HEADER DNA BINDING PROTEIN 14-JUN-14 4TR7 TITLE CRYSTAL STRUCTURE OF DNA POLYMERASE SLIDING CLAMP FROM MYCOBATERIUM TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE III SUBUNIT BETA; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83331; SOURCE 4 STRAIN: CDC 1551 / OSHKOSH; SOURCE 5 GENE: DNAN, MT0002; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SLIDING CLAMP, PROCESSIVITY, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.OLIERIC,D.BURNOUF,E.ENNIFAR,P.WOLFF REVDAT 3 08-MAY-24 4TR7 1 REMARK REVDAT 2 19-NOV-14 4TR7 1 JRNL REVDAT 1 10-SEP-14 4TR7 0 JRNL AUTH P.WOLFF,I.AMAL,V.OLIERIC,O.CHALOIN,G.GYGLI,E.ENNIFAR, JRNL AUTH 2 B.LORBER,G.GUICHARD,J.WAGNER,A.DEJAEGERE,D.Y.BURNOUF JRNL TITL DIFFERENTIAL MODES OF PEPTIDE BINDING ONTO REPLICATIVE JRNL TITL 2 SLIDING CLAMPS FROM VARIOUS BACTERIAL ORIGINS. JRNL REF J.MED.CHEM. V. 57 7565 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25170813 JRNL DOI 10.1021/JM500467A REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 42529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2152 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.35 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.15 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2736 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2409 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2587 REMARK 3 BIN R VALUE (WORKING SET) : 0.2371 REMARK 3 BIN FREE R VALUE : 0.3022 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.45 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 149 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5262 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 217 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -22.85950 REMARK 3 B22 (A**2) : 11.33460 REMARK 3 B33 (A**2) : 11.52490 REMARK 3 B12 (A**2) : -9.17790 REMARK 3 B13 (A**2) : 3.19400 REMARK 3 B23 (A**2) : 3.72720 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.343 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.227 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.190 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 10532 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 19103 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2243 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 90 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1578 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 10532 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 758 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 11133 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.16 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.32 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.88 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -5.9972 16.0366 -11.1738 REMARK 3 T TENSOR REMARK 3 T11: -0.0195 T22: -0.0913 REMARK 3 T33: -0.0921 T12: 0.0650 REMARK 3 T13: 0.0012 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: -0.0102 