HEADER TOXIN 19-JUN-14 4TSL TITLE CRYSTAL STRUCTURE OF FRAC WITH POC BOUND (CRYSTAL FORM I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRAGACEATOXIN C; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FRAC; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINIA FRAGACEA; SOURCE 3 ORGANISM_COMMON: STRAWBERRY ANEMONE; SOURCE 4 ORGANISM_TAXID: 396334; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEM-T KEYWDS TOXIN, ACTINOPORIN, PORE-FORMING TOXIN, MEMBRANE LIPIDS, KEYWDS 2 PHOSPHOCHOLINE, LIPID-PROTEIN INTERACTION EXPDTA X-RAY DIFFRACTION AUTHOR J.M.M.CAAVEIRO,K.TANAKA,K.TSUMOTO REVDAT 4 08-NOV-23 4TSL 1 REMARK REVDAT 3 29-JAN-20 4TSL 1 REMARK REVDAT 2 03-AUG-16 4TSL 1 JRNL REVDAT 1 04-MAR-15 4TSL 0 JRNL AUTH K.TANAKA,J.M.M.CAAVEIRO,K.MORANTE,J.M.GONZALEZ-MANAS, JRNL AUTH 2 K.TSUMOTO JRNL TITL STRUCTURAL BASIS FOR SELF-ASSEMBLY OF A CYTOLYTIC PORE LINED JRNL TITL 2 BY PROTEIN AND LIPID JRNL REF NAT COMMUN V. 6 6337 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25716479 JRNL DOI 10.1038/NCOMMS7337 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.BELLOMIO,K.MORANTE,A.BARLIC,I.GUTIERREZ-AGUIRRE, REMARK 1 AUTH 2 A.R.VIGUERA,J.M.GONZALEZ-MANAS REMARK 1 TITL PURIFICATION, CLONING AND CHARACTERIZATION OF FRAGACEATOXIN REMARK 1 TITL 2 C, A NOVEL ACTINOPORIN FROM THE SEA ANEMONE ACTINIA FRAGACEA REMARK 1 REF TOXICON V. 54 869 2009 REMARK 1 REFN ISSN 0041-0101 REMARK 1 PMID 19563820 REMARK 1 DOI 10.1016/J.TOXICON.2009.06.022 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 60922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1910 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4415 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2778 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 358 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.246 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3118 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2967 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4254 ; 2.336 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6796 ; 0.902 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 406 ; 7.720 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;27.951 ;22.695 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 499 ;13.835 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;13.316 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 445 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3572 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 792 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5962 63.3596 17.5318 REMARK 3 T TENSOR REMARK 3 T11: 0.0248 T22: 0.0484 REMARK 3 T33: 0.0150 T12: 0.0190 REMARK 3 T13: -0.0091 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.1031 L22: 1.2545 REMARK 3 L33: 2.0783 L12: 0.4622 REMARK 3 L13: 0.4528 L23: 0.3641 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: -0.1168 S13: -0.1118 REMARK 3 S21: 0.0291 S22: 0.0198 S23: -0.0789 REMARK 3 S31: 0.1269 S32: 0.1020 S33: -0.0520 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 179 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1543 71.4373 15.7210 REMARK 3 T TENSOR REMARK 3 T11: 0.0034 T22: 0.0772 REMARK 3 T33: 0.0331 T12: -0.0080 REMARK 3 T13: 0.0019 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 1.4031 L22: 1.6290 REMARK 3 L33: 1.7844 L12: -0.2682 REMARK 3 L13: -0.1349 L23: 0.4905 REMARK 3 S TENSOR REMARK 3 S11: -0.0085 S12: -0.1299 S13: -0.0107 REMARK 3 S21: 0.0334 S22: 0.0389 S23: 0.1989 REMARK 3 S31: 0.0318 S32: -0.1368 S33: -0.0304 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4TSL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202213. