HEADER OXIDOREDUCTASE 17-JUN-14 4TRI TITLE X-RAY CRYSTAL STRUCTURE OF CYP142A2 FROM MYCOBACTERIUM SMEGMATIS, TITLE 2 COMPLEXED WITH CHOLESTEROL SULFATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: P450 HEME-THIOLATE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: MSMEG_5918; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCWORI KEYWDS CYTOCHROME P450, CHOLESTEROL SULFATE, LIGAND BOUND, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.MADRONA,P.ORTIZ DE MONTELLANO REVDAT 6 27-DEC-23 4TRI 1 REMARK REVDAT 5 11-DEC-19 4TRI 1 REMARK REVDAT 4 06-SEP-17 4TRI 1 SOURCE JRNL REMARK REVDAT 3 19-NOV-14 4TRI 1 JRNL REVDAT 2 24-SEP-14 4TRI 1 JRNL REVDAT 1 17-SEP-14 4TRI 0 JRNL AUTH D.J.FRANK,Y.MADRONA,P.R.ORTIZ DE MONTELLANO JRNL TITL CHOLESTEROL ESTER OXIDATION BY MYCOBACTERIAL CYTOCHROME JRNL TITL 2 P450. JRNL REF J.BIOL.CHEM. V. 289 30417 2014 JRNL REFN ESSN 1083-351X JRNL PMID 25210044 JRNL DOI 10.1074/JBC.M114.602771 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 55965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2788 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0585 - 5.4095 0.96 2928 131 0.1524 0.1855 REMARK 3 2 5.4095 - 4.2981 0.97 2804 152 0.1287 0.1354 REMARK 3 3 4.2981 - 3.7561 0.96 2777 145 0.1372 0.1704 REMARK 3 4 3.7561 - 3.4133 0.95 2684 147 0.1504 0.2162 REMARK 3 5 3.4133 - 3.1689 0.95 2722 141 0.1729 0.2168 REMARK 3 6 3.1689 - 2.9823 0.96 2698 144 0.1721 0.2256 REMARK 3 7 2.9823 - 2.8331 0.95 2676 135 0.1776 0.2196 REMARK 3 8 2.8331 - 2.7098 0.95 2693 158 0.1751 0.2246 REMARK 3 9 2.7098 - 2.6056 0.95 2675 120 0.1781 0.2486 REMARK 3 10 2.6056 - 2.5157 0.95 2647 154 0.1715 0.2367 REMARK 3 11 2.5157 - 2.4371 0.94 2623 149 0.1825 0.2688 REMARK 3 12 2.4371 - 2.3675 0.94 2653 121 0.1724 0.2603 REMARK 3 13 2.3675 - 2.3052 0.94 2649 150 0.1634 0.2357 REMARK 3 14 2.3052 - 2.2490 0.94 2588 168 0.1755 0.2697 REMARK 3 15 2.2490 - 2.1979 0.94 2571 147 0.1785 0.2258 REMARK 3 16 2.1979 - 2.1511 0.93 2613 145 0.1815 0.2639 REMARK 3 17 2.1511 - 2.1081 0.93 2610 110 0.1890 0.2893 REMARK 3 18 2.1081 - 2.0683 0.93 2633 117 0.1971 0.2649 REMARK 3 19 2.0683 - 2.0314 0.93 2567 131 0.2152 0.3299 REMARK 3 20 2.0314 - 1.9970 0.85 2366 123 0.2124 0.2826 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6610 REMARK 3 ANGLE : 1.165 9009 REMARK 3 CHIRALITY : 0.043 994 REMARK 3 PLANARITY : 0.005 1177 REMARK 3 DIHEDRAL : 13.312 2463 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TRI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53177 