HEADER TRANSFERASE 17-JUN-14 4TRT TITLE DEINOCOCCUS RADIODURANS DNA POLYMERASE III SUBUNIT BETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE III SUBUNIT BETA; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE LAST SEVEN RESIDUES ARE NOT VISIBLE IN THE COMPND 7 ELECTRON DENSITY. THE LAST SIX RESIDUES ARE CLONING ARTEFACTS. THE COMPND 8 UNIPROT ENTRY Q9RYE8 SEQUENCE IS INCORRECT DUE TO AN ANNOTATION COMPND 9 MISTAKE IN THE GENOMIC SEQUENCE LEADING TO A FRAMESHIFT. THIS IS COMPND 10 CORRECTED IN OUR SEQUENCE GIVING A PROTEIN OF 362 AA. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 STRAIN: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / SOURCE 5 NCIMB 9279 / R1 / VKM B-1422; SOURCE 6 GENE: DR_0001; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: STAR PLYSS PRARE; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS DNA CLAMP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.NIIRANEN,K.LIAN,K.A.JOHNSON,E.MOE REVDAT 2 20-DEC-23 4TRT 1 REMARK REVDAT 1 29-APR-15 4TRT 0 JRNL AUTH L.NIIRANEN,K.LIAN,K.A.JOHNSON,E.MOE JRNL TITL CRYSTAL STRUCTURE OF THE DNA POLYMERASE III BETA SUBUNIT ( JRNL TITL 2 BETA-CLAMP) FROM THE EXTREMOPHILE DEINOCOCCUS RADIODURANS. JRNL REF BMC STRUCT.BIOL. V. 15 5 2015 JRNL REFN ESSN 1472-6807 JRNL PMID 25886944 JRNL DOI 10.1186/S12900-015-0032-6 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 55287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2806 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3559 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 292 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.179 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.183 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5550 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3758 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7520 ; 1.255 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9170 ; 0.996 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 728 ; 6.120 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;36.109 ;24.050 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 938 ;13.421 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;14.400 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 872 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6302 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1104 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 121 A 243 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2994 42.7487 43.4358 REMARK 3 T TENSOR REMARK 3 T11: 0.0588 T22: 0.1209 REMARK 3 T33: 0.0494 T12: -0.0024 REMARK 3 T13: 0.0010 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 2.1968 L22: 4.5605 REMARK 3 L33: 1.4717 L12: -1.0899 REMARK 3 L13: 0.0644 L23: 0.0622 REMARK 3 S TENSOR REMARK 3 S11: 0.1108 S12: 0.1725 S13: 0.2227 REMARK 3 S21: -0.2532 S22: -0.0542 S23: -0.1559 