L22: 1.9615 REMARK 3 L33: 1.5952 L12: 0.0280 REMARK 3 L13: -0.0302 L23: 1.5626 REMARK 3 S TENSOR REMARK 3 S11: 0.0644 S12: 0.0142 S13: -0.0227 REMARK 3 S21: -0.4393 S22: -0.0967 S23: 0.0030 REMARK 3 S31: -0.3998 S32: -0.1128 S33: 0.0323 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 5.7943 -15.5005 11.1381 REMARK 3 T TENSOR REMARK 3 T11: -0.0411 T22: -0.0885 REMARK 3 T33: -0.0867 T12: -0.0022 REMARK 3 T13: 0.0065 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.0858 L22: 1.5926 REMARK 3 L33: 1.4201 L12: -0.1840 REMARK 3 L13: 0.2096 L23: 1.2306 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: 0.0579 S13: 0.0100 REMARK 3 S21: 0.2318 S22: 0.1419 S23: -0.1244 REMARK 3 S31: 0.2312 S32: 0.1996 S33: -0.1576 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TR7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202136. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42571 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 36.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.930 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE TRIHYDRATE PH 7.0 REMARK 280 AND 20% PEG 3350, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 ASP A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 THR A 6 REMARK 465 THR A 7 REMARK 465 ARG A 8 REMARK 465 VAL A 9 REMARK 465 LEU A 34 REMARK 465 PRO A 35 REMARK 465 ALA A 36 REMARK 465 ARG A 37 REMARK 465 PRO A 38 REMARK 465 ALA A 39 REMARK 465 VAL A 40 REMARK 465 ALA A 65A REMARK 465 ASP A 160 REMARK 465 SER A 198 REMARK 465 ILE A 220 REMARK 465 GLY A 230 REMARK 465 THR A 231 REMARK 465 GLY A 232 REMARK 465 PRO A 233 REMARK 465 ASP A 372 REMARK 465 LEU A 401 REMARK 465 PRO A 402 REMARK 465 GLY A 403 REMARK 465 MET B 2 REMARK 465 ASP B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 THR B 6 REMARK 465 THR B 7 REMARK 465 ARG B 8 REMARK 465 VAL B 9 REMARK 465 ASP B 52 REMARK 465 ALA B 65A REMARK 465 THR B 231 REMARK 465 GLY B 232 REMARK 465 PRO B 233 REMARK 465 GLY B 234 REMARK 465 VAL B 235 REMARK 465 GLY B 236 REMARK 465 LYS B 237 REMARK 465 ASP B 238 REMARK 465 SER B 370 REMARK 465 GLY B 371 REMARK 465 ASP B 372 REMARK 465 ASP B 373 REMARK 465 ARG B 374 REMARK 465 PRO B 375 REMARK 465 VAL B 376 REMARK 465 ALA B 377 REMARK 465 GLY B 378 REMARK 465 LEU B 379 REMARK 465 ASN B 380 REMARK 465 LEU B 401 REMARK 465 PRO B 402 REMARK 465 GLY B 403 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 32 CD CE NZ REMARK 470 ASN A 33 CG OD1 ND2 REMARK 470 VAL A 42 CG1 CG2 REMARK 470 LEU A 43 CG CD1 CD2 REMARK 470 SER A 51 OG REMARK 470 ASN A 53 CG OD1 ND2 REMARK 470 TYR A 62 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 SER A 65 OG REMARK 470 ARG A 85 NE CZ NH1 NH2 REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 ASP A 126 CG OD1 OD2 REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 ASP A 159 CG OD1 OD2 REMARK 470 LEU A 162 CG CD1 CD2 REMARK 470 LEU A 173 CG CD1 CD2 REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 