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-28% PEG 3350, 50MM NACL, 10% REMARK 280 GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.72750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.94400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.94400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.72750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLN A 3 REMARK 465 MET A 4 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 465 MET B 1 REMARK 465 HIS B 402 REMARK 465 HIS B 403 REMARK 465 HIS B 404 REMARK 465 HIS B 405 REMARK 465 HIS B 406 REMARK 465 HIS B 407 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 5 CG CD1 CD2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 ARG A 299 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 622 O HOH B 655 1.99 REMARK 500 O HOH B 655 O HOH B 666 2.13 REMARK 500 NH2 ARG B 354 O HOH B 868 2.16 REMARK 500 O HOH B 785 O HOH B 819 2.16 REMARK 500 O HOH B 829 O HOH B 843 2.17 REMARK 500 OD2 ASP B 220 O HOH B 601 2.17 REMARK 500 O HOH A 799 O HOH A 929 2.18 REMARK 500 O HOH A 737 O HOH A 792 2.18 REMARK 500 O HOH A 875 O HOH A 910 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 101 OD2 ASP B 202 3655 2.16 REMARK 500 O HOH A 637 O HOH B 658 2574 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 34 76.45 -158.54 REMARK 500 ILE A 132 -60.80 -132.41 REMARK 500 THR A 237 -71.04 -133.20 REMARK 500 SER A 278 66.50 31.21 REMARK 500 ASN A 329 115.39 -163.72 REMARK 500 SER A 332 41.82 -95.29 REMARK 500 PHE A 338 146.97 -171.24 REMARK 500 CYS A 343 118.51 -39.13 REMARK 500 PHE A 382 -81.41 -122.28 REMARK 500 MET A 389 80.01 -165.52 REMARK 500 LEU A 400 -62.50 -101.63 REMARK 500 HIS A 404 13.60 127.75 REMARK 500 GLN B 3 -159.67 -74.94 REMARK 500 GLU B 34 73.64 -155.21 REMARK 500 ILE B 132 -62.46 -129.96 REMARK 500 SER B 167 143.71 -171.15 REMARK 500 THR B 237 -71.05 -132.58 REMARK 500 SER B 278 64.15 34.79 REMARK 500 PHE B 338 144.00 -176.78 REMARK 500 LEU B 364 61.27 -119.09 REMARK 500 PHE B 382 -74.08 -116.40 REMARK 500 MET B 389 79.84 -155.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 403 HIS A 404 146.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 927 DISTANCE = 5.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 343 SG REMARK 620 2 HEM A 501 NA 105.1 REMARK 620 3 HEM A 501 NB 90.8 89.7 REMARK 620 4 HEM A 501 NC 88.3 166.5 89.6 REMARK 620 5 HEM A 501 ND 103.5 87.2 165.7 90.