REMARK 3 S31: -0.1376 S32: 0.0402 S33: -0.0566 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 361 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0521 15.1874 44.5949 REMARK 3 T TENSOR REMARK 3 T11: 0.0471 T22: 0.0436 REMARK 3 T33: 0.0080 T12: 0.0226 REMARK 3 T13: 0.0120 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 3.4099 L22: 2.0660 REMARK 3 L33: 1.7042 L12: 0.3262 REMARK 3 L13: -0.2945 L23: 0.2270 REMARK 3 S TENSOR REMARK 3 S11: -0.0622 S12: -0.3014 S13: -0.1096 REMARK 3 S21: 0.1834 S22: -0.0172 S23: 0.0215 REMARK 3 S31: 0.0543 S32: 0.0523 S33: 0.0794 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 120 REMARK 3 ORIGIN FOR THE GROUP (A): -27.0023 6.2769 53.6247 REMARK 3 T TENSOR REMARK 3 T11: 0.0456 T22: 0.1075 REMARK 3 T33: 0.1161 T12: -0.0009 REMARK 3 T13: 0.0125 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 3.8416 L22: 1.6366 REMARK 3 L33: 3.0224 L12: -0.4578 REMARK 3 L13: -1.6582 L23: 0.8215 REMARK 3 S TENSOR REMARK 3 S11: -0.0752 S12: -0.0277 S13: -0.4201 REMARK 3 S21: -0.0322 S22: -0.0198 S23: -0.0506 REMARK 3 S31: 0.1388 S32: 0.0053 S33: 0.0949 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 121 B 243 REMARK 3 ORIGIN FOR THE GROUP (A): -50.9654 23.6381 57.0073 REMARK 3 T TENSOR REMARK 3 T11: 0.0160 T22: 0.1110 REMARK 3 T33: 0.0344 T12: -0.0273 REMARK 3 T13: -0.0056 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 2.2158 L22: 4.5064 REMARK 3 L33: 1.9717 L12: -0.5955 REMARK 3 L13: -0.0535 L23: -0.5413 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: 0.0778 S13: -0.2335 REMARK 3 S21: 0.0074 S22: -0.0399 S23: 0.1686 REMARK 3 S31: 0.1154 S32: -0.0721 S33: 0.0319 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 244 B 361 REMARK 3 ORIGIN FOR THE GROUP (A): -48.7313 50.5844 50.7007 REMARK 3 T TENSOR REMARK 3 T11: 0.0387 T22: 0.0369 REMARK 3 T33: 0.0221 T12: 0.0162 REMARK 3 T13: 0.0261 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 2.9965 L22: 2.7920 REMARK 3 L33: 2.1545 L12: 0.9185 REMARK 3 L13: -0.3435 L23: -0.5109 REMARK 3 S TENSOR REMARK 3 S11: 0.0896 S12: -0.1878 S13: 0.0994 REMARK 3 S21: 0.2419 S22: -0.0444 S23: 0.2363 REMARK 3 S31: -0.1077 S32: -0.0945 S33: -0.0451 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4TRT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202161. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97239 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55287 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.52800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2POL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 5000 MME, 0.12 M TRIS, 3.6% REMARK 280 HEXANEDIOL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 132.49333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.24667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.24667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 