HEADER RNA 18-JUN-14 4TS0 TITLE CRYSTAL STRUCTURE OF THE SPINACH RNA APTAMER IN COMPLEX WITH DFHBI, TITLE 2 BARIUM IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPINACH RNA APTAMER, BIMOLECULAR CONSTRUCT; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SPINACH RNA APTAMER, BIMOLECULAR CONSTRUCT; COMPND 7 CHAIN: Y; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630 KEYWDS APTAMER, FLUORESCENCE, G-QUADRUPLEX, RNA EXPDTA X-RAY DIFFRACTION AUTHOR K.D.WARNER,M.C.CHEN,W.SONG,R.L.STRACK,A.THORN,S.R.JAFFREY,A.R.FERRE- AUTHOR 2 D'AMARE REVDAT 7 27-DEC-23 4TS0 1 REMARK REVDAT 6 20-APR-22 4TS0 1 COMPND REMARK DBREF HETSYN REVDAT 6 2 1 LINK ATOM REVDAT 5 29-JUL-20 4TS0 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL LINK SITE ATOM REVDAT 4 22-NOV-17 4TS0 1 COMPND SOURCE REMARK REVDAT 3 01-OCT-14 4TS0 1 JRNL REVDAT 2 06-AUG-14 4TS0 1 DBREF REVDAT 1 23-JUL-14 4TS0 0 JRNL AUTH K.D.WARNER,M.C.CHEN,W.SONG,R.L.STRACK,A.THORN,S.R.JAFFREY, JRNL AUTH 2 A.R.FERRE-D'AMARE JRNL TITL STRUCTURAL BASIS FOR ACTIVITY OF HIGHLY EFFICIENT RNA MIMICS JRNL TITL 2 OF GREEN FLUORESCENT PROTEIN. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 658 2014 JRNL REFN ESSN 1545-9985 JRNL PMID 25026079 JRNL DOI 10.1038/NSMB.2865 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 453 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 658 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4470 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.5150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1932 REMARK 3 HETEROGEN ATOMS : 121 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.80000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -1.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.879 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.322 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.252 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.863 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2277 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 950 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3547 ; 1.958 ; 1.395 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2321 ; 1.547 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1092 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 485 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2277 ; 5.551 ; 6.326 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 1 X 44 REMARK 3 RESIDUE RANGE : Y 49 Y 94 REMARK 3 ORIGIN FOR THE GROUP (A): 37.6314 26.8959 1.4246 REMARK 3 T TENSOR REMARK 3 T11: 0.1893 T22: 0.3340 REMARK 3 T33: 0.3067 T12: -0.0030 REMARK 3 T13: -0.0453 T23: -0.0870 REMARK 3 L TENSOR REMARK 3 L11: 0.8627 L22: 0.3815 REMARK 3 L33: 0.2468 L12: 0.1651 REMARK 3 L13: -0.3961 L23: 0.0446 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: 0.1952 S13: -0.2094 REMARK 3 S21: 0.0904 S22: 0.0152 S23: -0.2876 REMARK 3 S31: 0.0089 S32: -0.1189 S33: -0.0380 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4TS0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5498 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9193 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 93.