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 343 SG REMARK 620 2 HEM B 502 NA 104.1 REMARK 620 3 HEM B 502 NB 88.7 88.0 REMARK 620 4 HEM B 502 NC 90.8 165.1 90.4 REMARK 620 5 HEM B 502 ND 106.1 89.3 165.1 88.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C3S A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C3S B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 DBREF 4TRI A 1 401 UNP A0R4Q6 A0R4Q6_MYCS2 1 401 DBREF 4TRI B 1 401 UNP A0R4Q6 A0R4Q6_MYCS2 1 401 SEQADV 4TRI HIS A 402 UNP A0R4Q6 EXPRESSION TAG SEQADV 4TRI HIS A 403 UNP A0R4Q6 EXPRESSION TAG SEQADV 4TRI HIS A 404 UNP A0R4Q6 EXPRESSION TAG SEQADV 4TRI HIS A 405 UNP A0R4Q6 EXPRESSION TAG SEQADV 4TRI HIS A 406 UNP A0R4Q6 EXPRESSION TAG SEQADV 4TRI HIS A 407 UNP A0R4Q6 EXPRESSION TAG SEQADV 4TRI HIS B 402 UNP A0R4Q6 EXPRESSION TAG SEQADV 4TRI HIS B 403 UNP A0R4Q6 EXPRESSION TAG SEQADV 4TRI HIS B 404 UNP A0R4Q6 EXPRESSION TAG SEQADV 4TRI HIS B 405 UNP A0R4Q6 EXPRESSION TAG SEQADV 4TRI HIS B 406 UNP A0R4Q6 EXPRESSION TAG SEQADV 4TRI HIS B 407 UNP A0R4Q6 EXPRESSION TAG SEQRES 1 A 407 MET THR GLN MET LEU THR ARG PRO ASP VAL ASP LEU VAL SEQRES 2 A 407 ASN GLY MET PHE TYR ALA ASP GLY GLY ALA ARG GLU ALA SEQRES 3 A 407 TYR ARG TRP MET ARG ALA ASN GLU PRO VAL PHE ARG ASP SEQRES 4 A 407 ARG ASN GLY LEU ALA ALA ALA THR THR TYR GLN ALA VAL SEQRES 5 A 407 LEU ASP ALA GLU ARG ASN PRO GLU LEU PHE SER SER THR SEQRES 6 A 407 GLY GLY ILE ARG PRO ASP GLN PRO GLY MET PRO TYR MET SEQRES 7 A 407 ILE ASP MET ASP ASP PRO GLN HIS LEU LEU ARG ARG LYS SEQRES 8 A 407 LEU VAL ASN ALA GLY PHE THR ARG LYS ARG VAL MET ASP SEQRES 9 A 407 LYS VAL ASP SER ILE GLY ARG LEU CYS ASP THR LEU ILE SEQRES 10 A 407 ASP ALA VAL CYS GLU ARG GLY GLU CYS ASP PHE VAL ARG SEQRES 11 A 407 ASP ILE ALA ALA PRO LEU PRO MET ALA VAL ILE GLY ASP SEQRES 12 A 407 MET LEU GLY VAL LEU PRO THR GLU ARG ASP MET LEU LEU SEQRES 13 A 407 LYS TRP SER ASP ASP LEU VAL CYS GLY LEU SER SER HIS SEQRES 14 A 407 VAL ASP GLU ALA ALA ILE GLN LYS LEU MET ASP THR PHE SEQRES 15 A 407 ALA ALA TYR THR GLU PHE THR LYS ASP VAL ILE THR LYS SEQRES 16 A 407 ARG ARG ALA GLU PRO THR ASP ASP LEU PHE SER VAL LEU SEQRES 17 A 407 VAL ASN SER GLU VAL GLU GLY GLN ARG MET SER ASP ASP SEQRES 18 A 407 GLU ILE VAL PHE GLU THR LEU LEU ILE LEU ILE GLY GLY SEQRES 19 A 407 ASP GLU THR THR ARG HIS THR LEU SER GLY GLY THR GLU SEQRES 20 A 407 GLN LEU LEU ARG HIS ARG ASP GLN TRP ASP ALA LEU VAL SEQRES 21 A 407 ALA ASP VAL ASP LEU LEU PRO GLY ALA ILE GLU GLU MET SEQRES 22 A 407 LEU ARG TRP THR SER PRO