132.49333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 362 REMARK 465 GLU A 363 REMARK 465 ASN A 364 REMARK 465 LEU A 365 REMARK 465 TYR A 366 REMARK 465 PHE A 367 REMARK 465 GLN A 368 REMARK 465 VAL B 362 REMARK 465 GLU B 363 REMARK 465 ASN B 364 REMARK 465 LEU B 365 REMARK 465 TYR B 366 REMARK 465 PHE B 367 REMARK 465 GLN B 368 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 50 -19.58 79.01 REMARK 500 TYR A 173 -66.66 -125.42 REMARK 500 THR A 221 -169.60 -118.54 REMARK 500 ASP A 222 104.40 -56.76 REMARK 500 ARG A 223 -19.40 77.89 REMARK 500 ASN A 271 82.71 -151.03 REMARK 500 LEU B 50 -18.73 78.61 REMARK 500 TYR B 173 -65.19 -127.08 REMARK 500 ASN B 271 83.46 -150.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 183 GLY A 184 -146.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE LAST SIX RESIDUES ARE CLONING ARTEFACTS. THE UNIPROT ENTRY REMARK 999 Q9RYE8 SEQUENCE IS INCORRECT DUE TO AN ANNOTATION MISTAKE IN THE REMARK 999 GENOMIC SEQUENCE LEADING TO A FRAMESHIFT. THIS IS CORRECTED IN OUR REMARK 999 SEQUENCE GIVING A PROTEIN OF 362 AA. DBREF 4TRT A 1 361 UNP Q9RYE8 Q9RYE8_DEIRA 1 361 DBREF 4TRT B 1 361 UNP Q9RYE8 Q9RYE8_DEIRA 1 361 SEQADV 4TRT VAL A 1 UNP Q9RYE8 MET 1 CONFLICT SEQADV 4TRT VAL A 347 UNP Q9RYE8 ARG 347 SEE REMARK 999 SEQADV 4TRT GLY A 348 UNP Q9RYE8 ARG 348 SEE REMARK 999 SEQADV 4TRT GLY A 349 UNP Q9RYE8 TRP 349 SEE REMARK 999 SEQADV 4TRT GLY A 351 UNP Q9RYE8 ARG 351 SEE REMARK 999 SEQADV 4TRT GLY A 352 UNP Q9RYE8 ARG 352 SEE REMARK 999 SEQADV 4TRT TYR A 353 UNP Q9RYE8 VAL 353 SEE REMARK 999 SEQADV 4TRT MET A 354 UNP Q9RYE8 TYR 354 SEE REMARK 999 SEQADV 4TRT ALA A 355 UNP Q9RYE8 GLY 355 SEE REMARK 999 SEQADV 4TRT VAL A 356 UNP Q9RYE8 GLY 356 SEE REMARK 999 SEQADV 4TRT MET A 357 UNP Q9RYE8 HIS 357 SEE REMARK 999 SEQADV 4TRT VAL A 358 UNP Q9RYE8 GLY 358 SEE REMARK 999 SEQADV 4TRT THR A 359 UNP Q9RYE8 HIS 359 SEE REMARK 999 SEQADV 4TRT LEU A 360 UNP Q9RYE8 ALA 360 SEE REMARK 999 SEQADV 4TRT ARG A 361 UNP Q9RYE8 ALA 361 SEE REMARK 999 SEQADV 4TRT VAL A 362 UNP Q9RYE8 SEE REMARK 999 SEQADV 4TRT GLU A 363 UNP Q9RYE8 EXPRESSION TAG SEQADV 4TRT ASN A 364 UNP Q9RYE8 EXPRESSION TAG SEQADV 4TRT LEU A 365 UNP Q9RYE8 EXPRESSION TAG SEQADV 4TRT TYR A 366 UNP Q9RYE8 EXPRESSION TAG SEQADV 4TRT PHE A 367 UNP Q9RYE8 EXPRESSION TAG SEQADV 4TRT GLN A 368 UNP Q9RYE8 EXPRESSION TAG SEQADV 4TRT VAL B 1 UNP Q9RYE8 MET 1 CONFLICT SEQADV 4TRT VAL B 347 UNP Q9RYE8 ARG 347 SEE REMARK 999 SEQADV 4TRT GLY B 348 UNP Q9RYE8 ARG 348 SEE REMARK 999 SEQADV 4TRT GLY B 349 UNP Q9RYE8 TRP 349 SEE REMARK 999 SEQADV 4TRT GLY B 351 UNP Q9RYE8 ARG 351 SEE REMARK 999 SEQADV 4TRT GLY B 352 UNP Q9RYE8 ARG 352 SEE REMARK 999 SEQADV 4TRT TYR B 353 UNP Q9RYE8 VAL 353 SEE REMARK 999 SEQADV 4TRT MET B 354 UNP Q9RYE8 TYR 354 SEE REMARK 999 SEQADV 4TRT ALA B 355 UNP Q9RYE8 GLY 355 SEE