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.1 - 4.3 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62950 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 32.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : 0.10300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.10 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3VWI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM POC, 3 MM DDM, 200 MM LI2SO4, REMARK 280 100 MM AMMONIUM FORMATE, 24% PEG 8000, 100 SODIUM ACETATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.87500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.37000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 164.81250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.37000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.93750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.37000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.37000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 164.81250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.37000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.37000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.93750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 109.87500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 351 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 303 O HOH B 311 2.09 REMARK 500 O3 PC B 202 O HOH B 301 2.09 REMARK 500 O HOH A 383 O HOH A 455 2.16 REMARK 500 O HOH A 404 O HOH A 467 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 316 O HOH B 316 7465 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 17 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 53 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 TYR A 73 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR A 73 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 TYR A 113 CD1 - CE1 - CZ ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 161 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 161 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ASP B 3 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ASP B 17 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 LYS B 20 CD - CE - NZ ANGL. DEV. = -24.2 DEGREES REMARK 500 LYS B 20 CD - CE - NZ ANGL. DEV. = 14.2 DEGREES REMARK 500 TYR B 110 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 TYR B 133 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 GLU B 134 OE1 - CD - OE2 ANGL. DEV. = -9.2 DEGREES REMARK 500 ASP B 146 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 48 -76.89 -102.27 REMARK 500 LEU B 14 -156.65 -85.40 REMARK 500 PHE B 16 -131.07 43.58 REMARK 500 MET B 48 -71.90 -103.80 REMARK 500 TYR B 156 27.77 49.