ASP A 200 CG OD1 OD2 REMARK 470 ILE A 201 CG1 CG2 CD1 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 SER A 223 OG REMARK 470 ARG A 226 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 235 CG1 CG2 REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 ASP A 238 CG OD1 OD2 REMARK 470 ASN A 246 CG OD1 ND2 REMARK 470 ARG A 253 NE CZ NH1 NH2 REMARK 470 ASP A 256 CG OD1 OD2 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 ARG A 294 CG CD NE CZ NH1 NH2 REMARK 470 SER A 370 OG REMARK 470 ASP A 373 CG OD1 OD2 REMARK 470 ARG A 374 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 400 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 33 CG OD1 ND2 REMARK 470 ARG B 37 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 38 CG CD REMARK 470 VAL B 40 CG1 CG2 REMARK 470 LEU B 43 CG CD1 CD2 REMARK 470 SER B 51 OG REMARK 470 ASN B 53 CG OD1 ND2 REMARK 470 TYR B 62 CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 63 CG CD OE1 OE2 REMARK 470 SER B 65 OG REMARK 470 ARG B 85 NE CZ NH1 NH2 REMARK 470 ARG B 92 NE CZ NH1 NH2 REMARK 470 LYS B 97 CG CD CE NZ REMARK 470 GLU B 125 CG CD OE1 OE2 REMARK 470 ASP B 126 CG OD1 OD2 REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 GLU B 143 CG CD OE1 OE2 REMARK 470 LEU B 162 CG CD1 CD2 REMARK 470 LEU B 173 CG CD1 CD2 REMARK 470 GLU B 175 CG CD OE1 OE2 REMARK 470 SER B 197 OG REMARK 470 SER B 198 OG REMARK 470 ASP B 200 CG OD1 OD2 REMARK 470 ILE B 201 CG1 CG2 CD1 REMARK 470 GLU B 202 CG CD OE1 OE2 REMARK 470 LYS B 210 CG CD CE NZ REMARK 470 GLU B 214 CG CD OE1 OE2 REMARK 470 LYS B 217 CG CD CE NZ REMARK 470 ILE B 220 CG1 CG2 CD1 REMARK 470 SER B 223 OG REMARK 470 ARG B 226 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 253 NE CZ NH1 NH2 REMARK 470 ASP B 256 CG OD1 OD2 REMARK 470 GLU B 258 CG CD OE1 OE2 REMARK 470 LYS B 261 CD CE NZ REMARK 470 GLN B 264 CD OE1 NE2 REMARK 470 ARG B 294 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 382 CG OD1 ND2 REMARK 470 SER B 389 OG REMARK 470 ARG B 400 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER B 22 O HOH B 525 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 375 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 14 121.95 -39.00 REMARK 500 ASP A 52 -73.12 -132.61 REMARK 500 ASP A 61 -139.46 -166.85 REMARK 500 CYS A 112 108.36 -161.09 REMARK 500 ARG A 184 -12.30 81.29 REMARK 500 ASP A 200 5.60 88.64 REMARK 500 ASP A 224 143.30 -37.51 REMARK 500 LYS A 237 -80.98 -176.16 REMARK 500 THR A 358 -80.75 -120.31 REMARK 500 PRO A 375 10.36 -41.12 REMARK 500 VAL A 376 -49.13 63.34 REMARK 500 ALA A 377 -89.09 -80.14 REMARK 500 ASP B 61 -167.09 174.18 REMARK 500 PRO B 134 -178.79 -64.30 REMARK 500 ARG B 184 -17.67 86.58 REMARK 500 ASP B 200 -16.47 90.68 REMARK 500 ILE B 220 81.34 -46.58 REMARK 500 SER B 223 120.49 83.37 REMARK 500 ASP B 256 72.21 -103.23 REMARK 500 THR B 358 -100.59 -122.