REMARK 999 SEQADV 4TRT VAL B 356 UNP Q9RYE8 GLY 356 SEE REMARK 999 SEQADV 4TRT MET B 357 UNP Q9RYE8 HIS 357 SEE REMARK 999 SEQADV 4TRT VAL B 358 UNP Q9RYE8 GLY 358 SEE REMARK 999 SEQADV 4TRT THR B 359 UNP Q9RYE8 HIS 359 SEE REMARK 999 SEQADV 4TRT LEU B 360 UNP Q9RYE8 ALA 360 SEE REMARK 999 SEQADV 4TRT ARG B 361 UNP Q9RYE8 ALA 361 SEE REMARK 999 SEQADV 4TRT VAL B 362 UNP Q9RYE8 SEE REMARK 999 SEQADV 4TRT GLU B 363 UNP Q9RYE8 EXPRESSION TAG SEQADV 4TRT ASN B 364 UNP Q9RYE8 EXPRESSION TAG SEQADV 4TRT LEU B 365 UNP Q9RYE8 EXPRESSION TAG SEQADV 4TRT TYR B 366 UNP Q9RYE8 EXPRESSION TAG SEQADV 4TRT PHE B 367 UNP Q9RYE8 EXPRESSION TAG SEQADV 4TRT GLN B 368 UNP Q9RYE8 EXPRESSION TAG SEQRES 1 A 368 VAL MET LYS ALA ASN VAL THR LYS LYS THR LEU ASN GLU SEQRES 2 A 368 GLY LEU GLY LEU LEU GLU ARG VAL ILE PRO SER ARG SER SEQRES 3 A 368 SER ASN PRO LEU LEU THR ALA LEU LYS VAL GLU THR SER SEQRES 4 A 368 GLU GLY GLY LEU THR LEU SER GLY THR ASN LEU GLU ILE SEQRES 5 A 368 ASP LEU SER CYS PHE VAL PRO ALA GLU VAL GLN GLN PRO SEQRES 6 A 368 GLU ASN PHE VAL VAL PRO ALA HIS LEU PHE ALA GLN ILE SEQRES 7 A 368 VAL ARG ASN LEU GLY GLY GLU LEU VAL GLU LEU GLU LEU SEQRES 8 A 368 SER GLY GLN GLU LEU SER VAL ARG SER GLY GLY SER ASP SEQRES 9 A 368 PHE LYS LEU GLN THR GLY ASP ILE GLU ALA TYR PRO PRO SEQRES 10 A 368 LEU SER PHE PRO ALA GLN ALA ASP VAL SER LEU ASP GLY SEQRES 11 A 368 GLY GLU LEU SER ARG ALA PHE SER SER VAL ARG TYR ALA SEQRES 12 A 368 ALA SER ASN GLU ALA PHE GLN ALA VAL PHE ARG GLY ILE SEQRES 13 A 368 LYS LEU GLU HIS HIS GLY GLU SER ALA ARG VAL VAL ALA SEQRES 14 A 368 SER ASP GLY TYR ARG VAL ALA ILE ARG ASP PHE PRO ALA SEQRES 15 A 368 SER GLY ASP GLY LYS ASN LEU ILE ILE PRO ALA ARG SER SEQRES 16 A 368 VAL ASP GLU LEU ILE ARG VAL LEU LYS ASP GLY GLU ALA SEQRES 17 A 368 ARG PHE THR TYR GLY ASP GLY MET LEU THR VAL THR THR SEQRES 18 A 368 ASP ARG VAL LYS MET ASN LEU LYS LEU LEU ASP GLY ASP SEQRES 19 A 368 PHE PRO ASP TYR GLU ARG VAL ILE PRO LYS ASP ILE LYS SEQRES 20 A 368 LEU GLN VAL THR LEU PRO ALA THR ALA LEU LYS GLU ALA SEQRES 21 A 368 VAL ASN ARG VAL ALA VAL LEU ALA ASP LYS ASN ALA ASN SEQRES 22 A 368 ASN ARG VAL GLU PHE LEU VAL SER GLU GLY THR LEU ARG SEQRES 23 A 368 LEU ALA ALA GLU GLY ASP TYR GLY ARG ALA GLN ASP THR SEQRES 24 A 368 LEU SER VAL THR GLN GLY GLY THR GLU GLN ALA MET SER SEQRES 25 A 368 LEU ALA PHE ASN ALA ARG HIS VAL LEU ASP ALA LEU GLY SEQRES 26 A 368 PRO ILE ASP GLY ASP ALA GLU LEU LEU PHE SER GLY SER SEQRES 27 A 368 THR SER PRO ALA ILE PHE ARG ALA VAL GLY GLY GLY GLY SEQRES 28 A 368 GLY TYR MET ALA VAL MET VAL THR LEU ARG VAL GLU ASN SEQRES 29 A 368 LEU TYR PHE GLN SEQRES 1 B 368 VAL MET LYS ALA ASN VAL THR LYS LYS THR LEU ASN GLU SEQRES 2 B 368 GLY LEU GLY LEU LEU GLU ARG VAL ILE PRO SER ARG SER SEQRES 3 B 368 SER ASN PRO LEU LEU THR ALA LEU LYS VAL GLU THR SER SEQRES 4 B 368 GLU GLY GLY LEU