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.25M NACL, 0.1M REMARK 280 SUCCINATE-K PH 7.0, 15% SUCROSE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.88000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.13000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.13000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.88000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, Y, A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 A X 11 N9 C8 N7 C5 C6 N6 N1 REMARK 470 A X 11 C2 N3 C4 REMARK 470 U X 13 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U X 13 C6 REMARK 470 U Y 58 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U Y 58 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N3 G X 19 O6 GLC B 1 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G X 20 O5' - P - OP2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K X 104 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G X 14 O2' REMARK 620 2 A X 16 OP1 69.4 REMARK 620 3 U X 18 O4 145.9 112.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA X 106 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G X 20 O6 REMARK 620 2 U Y 78 O4 74.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K X 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A X 23 OP2 REMARK 620 2 HOH X 205 O 87.5 REMARK 620 3 HOH X 207 O 118.1 63.9 REMARK 620 4 HOH Y 301 O 142.3 114.2 55.8 REMARK 620 5 HOH Y 302 O 136.5 106.1 104.8 69.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K X 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G X 25 O6 REMARK 620 2 G X 26 O6 85.4 REMARK 620 3 G X 29 O6 63.9 89.0 REMARK 620 4 G X 30 O6 135.1 77.6 74.5 REMARK 620 5 G Y 65 O6 95.7 71.2 153.1 116.7 REMARK 620 6 G Y 68 O6 60.3 127.1 107.0 154.8 73.7 REMARK 620 7 G Y 70 O6 144.1 116.1 138.9 79.7 67.8 84.2 REMARK 620 8 G Y 72 O6 98.3 155.7 71.6 83.0 131.7 74.0 74.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K X 105 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G X 25 O3' REMARK 620 2 G X 25 O2' 49.4 REMARK 620 3 G X 26 OP2 48.0 95.4 REMARK 620 4 HOH Y 304 O 120.2 70.8 161.8 REMARK 620 5 HOH Y 305 O 106.7 129.5 88.4 109.5 REMARK 620 6 HOH Y 306 O 104.6 152.7 57.5 134.7 59.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K Y 201 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G X 25 O6 REMARK 620 2 G X 29 O6 62.6 REMARK 620 3 G Y 68 O6 61.8 95.3 REMARK 620 4 G Y 72 O6 101.8 66.0 69.3 REMARK 620 5 U Y 73 O2' 150.6 142.8 95.1 84.7 REMARK 620 6 U Y 73 O2 86.1 148.6 68.4 126.2 67.6 REMARK 620 7 G Y 74 O6 97.5 55.0 150.2 96.9 110.2 135.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K Y 202 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G X 26 OP2 REMARK 620 2 G X 26 O5' 47.7 REMARK 620 3 U Y 61 O3' 167.1 136.5 REMARK 620 4 U Y 61 O2' 141.2 98.0 50.2 REMARK 620 5 U Y 62 OP2 120.4 123.7 46.7 92.2 REMARK 620 6 HOH Y 305 O 86.8 90.7 104.5 74.5 145.0 REMARK 620 7 HOH Y 306 O 71.7 117.4 106.1 128.4 97.0 69.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K X 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH X 203 O REMARK 620 2 HOH Y 307 O 158.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K Y 204 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A Y 84 OP1 REMARK 620 2 FRU D 2 O6 61.