ARG LEU VAL SEQRES 2 B 380 GLU SER VAL GLN ASP VAL LEU LYS ALA VAL SER SER ARG SEQRES 3 B 380 THR THR ILE PRO ILE LEU THR GLY ILE LYS ILE VAL ALA SEQRES 4 B 380 SER ASP ASP GLY VAL SER PHE THR GLY SER ASP SER ASP SEQRES 5 B 380 ILE SER ILE GLU SER PHE ILE PRO LYS GLU GLU GLY ASP SEQRES 6 B 380 LYS GLU ILE VAL THR ILE GLU GLN PRO GLY SER ILE VAL SEQRES 7 B 380 LEU GLN ALA ARG PHE PHE SER GLU ILE VAL LYS LYS LEU SEQRES 8 B 380 PRO MET ALA THR VAL GLU ILE GLU VAL GLN ASN GLN TYR SEQRES 9 B 380 LEU THR ILE ILE ARG SER GLY LYS ALA GLU PHE ASN LEU SEQRES 10 B 380 ASN GLY LEU ASP ALA ASP GLU TYR PRO HIS LEU PRO GLN SEQRES 11 B 380 ILE GLU GLU HIS HIS ALA ILE GLN ILE PRO THR ASP LEU SEQRES 12 B 380 LEU LYS ASN LEU ILE ARG GLN THR VAL PHE ALA VAL SER SEQRES 13 B 380 THR SER GLU THR ARG PRO ILE LEU THR GLY VAL ASN TRP SEQRES 14 B 380 LYS VAL GLU GLN SER GLU LEU LEU CYS THR ALA THR ASP SEQRES 15 B 380 SER HIS ARG LEU ALA LEU ARG LYS ALA LYS LEU ASP ILE SEQRES 16 B 380 PRO GLU ASP ARG SER TYR ASN VAL VAL ILE PRO GLY LYS SEQRES 17 B 380 SER LEU THR GLU LEU SER LYS ILE LEU ASP ASP ASN GLN SEQRES 18 B 380 GLU LEU VAL ASP ILE VAL ILE THR GLU THR GLN VAL LEU SEQRES 19 B 380 PHE LYS ALA LYS ASN VAL LEU PHE PHE SER ARG LEU LEU SEQRES 20 B 380 ASP GLY ASN TYR PRO ASP THR THR SER LEU ILE PRO GLN SEQRES 21 B 380 ASP SER LYS THR GLU ILE ILE VAL ASN THR LYS GLU PHE SEQRES 22 B 380 LEU GLN ALA ILE ASP ARG ALA SER LEU LEU ALA ARG GLU SEQRES 23 B 380 GLY ARG ASN ASN VAL VAL LYS LEU SER ALA LYS PRO ALA SEQRES 24 B 380 GLU SER ILE GLU ILE SER SER ASN SER PRO GLU ILE GLY SEQRES 25 B 380 LYS VAL VAL GLU ALA ILE VAL ALA ASP GLN ILE GLU GLY SEQRES 26 B 380 GLU GLU LEU ASN ILE SER PHE SER PRO LYS TYR MET LEU SEQRES 27 B 380 ASP ALA LEU LYS VAL LEU GLU GLY ALA GLU ILE ARG VAL SEQRES 28 B 380 SER PHE THR GLY ALA MET ARG PRO PHE LEU ILE ARG THR SEQRES 29 B 380 PRO ASN ASP GLU THR ILE VAL GLN LEU ILE LEU PRO VAL SEQRES 30 B 380 ARG THR TYR HET NA B 401 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *763(H2 O) HELIX 1 AA1 LYS A 9 LYS A 21 1 13 HELIX 2 AA2 ILE A 29 LEU A 32 5 4 HELIX 3 AA3 ALA A 81 LYS A 90 1 10 HELIX 4 AA4 ASP A 121 TYR A 125 5 5 HELIX 5 AA5 THR A 141 GLN A 150 1 10 HELIX 