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG B 37 13.01 REMARK 500 REMARK 500 REMARK: NULL DBREF 4TR7 A 2 403 UNP P9WNU0 DPO3B_MYCTO 1 402 DBREF 4TR7 B 2 403 UNP P9WNU0 DPO3B_MYCTO 1 402 SEQRES 1 A 402 MET ASP ALA ALA THR THR ARG VAL GLY LEU THR ASP LEU SEQRES 2 A 402 THR PHE ARG LEU LEU ARG GLU SER PHE ALA ASP ALA VAL SEQRES 3 A 402 SER TRP VAL ALA LYS ASN LEU PRO ALA ARG PRO ALA VAL SEQRES 4 A 402 PRO VAL LEU SER GLY VAL LEU LEU THR GLY SER ASP ASN SEQRES 5 A 402 GLY LEU THR ILE SER GLY PHE ASP TYR GLU VAL SER ALA SEQRES 6 A 402 GLU ALA GLN VAL GLY ALA GLU ILE VAL SER PRO GLY SER SEQRES 7 A 402 VAL LEU VAL SER GLY ARG LEU LEU SER ASP ILE THR ARG SEQRES 8 A 402 ALA LEU PRO ASN LYS PRO VAL ASP VAL HIS VAL GLU GLY SEQRES 9 A 402 ASN ARG VAL ALA LEU THR CYS GLY ASN ALA ARG PHE SER SEQRES 10 A 402 LEU PRO THR MET PRO VAL GLU ASP TYR PRO THR LEU PRO SEQRES 11 A 402 THR LEU PRO GLU GLU THR GLY LEU LEU PRO ALA GLU LEU SEQRES 12 A 402 PHE ALA GLU ALA ILE SER GLN VAL ALA ILE ALA ALA GLY SEQRES 13 A 402 ARG ASP ASP THR LEU PRO MET LEU THR GLY ILE ARG VAL SEQRES 14 A 402 GLU ILE LEU GLY GLU THR VAL VAL LEU ALA ALA THR ASP SEQRES 15 A 402 ARG PHE ARG LEU ALA VAL ARG GLU LEU LYS TRP SER ALA SEQRES 16 A 402 SER SER PRO ASP ILE GLU ALA ALA VAL LEU VAL PRO ALA SEQRES 17 A 402 LYS THR LEU ALA GLU ALA ALA LYS ALA GLY ILE GLY GLY SEQRES 18 A 402 SER ASP VAL ARG LEU SER LEU GLY THR GLY PRO GLY VAL SEQRES 19 A 402 GLY LYS ASP GLY LEU LEU GLY ILE SER GLY ASN GLY LYS SEQRES 20 A 402 ARG SER THR THR ARG LEU LEU ASP ALA GLU PHE PRO LYS SEQRES 21 A 402 PHE ARG GLN LEU LEU PRO THR GLU HIS THR ALA VAL ALA SEQRES 22 A 402 THR MET ASP VAL ALA GLU LEU ILE GLU ALA ILE LYS LEU SEQRES 23 A 402 VAL ALA LEU VAL ALA ASP ARG GLY ALA GLN VAL ARG MET SEQRES 24 A 402 GLU PHE ALA ASP GLY SER VAL ARG LEU SER ALA GLY ALA SEQRES 25 A 402 ASP ASP VAL GLY ARG ALA GLU GLU ASP LEU VAL VAL ASP SEQRES 26 A 402 TYR ALA GLY GLU PRO LEU THR ILE ALA PHE ASN PRO THR SEQRES 27 A 402 TYR LEU THR ASP GLY LEU SER SER LEU ARG SER GLU ARG SEQRES 28 A 402 VAL SER PHE GLY PHE THR THR ALA GLY LYS PRO ALA LEU SEQRES 29 A 402 LEU ARG PRO VAL SER GLY ASP ASP ARG PRO VAL ALA GLY SEQRES 30 A 402 LEU ASN GLY ASN GLY PRO PHE PRO ALA VAL SER THR ASP SEQRES 31 A 402 TYR VAL TYR LEU LEU MET PRO VAL ARG LEU PRO GLY SEQRES 1 B 402 MET ASP ALA ALA THR THR ARG VAL GLY LEU THR ASP LEU SEQRES 2 B 402 THR PHE ARG LEU LEU ARG GLU SER PHE ALA ASP ALA VAL SEQRES 3 B 402 SER TRP VAL ALA LYS ASN LEU PRO ALA ARG PRO ALA VAL SEQRES 4 B 402 PRO VAL LEU SER GLY VAL LEU LEU THR GLY SER ASP ASN SEQRES 5 B 402 GLY LEU THR ILE SER GLY PHE ASP TYR GLU VAL SER ALA SEQRES 6 B 402 GLU ALA GLN VAL GLY ALA GLU ILE VAL SER PRO GLY SER SEQRES 7 B 402 VAL LEU VAL SER GLY ARG LEU LEU SER ASP ILE THR ARG SEQRES 8 B 402 ALA LEU PRO ASN LYS PRO VAL ASP VAL HIS VAL GLU GLY SEQRES 9 B 402 ASN ARG VAL ALA LEU THR CYS GLY ASN ALA ARG PHE SER SEQRES 10 B 402 LEU PRO THR MET PRO VAL GLU ASP TYR PRO THR LEU PRO SEQRES 11 B 402 THR LEU PRO GLU GLU THR GLY LEU LEU PRO ALA GLU LEU SEQRES 12 B 