THR LEU SER GLY THR ASN LEU GLU ILE SEQRES 5 B 368 ASP LEU SER CYS PHE VAL PRO ALA GLU VAL GLN GLN PRO SEQRES 6 B 368 GLU ASN PHE VAL VAL PRO ALA HIS LEU PHE ALA GLN ILE SEQRES 7 B 368 VAL ARG ASN LEU GLY GLY GLU LEU VAL GLU LEU GLU LEU SEQRES 8 B 368 SER GLY GLN GLU LEU SER VAL ARG SER GLY GLY SER ASP SEQRES 9 B 368 PHE LYS LEU GLN THR GLY ASP ILE GLU ALA TYR PRO PRO SEQRES 10 B 368 LEU SER PHE PRO ALA GLN ALA ASP VAL SER LEU ASP GLY SEQRES 11 B 368 GLY GLU LEU SER ARG ALA PHE SER SER VAL ARG TYR ALA SEQRES 12 B 368 ALA SER ASN GLU ALA PHE GLN ALA VAL PHE ARG GLY ILE SEQRES 13 B 368 LYS LEU GLU HIS HIS GLY GLU SER ALA ARG VAL VAL ALA SEQRES 14 B 368 SER ASP GLY TYR ARG VAL ALA ILE ARG ASP PHE PRO ALA SEQRES 15 B 368 SER GLY ASP GLY LYS ASN LEU ILE ILE PRO ALA ARG SER SEQRES 16 B 368 VAL ASP GLU LEU ILE ARG VAL LEU LYS ASP GLY GLU ALA SEQRES 17 B 368 ARG PHE THR TYR GLY ASP GLY MET LEU THR VAL THR THR SEQRES 18 B 368 ASP ARG VAL LYS MET ASN LEU LYS LEU LEU ASP GLY ASP SEQRES 19 B 368 PHE PRO ASP TYR GLU ARG VAL ILE PRO LYS ASP ILE LYS SEQRES 20 B 368 LEU GLN VAL THR LEU PRO ALA THR ALA LEU LYS GLU ALA SEQRES 21 B 368 VAL ASN ARG VAL ALA VAL LEU ALA ASP LYS ASN ALA ASN SEQRES 22 B 368 ASN ARG VAL GLU PHE LEU VAL SER GLU GLY THR LEU ARG SEQRES 23 B 368 LEU ALA ALA GLU GLY ASP TYR GLY ARG ALA GLN ASP THR SEQRES 24 B 368 LEU SER VAL THR GLN GLY GLY THR GLU GLN ALA MET SER SEQRES 25 B 368 LEU ALA PHE ASN ALA ARG HIS VAL LEU ASP ALA LEU GLY SEQRES 26 B 368 PRO ILE ASP GLY ASP ALA GLU LEU LEU PHE SER GLY SER SEQRES 27 B 368 THR SER PRO ALA ILE PHE ARG ALA VAL GLY GLY GLY GLY SEQRES 28 B 368 GLY TYR MET ALA VAL MET VAL THR LEU ARG VAL GLU ASN SEQRES 29 B 368 LEU TYR PHE GLN FORMUL 3 HOH *292(H2 O) HELIX 1 AA1 LYS A 8 ILE A 22 1 15 HELIX 2 AA2 ALA A 72 LEU A 82 1 11 HELIX 3 AA3 ASP A 111 TYR A 115 5 5 HELIX 4 AA4 GLY A 130 ARG A 141 1 12 HELIX 5 AA5 TYR A 142 ALA A 144 5 3 HELIX 6 AA6 GLN A 150 PHE A 153 5 4 HELIX 7 AA7 ALA A 193 LEU A 203 1 11 HELIX 8 AA8 ASP A 237 ILE A 242 5 6 HELIX 9 AA9 ALA A 254 VAL A 266 1 13 HELIX 10 AB1 ALA A 317 GLY A 325 1 9 HELIX 11 AB2 GLY A 348 GLY A 351 5 4 HELIX 12 AB3 LYS B 8 ILE B 22 1 15 HELIX 13 AB4 ALA B 72 LEU B 82 1 11 HELIX 14 AB5 ASP B 111 TYR B 115 5 5 HELIX 15 AB6 GLY B 130 ARG B 141 1 12 HELIX 16 AB7 TYR B 142 ALA B 144 5 3 HELIX 17 AB8 GLN B 150 PHE B 153 5 4 HELIX 18 AB9 ALA B 193 LEU B 203 1 11 HELIX 19 AC1 ASP B 237 ILE B 242 5 6 HELIX 20 AC2 ALA B 254 VAL B 266 1 13 HELIX 21 AC3 ALA B 317 GLY B 325 1 9 HELIX 22 AC4 GLY B 348 GLY B 351 5 4 SHEET 1 AA1 9 GLU A 61 GLN A 63 0 SHEET 2 AA1 9 MET A 2 THR A 7 -1 N LYS A 3 O GLN A 63 SHEET 3 AA1 9 LEU A 86 SER A 92 -1 O VAL A 87 N VAL A 6 SHEET 4 AA1 9 GLU A 95 SER A 100 -1 O SER A 97 N GLU A 90 SHEET 5 AA1 9 SER A 103 GLN A 108 -1 O LEU A 107 N LEU A 96 SHEET 6 AA1 9 GLY B 294 SER B 301 -1 O ARG B 295 N LYS A 