VAL LYS ASN MET CYS ARG THR SEQRES 23 A 407 LEU THR ALA ASP THR VAL PHE HIS GLY THR GLU LEU ARG SEQRES 24 A 407 ALA GLY GLU LYS ILE MET LEU MET PHE GLU SER ALA ASN SEQRES 25 A 407 PHE ASP GLU SER VAL PHE GLY ASP PRO ASP ASN PHE ARG SEQRES 26 A 407 ILE ASP ARG ASN PRO ASN SER HIS VAL ALA PHE GLY PHE SEQRES 27 A 407 GLY THR HIS PHE CYS LEU GLY ASN GLN LEU ALA ARG LEU SEQRES 28 A 407 GLU LEU ARG LEU MET THR GLU ARG VAL LEU ARG ARG LEU SEQRES 29 A 407 PRO ASP LEU ARG LEU ALA ASP ASP ALA PRO VAL PRO LEU SEQRES 30 A 407 ARG PRO ALA ASN PHE VAL SER GLY PRO GLU SER MET PRO SEQRES 31 A 407 VAL VAL PHE THR PRO SER ALA PRO VAL LEU ALA HIS HIS SEQRES 32 A 407 HIS HIS HIS HIS SEQRES 1 B 407 MET THR GLN MET LEU THR ARG PRO ASP VAL ASP LEU VAL SEQRES 2 B 407 ASN GLY MET PHE TYR ALA ASP GLY GLY ALA ARG GLU ALA SEQRES 3 B 407 TYR ARG TRP MET ARG ALA ASN GLU PRO VAL PHE ARG ASP SEQRES 4 B 407 ARG ASN GLY LEU ALA ALA ALA THR THR TYR GLN ALA VAL SEQRES 5 B 407 LEU ASP ALA GLU ARG ASN PRO GLU LEU PHE SER SER THR SEQRES 6 B 407 GLY GLY ILE ARG PRO ASP GLN PRO GLY MET PRO TYR MET SEQRES 7 B 407 ILE ASP MET ASP ASP PRO GLN HIS LEU LEU ARG ARG LYS SEQRES 8 B 407 LEU VAL ASN ALA GLY PHE THR ARG LYS ARG VAL MET ASP SEQRES 9 B 407 LYS VAL ASP SER ILE GLY ARG LEU CYS ASP THR LEU ILE SEQRES 10 B 407 ASP ALA VAL CYS GLU ARG GLY GLU CYS ASP PHE VAL ARG SEQRES 11 B 407 ASP ILE ALA ALA PRO LEU PRO MET ALA VAL ILE GLY ASP SEQRES 12 B 407 MET LEU GLY VAL LEU PRO THR GLU ARG ASP MET LEU LEU SEQRES 13 B 407 LYS TRP SER ASP ASP LEU VAL CYS GLY LEU SER SER HIS SEQRES 14 B 407 VAL ASP GLU ALA ALA ILE GLN LYS LEU MET ASP THR PHE SEQRES 15 B 407 ALA ALA TYR THR GLU PHE THR LYS ASP VAL ILE THR LYS SEQRES 16 B 407 ARG ARG ALA GLU PRO THR ASP ASP LEU PHE SER VAL LEU SEQRES 17 B 407 VAL ASN SER GLU VAL GLU GLY GLN ARG MET SER ASP ASP SEQRES 18 B 407 GLU ILE VAL PHE GLU THR LEU LEU ILE LEU ILE GLY GLY SEQRES 19 B 407 ASP GLU THR THR ARG HIS THR LEU SER GLY GLY THR GLU SEQRES 20 B 407 GLN LEU LEU ARG HIS ARG ASP GLN TRP ASP ALA LEU VAL SEQRES 21 B 407 ALA ASP VAL ASP LEU LEU PRO GLY ALA ILE GLU GLU MET SEQRES 22 B 407 LEU ARG TRP THR SER PRO VAL LYS ASN MET CYS ARG THR SEQRES 23 B 407 LEU THR ALA ASP THR VAL PHE HIS GLY THR GLU LEU ARG SEQRES 24 B 407 ALA GLY GLU LYS ILE MET LEU MET PHE GLU SER ALA ASN SEQRES 25 B 407 PHE ASP GLU SER VAL PHE GLY ASP PRO ASP ASN PHE ARG SEQRES 26 B 407 ILE ASP ARG ASN PRO ASN SER HIS VAL ALA PHE GLY PHE SEQRES 27 B 407 GLY THR HIS PHE CYS LEU GLY ASN