402 PHE ALA GLU ALA ILE SER GLN VAL ALA ILE ALA ALA GLY SEQRES 13 B 402 ARG ASP ASP THR LEU PRO MET LEU THR GLY ILE ARG VAL SEQRES 14 B 402 GLU ILE LEU GLY GLU THR VAL VAL LEU ALA ALA THR ASP SEQRES 15 B 402 ARG PHE ARG LEU ALA VAL ARG GLU LEU LYS TRP SER ALA SEQRES 16 B 402 SER SER PRO ASP ILE GLU ALA ALA VAL LEU VAL PRO ALA SEQRES 17 B 402 LYS THR LEU ALA GLU ALA ALA LYS ALA GLY ILE GLY GLY SEQRES 18 B 402 SER ASP VAL ARG LEU SER LEU GLY THR GLY PRO GLY VAL SEQRES 19 B 402 GLY LYS ASP GLY LEU LEU GLY ILE SER GLY ASN GLY LYS SEQRES 20 B 402 ARG SER THR THR ARG LEU LEU ASP ALA GLU PHE PRO LYS SEQRES 21 B 402 PHE ARG GLN LEU LEU PRO THR GLU HIS THR ALA VAL ALA SEQRES 22 B 402 THR MET ASP VAL ALA GLU LEU ILE GLU ALA ILE LYS LEU SEQRES 23 B 402 VAL ALA LEU VAL ALA ASP ARG GLY ALA GLN VAL ARG MET SEQRES 24 B 402 GLU PHE ALA ASP GLY SER VAL ARG LEU SER ALA GLY ALA SEQRES 25 B 402 ASP ASP VAL GLY ARG ALA GLU GLU ASP LEU VAL VAL ASP SEQRES 26 B 402 TYR ALA GLY GLU PRO LEU THR ILE ALA PHE ASN PRO THR SEQRES 27 B 402 TYR LEU THR ASP GLY LEU SER SER LEU ARG SER GLU ARG SEQRES 28 B 402 VAL SER PHE GLY PHE THR THR ALA GLY LYS PRO ALA LEU SEQRES 29 B 402 LEU ARG PRO VAL SER GLY ASP ASP ARG PRO VAL ALA GLY SEQRES 30 B 402 LEU ASN GLY ASN GLY PRO PHE PRO ALA VAL SER THR ASP SEQRES 31 B 402 TYR VAL TYR LEU LEU MET PRO VAL ARG LEU PRO GLY FORMUL 3 HOH *217(H2 O) HELIX 1 AA1 ARG A 20 LYS A 32 1 13 HELIX 2 AA2 PRO A 41 LEU A 43 5 3 HELIX 3 AA3 GLY A 84 LEU A 94 1 11 HELIX 4 AA4 PRO A 123 TYR A 127 5 5 HELIX 5 AA5 PRO A 141 ILE A 154 1 14 HELIX 6 AA6 LEU A 162 LEU A 165 5 4 HELIX 7 AA7 ALA A 209 ALA A 218 1 10 HELIX 8 AA8 PHE A 262 LEU A 266 5 5 HELIX 9 AA9 VAL A 278 LEU A 290 1 13 HELIX 10 AB1 VAL A 291 ALA A 296 5 6 HELIX 11 AB2 ASN A 337 SER A 347 1 11 HELIX 12 AB3 ARG B 20 LYS B 32 1 13 HELIX 13 AB4 VAL B 40 LEU B 43 5 4 HELIX 14 AB5 GLY B 84 LEU B 94 1 11 HELIX 15 AB6 PRO B 123 TYR B 127 5 5 HELIX 16 AB7 PRO B 141 ILE B 154 1 14 HELIX 17 AB8 LEU B 162 LEU B 165 5 4 HELIX 18 AB9 ALA B 209 GLY B 219 1 11 HELIX 19 AC1 LYS B 261 LEU B 266 5 6 HELIX 20 AC2 VAL B 278 ALA B 289 1 12 HELIX 21 AC3 LEU B 290 ALA B 296 5 7 HELIX 22 AC4 ASN B 337 ARG B 349 1 13 SHEET 1 AA1 9 GLU A 73 SER A 76 0 SHEET 2 AA1 9 THR A 15 LEU A 19 -1 N ARG A 17 O GLU A 73 SHEET 3 AA1 9 PRO A 98 GLU A 104 -1 O VAL A 99 N LEU A 18 SHEET 4 AA1 9 ARG A 107 CYS A 112 -1 O ARG A 107 N GLU A 104 SHEET 5 AA1 9 ALA A 115 PRO A 120 -1 O PHE A 117 N LEU A 110 SHEET 6 AA1 9 GLY B 317 VAL B 324 -1 O GLU B 320 N ARG A 116 SHEET 7 AA1 9 SER B 306 ALA B 313 -1 N LEU B 309 O GLU B 321 SHEET 8 AA1 9 VAL B 298 ALA B 303 -1 N ARG B 299 O SER B 310 SHEET 9 AA1 9 LEU B 332 PHE B 336 -1 O LEU B 332 N PHE B 302 SHEET 1 AA2 9 GLY A 78 SER A 83 0 SHEET 2 AA2 9 GLY A 45 GLY A 50 -1 N VAL A 46 O VAL A 82 SHEET 3 AA2 9 GLY A 54 GLY A 59 -1 O THR A 56 N THR A 49 SHEET 4 AA2 9 GLU A 63 GLY A 70 -1 O VAL A 69 N LEU A 55 SHEET 5 AA2 9 LYS A 248 ARG A 253 -1 O ARG A 249 N GLU A 