HEADER LYASE 25-JUN-14 4TV5 TITLE CRYSTAL STRUCTURE OF CITRATE SYNTHASE SBNG COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-DEHYDRO-3-DEOXYGLUCARATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 426430; SOURCE 4 STRAIN: NEWMAN; SOURCE 5 GENE: SBNG, NWMN_0066; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SIDEROPHORE BIOSYNTHESIS, IRON, CITRATE SYNTHASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.KOBYLARZ,J.C.GRIGG,M.E.P.MURPHY REVDAT 5 27-DEC-23 4TV5 1 REMARK LINK REVDAT 4 22-NOV-17 4TV5 1 SOURCE JRNL REMARK REVDAT 3 17-DEC-14 4TV5 1 JRNL REVDAT 2 05-NOV-14 4TV5 1 JRNL REVDAT 1 29-OCT-14 4TV5 0 JRNL AUTH M.J.KOBYLARZ,J.C.GRIGG,J.R.SHELDON,D.E.HEINRICHS,M.E.MURPHY JRNL TITL SBNG, A CITRATE SYNTHASE IN STAPHYLOCOCCUS AUREUS: A NEW JRNL TITL 2 FOLD ON AN OLD ENZYME. JRNL REF J.BIOL.CHEM. V. 289 33797 2014 JRNL REFN ESSN 1083-351X JRNL PMID 25336653 JRNL DOI 10.1074/JBC.M114.603175 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 20746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1062 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1463 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1909 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.916 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2076 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2836 ; 1.084 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ; 5.465 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;40.330 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 365 ;14.215 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ; 8.948 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 324 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1604 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1306 ; 0.420 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2134 ; 0.762 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 770 ; 1.418 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 702 ; 2.365 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8058 30.1616 14.1938 REMARK 3 T TENSOR REMARK 3 T11: 0.6083 T22: 0.2133 REMARK 3 T33: 0.5567 T12: 0.1696 REMARK 3 T13: 0.2332 T23: 0.1971 REMARK 3 L TENSOR REMARK 3 L11: 12.6741 L22: 4.6835 REMARK 3 L33: 8.2419 L12: 0.0417 REMARK 3 L13: -0.5001 L23: 6.1832 REMARK 3 S TENSOR REMARK 3 S11: 0.1167 S12: 0.7451 S13: 1.3979 REMARK 3 S21: -0.5408 S22: -0.2921 S23: 0.2968 REMARK 3 S31: -0.8668 S32: -0.4409 S33: 0.1753 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2902 22.4933 9.3388 REMARK 3 T TENSOR REMARK 3 T11: 0.0533 T22: 0.0779 REMARK 3 T33: 0.1097 T12: 0.0008 REMARK 3 T13: -0.0024 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.8556 L22: 0.9142 REMARK 3 L33: 1.3127 L12: 0.2256 REMARK 3 L13: -0.2256 L23: -0.1044 REMARK 3 S TENSOR REMARK 3 S11: 0.0122 S12: -0.0096 S13: 0.0614 REMARK 3 S21: -0.0056 S22: 0.0334 S23: -0.0557 REMARK 3 S31: -0.0177 S32: -0.1490 S33: -0.0456 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6683 23.7620 27.2392 REMARK 3 T TENSOR REMARK 3 T11: 0.1002 T22: 0.0815 REMARK 3 T33: 0.0867 T12: -0.0215 REMARK 3 T13: -0.0094 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.3209 L22: 4.1398 REMARK 3 L33: 2.1854 L12: 0.7218 REMARK 3 L13: -0.5298 L23: -1.1665 REMARK 3 S TENSOR REMARK 3 S11: 0.1490 S12: -0.2186 S13: 0.0582 REMARK 3 S21: 0.3704 S22: -0.1068 S23: -0.1041 REMARK 3 S31: -0.0432 S32: -0.0340 S33: -0.0422 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 25.1217 37.5283 24.1573 REMARK 3 T TENSOR REMARK 3 T11: 0.0615 T22: 0.0712 REMARK 3 T33: 0.0816 T12: 0.0040 REMARK 3 T13: -0.0023 T23: -0.0280 REMARK 3 L TENSOR REMARK 3 L11: 6.9635 L22: 10.8007 REMARK 3 L33: 4.4069 L12: -0.4316 REMARK 3 L13: -1.0762 L23: 0.7828 REMARK 3 S TENSOR REMARK 3 S11: 0.0292 S12: -0.0430 S13: 0.1103 REMARK 3 S21: 0.0196 S22: -0.0854 S23: 0.0593 REMARK 3 S31: -0.0438 S32: -0.0074 S33: 0.0562 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 132 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1446 20.3793 25.6245 REMARK 3 T TENSOR REMARK 3 T11: 0.1560 T22: 0.1180 REMARK 3 T33: 0.0854 T12: -0.0122 REMARK 3 T13: 0.0015 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 1.7826 L22: 3.8144 REMARK 3 L33: 0.9345 L12: 0.6291 REMARK 3 L13: 0.1229 L23: -1.5755 