6 AA6 THR A 151 VAL A 155 5 5 HELIX 7 AA7 ARG A 161 LEU A 164 5 4 HELIX 8 AA8 GLY A 207 LEU A 217 1 11 HELIX 9 AA9 THR A 270 SER A 281 1 12 HELIX 10 AB1 SER A 333 LEU A 344 1 12 HELIX 11 AB2 LYS B 9 LYS B 21 1 13 HELIX 12 AB3 ILE B 29 LEU B 32 5 4 HELIX 13 AB4 ALA B 81 LYS B 90 1 10 HELIX 14 AB5 ASP B 121 TYR B 125 5 5 HELIX 15 AB6 THR B 141 GLN B 150 1 10 HELIX 16 AB7 THR B 151 VAL B 155 5 5 HELIX 17 AB8 ARG B 161 LEU B 164 5 4 HELIX 18 AB9 GLY B 207 ILE B 216 1 10 HELIX 19 AC1 THR B 254 ILE B 258 5 5 HELIX 20 AC2 THR B 270 SER B 281 1 12 HELIX 21 AC3 LEU B 282 ALA B 284 5 3 HELIX 22 AC4 SER B 333 LYS B 342 1 10 SHEET 1 AA1 9 VAL A 69 GLN A 73 0 SHEET 2 AA1 9 LYS A 4 GLN A 8 -1 N THR A 6 O THR A 70 SHEET 3 AA1 9 THR A 95 VAL A 100 -1 O ILE A 98 N PHE A 5 SHEET 4 AA1 9 LEU A 105 SER A 110 -1 O ILE A 107 N GLU A 99 SHEET 5 AA1 9 ALA A 113 ASN A 118 -1 O PHE A 115 N ILE A 108 SHEET 6 AA1 9 GLY B 312 ILE B 318 -1 O LYS B 313 N ASN A 116 SHEET 7 AA1 9 ILE B 302 SER B 308 -1 N SER B 308 O GLY B 312 SHEET 8 AA1 9 VAL B 292 ALA B 296 -1 N LYS B 293 O SER B 305 SHEET 9 AA1 9 LEU B 328 PHE B 332 -1 O LEU B 328 N ALA B 296 SHEET 1 AA2 8 GLY A 75 GLN A 80 0 SHEET 2 AA2 8 GLY A 34 ALA A 39 -1 N ALA A 39 O GLY A 75 SHEET 3 AA2 8 GLY A 43 SER A 49 -1 O SER A 45 N VAL A 38 SHEET 4 AA2 8 ILE A 53 PRO A 60 -1 O ILE A 59 N VAL A 44 SHEET 5 AA2 8 VAL A 240 ARG A 245 -1 O PHE A 243 N SER A 54 SHEET 6 AA2 8 GLN A 232 ALA A 237 -1 N PHE A 235 O PHE A 242 SHEET 7 AA2 8 LEU A 223 ILE A 228 -1 N ASP A 225 O LYS A 236 SHEET 8 AA2 8 ILE A 137 PRO A 140 -1 N ILE A 137 O ILE A 226 SHEET 1 AA3 2 GLU A 62 GLU A 63 0 SHEET 2 AA3 2 LYS A 66 GLU A 67 -1 O LYS A 66 N GLU A 63 SHEET 1 AA4 9 TYR A 201 PRO A 206 0 SHEET 2 AA4 9 GLY A 166 GLU A 172 -1 N VAL A 167 O ILE A 205 SHEET 3 AA4 9 GLU A 175 THR A 181 -1 O THR A 179 N ASN A 168 SHEET 4 AA4 9 ARG A 185 LYS A 192 -1 O ALA A 191 N LEU A 176 SHEET 5 AA4 9 ILE A 370 ILE A 374 -1 O LEU A 373 N LEU A 186 SHEET 6 AA4 9 PHE A 360 ARG A 363 -1 N ILE A 362 O GLN A 372 SHEET 7 AA4 9 GLU A 348 PHE A 353 -1 N ARG A 350 O ARG A 363 SHEET 8 AA4 9 THR A 264 ASN A 269 -1 N THR A 264 O PHE A 353 SHEET 9 AA4 9 GLN A 322 GLY A 325 -1 O GLN A 322 N ILE A 267 