GLN LEU ALA ARG LEU SEQRES 28 B 407 GLU LEU ARG LEU MET THR GLU ARG VAL LEU ARG ARG LEU SEQRES 29 B 407 PRO ASP LEU ARG LEU ALA ASP ASP ALA PRO VAL PRO LEU SEQRES 30 B 407 ARG PRO ALA ASN PHE VAL SER GLY PRO GLU SER MET PRO SEQRES 31 B 407 VAL VAL PHE THR PRO SER ALA PRO VAL LEU ALA HIS HIS SEQRES 32 B 407 HIS HIS HIS HIS HET HEM A 501 43 HET C3S A 502 32 HET GOL A 503 6 HET C3S B 501 32 HET HEM B 502 43 HET GOL B 503 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM C3S CHOLEST-5-EN-3-YL HYDROGEN SULFATE HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN C3S CHOLESTEROL-SULFATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 C3S 2(C27 H46 O4 S) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 9 HOH *718(H2 O) HELIX 1 AA1 ASN A 14 ALA A 19 5 6 HELIX 2 AA2 GLY A 22 GLU A 34 1 13 HELIX 3 AA3 THR A 48 ASN A 58 1 11 HELIX 4 AA4 TYR A 77 MET A 81 5 5 HELIX 5 AA5 PRO A 84 ASN A 94 1 11 HELIX 6 AA6 ALA A 95 PHE A 97 5 3 HELIX 7 AA7 THR A 98 ASP A 104 1 7 HELIX 8 AA8 LYS A 105 CYS A 121 1 17 HELIX 9 AA9 PHE A 128 ILE A 132 1 5 HELIX 10 AB1 ALA A 134 LEU A 145 1 12 HELIX 11 AB2 LEU A 148 THR A 150 5 3 HELIX 12 AB3 GLU A 151 GLY A 165 1 15 HELIX 13 AB4 ASP A 171 GLU A 199 1 29 HELIX 14 AB5 ASP A 203 ASN A 210 1 8 HELIX 15 AB6 SER A 219 GLU A 236 1 18 HELIX 16 AB7 THR A 237 HIS A 252 1 16 HELIX 17 AB8 HIS A 252 ASP A 262 1 11 HELIX 18 AB9 LEU A 265 SER A 278 1 14 HELIX 19 AC1 MET A 307 PHE A 313 1 7 HELIX 20 AC2 ASP A 314 GLY A 319 1 6 HELIX 21 AC3 PHE A 338 PHE A 342 5 5 HELIX 22 AC4 GLY A 345 LEU A 364 1 20 HELIX 23 AC5 GLN B 3 ARG B 7 5 5 HELIX 24 AC6 ASN B 14 ALA B 19 5 6 HELIX 25 AC7 GLY B 22 GLU B 34 1 13 HELIX 26 AC8 THR B 48 ARG B 57 1 10 HELIX 27 AC9 TYR B 77 MET B 81 5 5 HELIX 28 AD1 PRO B 84 ASN B 94 1 11 HELIX 29 AD2 ALA B 95 PHE B 97 5 3 HELIX 30 AD3 THR B 98 ASP B 104 1 7 HELIX 31 AD4 LYS B 105 ALA B 119 1 15 HELIX 32 AD5 PHE B 128 ILE B 132 1 5 HELIX 33 AD6 ALA B 134 GLY B 146 1 13 HELIX 34 AD7 LEU B 148 THR B 150 5 3 HELIX 35 AD8 GLU B 151 CYS B 164 1 14 HELIX 36 AD9 ASP B 171 GLU B 199 1 29 HELIX 37 AE1 ASP B 203 ASN B 210 1 8 HELIX 38 AE2 SER B 219 GLU B 236 1 18 HELIX 39 AE3 THR B 237 HIS B 252 1 16 HELIX 40 AE4 HIS B 252 ASP B 262 1 11 HELIX 41 AE5 LEU B 265 SER B 278 1 14 HELIX 42 AE6 MET B 307 ASN B 312 1 6 HELIX 43 AE7 ASP B 314 GLY B 319 1 6 HELIX 44 AE8 GLY B 345 LEU B 364 1 20 SHEET 1 AA1 5 VAL A 36 ARG A 38 0 SHEET 2 AA1 5 ALA A 44 ALA A 46 -1 O ALA A 45 N PHE A 37 SHEET 3 AA1 5 LYS A 303 LEU A 306 1 O MET