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 466 DISTANCE = 6.17 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PC A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PC B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PC B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VWI RELATED DB: PDB REMARK 900 3VWI IS THE SAME PROTEIN IN THE WATER-SOLUBLE STATE (CRYSTAL FORM I) REMARK 900 RELATED ID: 3W9P RELATED DB: PDB REMARK 900 3VWI IS THE SAME PROTEIN IN THE WATER-SOLUBLE STATE (CRYSTAL FORM REMARK 900 II) REMARK 900 RELATED ID: 4TSN RELATED DB: PDB REMARK 900 RELATED ID: 4TSO RELATED DB: PDB REMARK 900 RELATED ID: 4TSP RELATED DB: PDB REMARK 900 RELATED ID: 4TSQ RELATED DB: PDB REMARK 900 RELATED ID: 4TSY RELATED DB: PDB DBREF 4TSL A 1 179 UNP B9W5G6 ACTPC_ACTFR 1 179 DBREF 4TSL B 1 179 UNP B9W5G6 ACTPC_ACTFR 1 179 SEQRES 1 A 179 SER ALA ASP VAL ALA GLY ALA VAL ILE ASP GLY ALA GLY SEQRES 2 A 179 LEU GLY PHE ASP VAL LEU LYS THR VAL LEU GLU ALA LEU SEQRES 3 A 179 GLY ASN VAL LYS ARG LYS ILE ALA VAL GLY ILE ASP ASN SEQRES 4 A 179 GLU SER GLY LYS THR TRP THR ALA MET ASN THR TYR PHE SEQRES 5 A 179 ARG SER GLY THR SER ASP ILE VAL LEU PRO HIS LYS VAL SEQRES 6 A 179 ALA HIS GLY LYS ALA LEU LEU TYR ASN GLY GLN LYS ASN SEQRES 7 A 179 ARG GLY PRO VAL ALA THR GLY VAL VAL GLY VAL ILE ALA SEQRES 8 A 179 TYR SER MET SER ASP GLY ASN THR LEU ALA VAL LEU PHE SEQRES 9 A 179 SER VAL PRO TYR ASP TYR ASN TRP TYR SER ASN TRP TRP SEQRES 10 A 179 ASN VAL ARG VAL TYR LYS GLY GLN LYS ARG ALA ASP GLN SEQRES 11 A 179 ARG MET TYR GLU GLU LEU TYR TYR HIS ARG SER PRO PHE SEQRES 12 A 179 ARG GLY ASP ASN GLY TRP HIS SER ARG GLY LEU GLY TYR SEQRES 13 A 179 GLY LEU LYS SER ARG GLY PHE MET ASN SER SER GLY HIS SEQRES 14 A 179 ALA ILE LEU GLU ILE HIS VAL THR LYS ALA SEQRES 1 B 179 SER ALA ASP VAL ALA GLY ALA VAL ILE ASP GLY ALA GLY SEQRES 2 B 179 LEU GLY PHE ASP VAL LEU LYS THR VAL LEU GLU ALA LEU SEQRES 3 B 179 GLY ASN VAL LYS ARG LYS ILE ALA VAL GLY ILE ASP ASN SEQRES 4 B 179 GLU SER GLY LYS THR TRP THR ALA MET ASN THR TYR PHE SEQRES 5 B 179 ARG SER GLY THR SER ASP ILE VAL LEU PRO HIS LYS VAL SEQRES 6 B 179 ALA HIS GLY LYS ALA LEU LEU TYR ASN GLY GLN LYS ASN SEQRES 7 B 179 ARG GLY PRO VAL ALA THR GLY VAL VAL GLY VAL ILE ALA SEQRES 8 B 179 TYR SER MET SER ASP GLY ASN THR LEU ALA VAL LEU PHE SEQRES 9 B 179 SER VAL PRO TYR ASP TYR ASN TRP TYR SER ASN TRP TRP SEQRES 10 B 179 ASN VAL ARG VAL TYR LYS GLY GLN LYS ARG ALA ASP GLN SEQRES 11 B 179 ARG MET TYR GLU GLU LEU TYR TYR HIS ARG SER PRO PHE SEQRES 12 B 179 ARG GLY ASP ASN GLY TRP HIS SER ARG GLY LEU GLY TYR SEQRES 13 B 179 GLY LEU LYS SER ARG GLY PHE MET ASN SER SER GLY HIS SEQRES 14 B 179 ALA ILE LEU GLU ILE HIS VAL THR LYS ALA HET PC A 201 11 HET PC A 202 22 HET FMT A 203 3 HET FMT A 204 3 HET FMT A 205 3 HET FMT A 206 3 HET FMT A 207 3 HET GOL A 208 6 HET ACT A 209 4 HET PC B 201 22 HET PC B 202 22 HET SO4 B 203 5 HET SO4 B 204 5 HET FMT B 205 3 HET FMT B 206 3 HET FMT B 207 3 HET FMT B 208 3 HET FMT B 209 3 HETNAM PC PHOSPHOCHOLINE HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PC 4(C5 H15 N O4 P 1+) FORMUL 5 FMT 10(C H2 O2) FORMUL 10 GOL C3 H8 O3 FORMUL 11 ACT C2 H3 O2 1- FORMUL 14 SO4 2(O4 S 2-) FORMUL 21 HOH *358(H2 O) HELIX 1 AA1 ALA A 12 LEU A 14 5 3 HELIX 2 AA2 GLY A 15 LEU A 26 1 12 HELIX 3 AA3 ASP A 129 HIS A 139 1 11 HELIX 4 AA4 ASP B 17 LEU B 26 1 10 HELIX 5 AA5 