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K Y 203 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U Y 86 O4 REMARK 620 2 G Y 87 O6 73.7 REMARK 620 N 1 DBREF 4TS0 X 1 44 PDB 4TS0 4TS0 1 44 DBREF 4TS0 Y 49 101 PDB 4TS0 4TS0 49 101 SEQRES 1 X 44 G A C G C G A C C G A A U SEQRES 2 X 44 G A A A U G G U G A A G G SEQRES 3 X 44 A C G G G U C C A G C C G SEQRES 4 X 44 G C U G CCC SEQRES 1 Y 47 G C A G C C G G C U U G U SEQRES 2 Y 47 U G A G U A G A G U G U G SEQRES 3 Y 47 A G C U C C G U A A C U G SEQRES 4 Y 47 G U C G C G U CCC HET CCC X 44 23 HET CCC Y 101 23 HET GLC A 1 11 HET FRU A 2 12 HET GLC B 1 11 HET FRU B 2 12 HET GLC C 1 11 HET FRU C 2 12 HET GLC D 1 11 HET FRU D 2 12 HET K X 101 1 HET K X 102 1 HET K X 103 1 HET K X 104 1 HET K X 105 1 HET BA X 106 1 HET K Y 201 1 HET K Y 202 1 HET K Y 203 1 HET K Y 204 1 HET K Y 205 1 HET 38E Y 206 18 HETNAM CCC CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM K POTASSIUM ION HETNAM BA BARIUM ION HETNAM 38E (5Z)-5-(3,5-DIFLUORO-4-HYDROXYBENZYLIDENE)-2,3- HETNAM 2 38E DIMETHYL-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 1 CCC 2(C9 H13 N3 O10 P2) FORMUL 3 GLC 4(C6 H12 O6) FORMUL 3 FRU 4(C6 H12 O6) FORMUL 7 K 10(K 1+) FORMUL 12 BA BA 2+ FORMUL 18 38E C12 H10 F2 N2 O2 FORMUL 19 HOH *15(H2 O) LINK O3' G X 43 P CCC X 44 1555 1555 1.59 LINK O3' U Y 94 P CCC Y 101 1555 1555 1.59 LINK C1 GLC A 1 O2 FRU A 2 1555 1555 1.43 LINK C1 GLC B 1 O2 FRU B 2 1555 1555 1.45 LINK C1 GLC C 1 O2 FRU C 2 1555 1555 1.45 LINK C1 GLC D 1 O2 FRU D 2 1555 1555 1.46 LINK O2' G X 14 K K X 104 1555 1555 2.92 LINK OP1 A X 16 K K X 104 1555 1555 2.75 LINK O4 U X 18 K K X 104 1555 1555 2.89 LINK O6 G X 20 BA BA X 106 1555 1555 3.08 LINK OP2 A X 23 K K X 103 1555 1555 3.26 LINK O6 G X 25 K K X 101 1555 1555 3.04 LINK O3' G X 25 K K X 105 1555 1555 3.26 LINK O2' G X 25 K K X 105 1555 1555 3.04 LINK O6 G X 25 K K Y 201 1555 1555 2.75 LINK O6 G X 26 K K X 101 1555 1555 2.56 LINK OP2 G X 26 K K X 105 1555 1555 3.05 LINK OP2 G X 26 K K Y 202 1555 1555 2.88 LINK O5' G X 26 K K Y 202 1555 1555 3.37 LINK O6 G X 29 K K X 101 1555 1555 3.16 LINK O6 G X 29 K K Y 201 1555 1555 3.46 LINK O6 G X 30 K K X 101 1555 1555 2.76 LINK K K X 101 O6 G Y 65 1555 1555 2.86 LINK K K X 101 O6 G Y 68 1555 1555 2.65 LINK K K X 101 O6 G Y 70 1555 1555 2.73 LINK K K X 101 O6 G Y 72 1555 1555 2.93 LINK K K X 102 O HOH X 203 1555 1555 2.05 LINK K K X 102 O HOH Y 307 1555 1555 2.45 LINK K K X 103 O HOH X 205 1555 1555 2.95 LINK K K X 103 O HOH X 207 1555 1555 2.27 LINK K K X 103 O HOH Y 301 1555 1555 3.40 LINK K K X 103 O HOH Y 302 1555 1555 2.65 LINK K K X 105 O HOH Y 304 1555 1555 2.83 LINK K K X 105 O HOH Y 305 1555 1555 2.65 LINK K K X 105 O HOH Y 306 1555 1555 3.40 LINK BA BA X 106 O4 U Y 78 1555 1555 2.95 LINK O6 G Y 56 K K Y 205 1555 1555 3.43 LINK O3' U Y 61 K K Y 202 1555 1555 3.07 LINK O2' U Y 61 K K Y 202 1555 1555 2.50 LINK OP2 U Y 62 K K Y 202 1555 1555 3.13 LINK O6 G Y 68 K K Y 201 1555 1555 2.84 LINK O6 G Y 72 K K Y 201 1555 1555 3.07 LINK O2' U Y 73 K K Y 201 1555 1555 2.90 LINK O2 U Y 73 K K Y 201 1555 1555 2.66 LINK O6 G Y 74 K K Y 201 1555 1555 3.08 LINK OP1 A Y 84 K K Y 204 1555 1555 2.83 LINK O4 U Y 86 K K Y 203 1555 1555 3.01 LINK O6 G Y 87 K K Y 203 1555 1555 3.07 LINK K K Y 202 O HOH Y 305 1555 1555 2.92 LINK K K Y 202 O HOH Y 306 1555 1555 2.40 LINK K K Y 204 O6 FRU D 2 4465 1555 2.62 CRYST1 39.760 49.500 186.260 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025151 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020202 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005369 0.00000