SHEET 1 AA5 9 LEU A 328 PHE A 332 0 SHEET 2 AA5 9 VAL A 292 LYS A 297 -1 N LEU A 294 O ILE A 330 SHEET 3 AA5 9 SER A 301 SER A 308 -1 O SER A 305 N LYS A 293 SHEET 4 AA5 9 GLY A 312 VAL A 319 -1 O GLY A 312 N SER A 308 SHEET 5 AA5 9 ALA B 113 ASN B 118 -1 O GLU B 114 N VAL A 315 SHEET 6 AA5 9 LEU B 105 SER B 110 -1 N ILE B 108 O PHE B 115 SHEET 7 AA5 9 THR B 95 VAL B 100 -1 N GLU B 99 O ILE B 107 SHEET 8 AA5 9 LYS B 4 GLN B 8 -1 N ILE B 7 O VAL B 96 SHEET 9 AA5 9 VAL B 69 GLN B 73 -1 O THR B 70 N THR B 6 SHEET 1 AA6 8 GLY B 75 GLN B 80 0 SHEET 2 AA6 8 GLY B 34 SER B 40 -1 N ILE B 37 O ILE B 77 SHEET 3 AA6 8 GLY B 43 SER B 49 -1 O GLY B 43 N SER B 40 SHEET 4 AA6 8 ILE B 53 PRO B 60 -1 O ILE B 55 N GLY B 48 SHEET 5 AA6 8 VAL B 240 ARG B 245 -1 O PHE B 243 N SER B 54 SHEET 6 AA6 8 GLN B 232 ALA B 237 -1 N PHE B 235 O PHE B 242 SHEET 7 AA6 8 LEU B 223 ILE B 228 -1 N ASP B 225 O LYS B 236 SHEET 8 AA6 8 ALA B 136 PRO B 140 -1 N ILE B 137 O ILE B 226 SHEET 1 AA7 2 GLU B 62 GLU B 63 0 SHEET 2 AA7 2 LYS B 66 GLU B 67 -1 O LYS B 66 N GLU B 63 SHEET 1 AA8 9 TYR B 201 PRO B 206 0 SHEET 2 AA8 9 GLY B 166 GLU B 172 -1 N TRP B 169 O VAL B 203 SHEET 3 AA8 9 GLU B 175 THR B 181 -1 O LEU B 177 N LYS B 170 SHEET 4 AA8 9 ARG B 185 LYS B 192 -1 O ALA B 191 N LEU B 176 SHEET 5 AA8 9 ILE B 370 ILE B 374 -1 O LEU B 373 N LEU B 186 SHEET 6 AA8 9 PHE B 360 ARG B 363 -1 N ILE B 362 O GLN B 372 SHEET 7 AA8 9 GLU B 348 PHE B 353 -1 N ARG B 350 O ARG B 363 SHEET 8 AA8 9 THR B 264 ASN B 269 -1 N ILE B 266 O VAL B 351 SHEET 9 AA8 9 GLN B 322 GLY B 325 -1 O GLU B 324 N GLU B 265 LINK NA NA B 401 O HOH B 760 1555 1555 2.24 LINK NA NA B 401 O HOH B 788 1555 1555 2.36 LINK NA NA B 401 O HOH B 635 1555 1555 2.23 LINK NA NA B 401 O HOH B 851 1555 1555 2.24 LINK NA NA B 401 O HOH B 759 1555 1555 2.23 CISPEP 1 PRO A 298 ALA A 299 0 13.54 CISPEP 2 GLU B 286 GLY B 287 0 1.36 CISPEP 3 GLU B 300 SER B 301 0 -9.24 SITE 1 AC1 5 HOH B 635 HOH B 759 HOH B 760 HOH B 788 SITE 2 AC1 5 HOH B 851 CRYST1 43.220 68.330 85.310 65.77 82.84 86.79 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023137 -0.001298 -0.002604 0.00000 SCALE2 0.000000 0.014658 -0.006536 0.00000 SCALE3 0.000000 0.000000 0.012935 0.00000