ASP B 129 HIS B 139 1 11 SHEET 1 AA1 6 VAL A 8 ASP A 10 0 SHEET 2 AA1 6 LYS A 69 GLN A 76 -1 O ALA A 70 N ILE A 9 SHEET 3 AA1 6 LYS A 32 GLU A 40 -1 N ASN A 39 O LYS A 69 SHEET 4 AA1 6 HIS A 169 LYS A 178 1 O ILE A 174 N ASP A 38 SHEET 5 AA1 6 LEU A 158 MET A 164 -1 N ARG A 161 O HIS A 175 SHEET 6 AA1 6 GLY A 148 GLY A 155 -1 N LEU A 154 O LEU A 158 SHEET 1 AA2 6 LYS A 64 VAL A 65 0 SHEET 2 AA2 6 TRP A 45 SER A 54 -1 N TRP A 45 O VAL A 65 SHEET 3 AA2 6 VAL A 86 MET A 94 -1 O SER A 93 N THR A 46 SHEET 4 AA2 6 THR A 99 VAL A 106 -1 O VAL A 102 N ILE A 90 SHEET 5 AA2 6 TRP A 116 TYR A 122 -1 O ARG A 120 N ALA A 101 SHEET 6 AA2 6 PHE A 143 ARG A 144 -1 O PHE A 143 N TRP A 117 SHEET 1 AA3 6 VAL B 8 ASP B 10 0 SHEET 2 AA3 6 LYS B 69 GLN B 76 -1 O ALA B 70 N ILE B 9 SHEET 3 AA3 6 LYS B 32 GLU B 40 -1 N ASN B 39 O LYS B 69 SHEET 4 AA3 6 HIS B 169 LYS B 178 1 O ALA B 170 N LYS B 32 SHEET 5 AA3 6 LEU B 158 MET B 164 -1 N ARG B 161 O HIS B 175 SHEET 6 AA3 6 GLY B 148 GLY B 155 -1 N LEU B 154 O LEU B 158 SHEET 1 AA4 6 LYS B 64 VAL B 65 0 SHEET 2 AA4 6 TRP B 45 SER B 54 -1 N TRP B 45 O VAL B 65 SHEET 3 AA4 6 VAL B 86 MET B 94 -1 O SER B 93 N THR B 46 SHEET 4 AA4 6 THR B 99 VAL B 106 -1 O LEU B 100 N TYR B 92 SHEET 5 AA4 6 TRP B 116 TYR B 122 -1 O ARG B 120 N ALA B 101 SHEET 6 AA4 6 PHE B 143 ARG B 144 -1 O PHE B 143 N TRP B 117 SITE 1 AC1 15 ARG A 53 SER A 54 GLY A 85 SER A 105 SITE 2 AC1 15 PRO A 107 TYR A 108 TYR A 113 TYR A 133 SITE 3 AC1 15 TYR A 137 TYR A 138 FMT A 203 HOH A 310 SITE 4 AC1 15 HOH A 360 TYR B 138 SO4 B 203 SITE 1 AC2 14 TRP A 112 TYR A 113 SER A 114 TRP A 116 SITE 2 AC2 14 TYR A 137 PRO A 142 FMT A 206 HOH A 301 SITE 3 AC2 14 HOH A 306 HOH A 314 HOH A 367 TRP B 112 SITE 4 AC2 14 TYR B 113 HOH B 317 SITE 1 AC3 5 ARG A 53 SER A 54 PC A 201 GLU B 134 SITE 2 AC3 5 TYR B 138 SITE 1 AC4 4 HIS A 63 LYS A 64 HOH A 353 ARG B 161 SITE 1 AC5 4 LEU A 23 LYS A 32 HIS A 169 HOH A 313 SITE 1 AC6 7 TYR A 113 SER A 114 TRP A 116 TYR A 137 SITE 2 AC6 7 PC A 202 HOH A 367 TYR B 113 SITE 1 AC7 5 ARG A 120 TYR A 122 LYS A 123 HOH A 403 SITE 2 AC7 5 HOH A 405 SITE 1 AC8 7 ALA A 2 ASP A 3 VAL A 18 HOH A 302 SITE 2 AC8 7 HOH A 318 HOH A 425 ASP B 58 SITE 1 AC9 5 ASN A 147 ASN A 165 SER A 166 SER A 167 SITE 2 AC9 5 HOH A 423 SITE 1 AD1 14 TYR A 138 ARG B 53 SER B 54 GLY B 85 SITE 2 AD1 14 SER B 105 PRO B 107 TYR B 108 TYR B 113 SITE 3 AD1 14 TYR B 133 TYR B 137 TYR B 138 FMT B 206 SITE 4 AD1 14 HOH B 309 HOH B 374 SITE 1 AD2 9 TRP A 112 TYR A 113 TRP B 116 TYR B 137 SITE 2 AD2 9 TYR B 138 PRO B 142 HOH B 301 HOH B 440 SITE 3 AD2 9 HOH B 455 SITE 1 AD3 9 ARG A 53 GLN A 130 TYR A 133 TYR A 138 SITE 2 AD3 9 PC A 201 ARG B 53 GLN B 130 TYR B 133 SITE 3 AD3 9 TYR B 138 SITE 1 AD4 6 VAL B 29 LYS B 30 LYS B 77 ARG B 79 SITE 2 AD4 6 GLY B 80 HOH B 473 SITE 1 AD5 6 TRP A 112 TYR A 113 TYR B 113 SER B 114 SITE 2 AD5 6 TRP B 116 TYR B 137 SITE 1 AD6 5 TYR A 138 HIS A 139 ARG B 53 THR B 84 SITE 2 AD6 5 PC B 201 SITE 1 AD7 4 HIS A 63 HIS B 150 SER B 151 HOH B 373 SITE 1 AD8 5 ARG A 79 ASN B 28 LYS B 30 HIS B 169 SITE 2 AD8 5 HOH B 472 SITE 1 AD9 5 ARG B 120 TYR B 122 LYS B 123 HOH B 417 SITE 2 AD9 5 HOH B 484 CRYST1 64.740 64.740 219.750 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004551 0.00000