106 SHEET 7 AA1 9 THR B 284 GLU B 290 -1 N LEU B 287 O ASP B 298 SHEET 8 AA1 9 ARG B 275 SER B 281 -1 N GLU B 277 O ALA B 288 SHEET 9 AA1 9 ALA B 310 ASN B 316 -1 O LEU B 313 N PHE B 278 SHEET 1 AA2 8 PHE A 68 PRO A 71 0 SHEET 2 AA2 8 ALA A 33 THR A 38 -1 N LEU A 34 O VAL A 70 SHEET 3 AA2 8 GLY A 42 THR A 48 -1 O THR A 44 N GLU A 37 SHEET 4 AA2 8 ILE A 52 PRO A 59 -1 O VAL A 58 N LEU A 43 SHEET 5 AA2 8 VAL A 224 LYS A 229 -1 O LYS A 225 N SER A 55 SHEET 6 AA2 8 MET A 216 THR A 220 -1 N LEU A 217 O LEU A 228 SHEET 7 AA2 8 GLU A 207 TYR A 212 -1 N ARG A 209 O THR A 220 SHEET 8 AA2 8 VAL A 126 ASP A 129 -1 N LEU A 128 O ALA A 208 SHEET 1 AA3 9 LEU A 189 PRO A 192 0 SHEET 2 AA3 9 GLY A 155 HIS A 161 -1 N LEU A 158 O LEU A 189 SHEET 3 AA3 9 SER A 164 SER A 170 -1 O ARG A 166 N GLU A 159 SHEET 4 AA3 9 VAL A 175 PRO A 181 -1 O PHE A 180 N ALA A 165 SHEET 5 AA3 9 TYR A 353 MET A 357 -1 O VAL A 356 N VAL A 175 SHEET 6 AA3 9 ALA A 342 ALA A 346 -1 N ALA A 342 O MET A 357 SHEET 7 AA3 9 ASP A 330 PHE A 335 -1 N LEU A 334 O ILE A 343 SHEET 8 AA3 9 LEU A 248 PRO A 253 -1 N LEU A 252 O ALA A 331 SHEET 9 AA3 9 THR A 303 GLY A 306 -1 O GLY A 305 N GLN A 249 SHEET 1 AA4 9 ALA A 310 ASN A 316 0 SHEET 2 AA4 9 ARG A 275 SER A 281 -1 N PHE A 278 O LEU A 313 SHEET 3 AA4 9 THR A 284 GLU A 290 -1 O ALA A 288 N GLU A 277 SHEET 4 AA4 9 GLY A 294 SER A 301 -1 O ASP A 298 N LEU A 287 SHEET 5 AA4 9 SER B 103 GLN B 108 -1 O LYS B 106 N ARG A 295 SHEET 6 AA4 9 GLU B 95 SER B 100 -1 N LEU B 96 O LEU B 107 SHEET 7 AA4 9 LEU B 86 SER B 92 -1 N GLU B 90 O SER B 97 SHEET 8 AA4 9 MET B 2 THR B 7 -1 N VAL B 6 O VAL B 87 SHEET 9 AA4 9 GLU B 61 GLN B 63 -1 O GLN B 63 N LYS B 3 SHEET 1 AA5 8 PHE B 68 PRO B 71 0 SHEET 2 AA5 8 ALA B 33 SER B 39 -1 N LEU B 34 O VAL B 70 SHEET 3 AA5 8 GLY B 42 THR B 48 -1 O THR B 44 N GLU B 37 SHEET 4 AA5 8 ILE B 52 PRO B 59 -1 O VAL B 58 N LEU B 43 SHEET 5 AA5 8 VAL B 224 LYS B 229 -1 O LYS B 225 N SER B 55 SHEET 6 AA5 8 MET B 216 THR B 220 -1 N LEU B 217 O LEU B 228 SHEET 7 AA5 8 GLU B 207 TYR B 212 -1 N ARG B 209 O THR B 220 SHEET 8 AA5 8 VAL B 126 ASP B 129 -1 N LEU B 128 O ALA B 208 SHEET 1 AA6 9 LEU B 189 PRO B 192 0 SHEET 2 AA6 9 GLY B 155 HIS B 161 -1 N LEU B 158 O LEU B 189 SHEET 3 AA6 9 SER B 164 SER B 170 -1 O ARG B 166 N GLU B 159 SHEET 4 AA6 9 VAL B 175 PRO B 181 -1 O PHE B 180 N ALA B 165 SHEET 5 AA6 9 TYR B 353 MET B 357 -1 O VAL B 356 N VAL B 175 SHEET 6 AA6 9 ALA B 342 ALA B 346 -1 N ALA B 342 O MET B 357 SHEET 7 AA6 9 ASP B 330 PHE B 335 -1 N LEU B 334 O ILE B 343 SHEET 8 AA6 9 LEU B 248 PRO B 253 -1 N LEU B 252 O ALA B 331 SHEET 9 AA6 9 THR B 303 GLY B 306 -1 O GLY B 305 N GLN B 249 CRYST1 84.410 84.410 198.740 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011847 0.006840 0.000000 0.00000 SCALE2 0.000000 0.013680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005032 0.00000