A 305 N ALA A 46 SHEET 4 AA1 5 MET A 283 LEU A 287 -1 N MET A 283 O LEU A 306 SHEET 5 AA1 5 PHE A 62 SER A 63 -1 N SER A 63 O THR A 286 SHEET 1 AA2 3 GLU A 125 ASP A 127 0 SHEET 2 AA2 3 PRO A 390 VAL A 392 -1 O VAL A 391 N CYS A 126 SHEET 3 AA2 3 ARG A 368 LEU A 369 -1 N ARG A 368 O VAL A 392 SHEET 1 AA3 2 GLU A 212 VAL A 213 0 SHEET 2 AA3 2 GLN A 216 ARG A 217 -1 O GLN A 216 N VAL A 213 SHEET 1 AA4 2 THR A 291 PHE A 293 0 SHEET 2 AA4 2 THR A 296 LEU A 298 -1 O LEU A 298 N THR A 291 SHEET 1 AA5 5 VAL B 36 ARG B 38 0 SHEET 2 AA5 5 ALA B 44 ALA B 46 -1 O ALA B 45 N PHE B 37 SHEET 3 AA5 5 LYS B 303 LEU B 306 1 O MET B 305 N ALA B 46 SHEET 4 AA5 5 MET B 283 LEU B 287 -1 N MET B 283 O LEU B 306 SHEET 5 AA5 5 PHE B 62 SER B 63 -1 N SER B 63 O THR B 286 SHEET 1 AA6 3 GLU B 125 ASP B 127 0 SHEET 2 AA6 3 PRO B 390 VAL B 392 -1 O VAL B 391 N CYS B 126 SHEET 3 AA6 3 ARG B 368 LEU B 369 -1 N ARG B 368 O VAL B 392 SHEET 1 AA7 2 GLU B 212 VAL B 213 0 SHEET 2 AA7 2 GLN B 216 ARG B 217 -1 O GLN B 216 N VAL B 213 SHEET 1 AA8 2 THR B 291 PHE B 293 0 SHEET 2 AA8 2 THR B 296 LEU B 298 -1 O LEU B 298 N THR B 291 LINK SG CYS A 343 FE HEM A 501 1555 1555 2.38 LINK SG CYS B 343 FE HEM B 502 1555 1555 2.44 CISPEP 1 ASP A 83 PRO A 84 0 1.10 CISPEP 2 ASN A 329 PRO A 330 0 1.73 CISPEP 3 ASP B 83 PRO B 84 0 10.15 CISPEP 4 ASN B 329 PRO B 330 0 -4.19 SITE 1 AC1 23 GLU A 56 ILE A 79 HIS A 86 ARG A 90 SITE 2 AC1 23 PHE A 97 ILE A 141 GLY A 233 GLY A 234 SITE 3 AC1 23 THR A 237 THR A 238 VAL A 280 ARG A 285 SITE 4 AC1 23 ALA A 335 PHE A 336 GLY A 337 PHE A 338 SITE 5 AC1 23 HIS A 341 CYS A 343 LEU A 344 GLY A 345 SITE 6 AC1 23 LEU A 348 C3S A 502 HOH A 667 SITE 1 AC2 5 TYR A 77 MET A 179 LEU A 229 HEM A 501 SITE 2 AC2 5 HOH A 812 SITE 1 AC3 8 GLU A 122 LEU A 145 GLY A 146 ARG A 196 SITE 2 AC3 8 ASP A 203 HIS A 402 HOH A 601 HOH A 614 SITE 1 AC4 7 TYR B 77 MET B 179 LEU B 229 PHE B 382 SITE 2 AC4 7 HEM B 502 HOH B 746 HOH B 924 SITE 1 AC5 23 GLU B 56 ILE B 79 HIS B 86 ARG B 90 SITE 2 AC5 23 PHE B 97 ILE B 230 GLY B 233 THR B 237 SITE 3 AC5 23 THR B 238 THR B 241 PRO B 279 VAL B 280 SITE 4 AC5 23 ARG B 285 ALA B 335 PHE B 336 GLY B 337 SITE 5 AC5 23 PHE B 338 HIS B 341 CYS B 343 LEU B 344 SITE 6 AC5 23 GLY B 345 C3S B 501 HOH B 669 SITE 1 AC6 6 LEU B 145 GLY B 146 GLU B 151 VAL B 192 SITE 2 AC6 6 ARG B 196 ASP B 203 CRYST1 61.455 96.140 145.888 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016272 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006855 0.00000