66 SHEET 6 AA2 9 LEU A 240 GLY A 245 -1 N ILE A 243 O SER A 250 SHEET 7 AA2 9 VAL A 225 SER A 228 -1 N ARG A 226 O SER A 244 SHEET 8 AA2 9 GLU A 136 LEU A 140 -1 N GLY A 138 O LEU A 227 SHEET 9 AA2 9 SER A 195 ALA A 196 -1 O SER A 195 N LEU A 139 SHEET 1 AA3 9 GLU A 202 PRO A 208 0 SHEET 2 AA3 9 GLY A 167 LEU A 173 -1 N ILE A 172 O ALA A 203 SHEET 3 AA3 9 THR A 176 THR A 182 -1 O ALA A 180 N ARG A 169 SHEET 4 AA3 9 ARG A 186 LYS A 193 -1 O ARG A 190 N LEU A 179 SHEET 5 AA3 9 TYR A 392 LEU A 396 -1 O LEU A 395 N LEU A 187 SHEET 6 AA3 9 ALA A 364 VAL A 369 -1 N LEU A 366 O TYR A 394 SHEET 7 AA3 9 ARG A 352 PHE A 357 -1 N SER A 354 O ARG A 367 SHEET 8 AA3 9 ALA A 272 ASP A 277 -1 N ALA A 274 O PHE A 355 SHEET 9 AA3 9 ASP A 326 ALA A 328 -1 O ALA A 328 N VAL A 273 SHEET 1 AA4 2 GLU A 269 HIS A 270 0 SHEET 2 AA4 2 PHE A 385 PRO A 386 -1 O PHE A 385 N HIS A 270 SHEET 1 AA5 9 LEU A 332 PHE A 336 0 SHEET 2 AA5 9 VAL A 298 ALA A 303 -1 N MET A 300 O ILE A 334 SHEET 3 AA5 9 SER A 306 ALA A 313 -1 O SER A 310 N ARG A 299 SHEET 4 AA5 9 GLY A 317 VAL A 324 -1 O GLU A 321 N LEU A 309 SHEET 5 AA5 9 ALA B 115 PRO B 120 -1 O ARG B 116 N GLU A 320 SHEET 6 AA5 9 ARG B 107 CYS B 112 -1 N LEU B 110 O PHE B 117 SHEET 7 AA5 9 PRO B 98 GLU B 104 -1 N GLU B 104 O ARG B 107 SHEET 8 AA5 9 THR B 15 LEU B 19 -1 N LEU B 18 O VAL B 99 SHEET 9 AA5 9 GLU B 73 SER B 76 -1 O GLU B 73 N ARG B 17 SHEET 1 AA6 9 GLY B 78 SER B 83 0 SHEET 2 AA6 9 GLY B 45 GLY B 50 -1 N VAL B 46 O VAL B 82 SHEET 3 AA6 9 LEU B 55 GLY B 59 -1 O THR B 56 N THR B 49 SHEET 4 AA6 9 GLU B 63 VAL B 69 -1 O ALA B 67 N ILE B 57 SHEET 5 AA6 9 LYS B 248 ARG B 253 -1 O ARG B 249 N GLU B 66 SHEET 6 AA6 9 LEU B 240 GLY B 245 -1 N ILE B 243 O SER B 250 SHEET 7 AA6 9 VAL B 225 SER B 228 -1 N SER B 228 O GLY B 242 SHEET 8 AA6 9 GLU B 136 LEU B 140 -1 N GLY B 138 O LEU B 227 SHEET 9 AA6 9 SER B 195 ALA B 196 -1 O SER B 195 N LEU B 139 SHEET 1 AA7 9 GLU B 202 PRO B 208 0 SHEET 2 AA7 9 GLY B 167 LEU B 173 -1 N ILE B 172 O ALA B 203 SHEET 3 AA7 9 THR B 176 THR B 182 -1 O ALA B 180 N ARG B 169 SHEET 4 AA7 9 ARG B 186 LYS B 193 -1 O ARG B 190 N LEU B 179 SHEET 5 AA7 9 TYR B 392 LEU B 396 -1 O LEU B 395 N LEU B 187 SHEET 6 AA7 9 ALA B 364 VAL B 369 -1 N ALA B 364 O LEU B 396 SHEET 7 AA7 9 ARG B 352 PHE B 357 -1 N GLY B 356 O LEU B 365 SHEET 8 AA7 9 ALA B 272 ASP B 277 -1 N ALA B 274 O PHE B 355 SHEET 9 AA7 9 ASP B 326 ALA B 328 -1 O ALA B 328 N VAL B 273 SHEET 1 AA8 2 GLU B 269 HIS B 270 0 SHEET 2 AA8 2 PHE B 385 PRO B 386 -1 O PHE B 385 N HIS B 270 CISPEP 1 PRO A 199 ASP A 200 0 -1.39 CISPEP 2 GLY A 221 GLY A 222 0 -1.82 CISPEP 3 ASP A 238 GLY A 239 0 0.15 CISPEP 4 GLY A 378 LEU A 379 0 9.46 CISPEP 5 SER B 197 SER B 198 0 1.29 CISPEP 6 GLY B 221 GLY B 222 0 9.40 CRYST1 40.490 83.650 84.030 63.58 86.84 85.20 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024697 -0.002074 -0.000497 0.00000 SCALE2 0.000000 0.011997 -0.005921 0.00000 SCALE3 0.000000 0.000000 0.013291 0.00000