REMARK 3 S TENSOR REMARK 3 S11: 0.0113 S12: -0.0244 S13: 0.0689 REMARK 3 S21: 0.3196 S22: -0.0736 S23: 0.1176 REMARK 3 S31: -0.1070 S32: -0.0879 S33: 0.0624 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 190 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0871 14.9598 29.5923 REMARK 3 T TENSOR REMARK 3 T11: 0.0465 T22: 0.1244 REMARK 3 T33: 0.0746 T12: -0.0315 REMARK 3 T13: 0.0248 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.6379 L22: 6.4002 REMARK 3 L33: 4.0716 L12: -1.3997 REMARK 3 L13: -0.9631 L23: 0.2007 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: -0.2754 S13: -0.1470 REMARK 3 S21: 0.3451 S22: 0.1785 S23: 0.3238 REMARK 3 S31: -0.1674 S32: -0.0907 S33: -0.1734 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 213 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8137 13.1683 17.3970 REMARK 3 T TENSOR REMARK 3 T11: 0.0595 T22: 0.1230 REMARK 3 T33: 0.1168 T12: -0.0583 REMARK 3 T13: -0.0008 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 5.3961 L22: 3.2641 REMARK 3 L33: 6.4929 L12: -0.7144 REMARK 3 L13: -1.7883 L23: -0.6823 REMARK 3 S TENSOR REMARK 3 S11: 0.0496 S12: 0.1081 S13: -0.2132 REMARK 3 S21: 0.0456 S22: 0.0961 S23: 0.3990 REMARK 3 S31: 0.4045 S32: -0.3040 S33: -0.1457 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 237 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0579 -0.7068 -2.0378 REMARK 3 T TENSOR REMARK 3 T11: 0.1468 T22: 0.1507 REMARK 3 T33: 0.1663 T12: -0.1244 REMARK 3 T13: 0.0352 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 1.2247 L22: 9.7498 REMARK 3 L33: 8.5526 L12: 1.2305 REMARK 3 L13: 1.1792 L23: 6.5665 REMARK 3 S TENSOR REMARK 3 S11: 0.0265 S12: -0.1789 S13: -0.2234 REMARK 3 S21: 0.3267 S22: -0.1756 S23: 0.3139 REMARK 3 S31: 0.6319 S32: -0.6273 S33: 0.1491 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4TV5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202324. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20780 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 76.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.31400 REMARK 200 R SYM FOR SHELL (I) : 0.31400 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 10.2.23 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 0.1 M REMARK 280 IMIDAZOLE, 4% PEG 8000, PH 9.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -Y,-X,-Z REMARK 290 5555 -X+Y,Y,-Z REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATION: X,X-Y,-Z, -X+Y+1,- REMARK 300 X+1,Z, -Y+1,-X+1,-Z, -Y+1,X-Y,Z AND -X+Y+1,Y,-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -284.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 74.29000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 37.14500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 64.33703 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 37.14500 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 64.33703 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 74.29000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 526 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 GLN A 3 REMARK 465 GLY A 122 REMARK 465 GLY A 123 REMARK 465 ARG A 124 REMARK 465 MET A 125 REMARK 465 ALA A 126 REMARK 465 ARG A 127 REMARK 465 PHE A 128 REMARK 465 GLY A 129 REMARK 465 ARG A 130 REMARK 465 THR A 131 REMARK 465 GLY A 259 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 38 O HOH A 401 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 151 17.46 -148.10 REMARK 500 GLU A 151 15.76 -148.10 REMARK 500 LEU A 234 72.54 -100.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 526 DISTANCE = 6.54 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 90 O REMARK 620 2 ARG A 90 O 4.9 REMARK 620 3 HIS A 143 O 84.4 89.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 151 OE1 REMARK 620 2 ASP A 177 OD2 89.0 REMARK 620 3 HOH A 403 O 101.5 81.4 REMARK 620 4 HOH A 417 O 76.2 150.2 76.5 REMARK 620 5 HOH A 437 O 172.3 98.0 82.8 98.8 REMARK 620 6 HOH A 447 O 101.2 122.3 147.2 86.4 72.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TV6 RELATED DB: PDB DBREF 4TV5 A 1 259 UNP A6QDA6 A6QDA6_STAAE 1 259 SEQRES 1 A 259 MET MET GLN GLN LEU SER LEU LYS HIS ARG LEU ASN ASN SEQRES 2 A 259 GLY ASP SER VAL TYR GLY ILE PHE ASN SER ILE PRO ASP SEQRES 3 A 259 PRO LEU MET ILE GLU VAL ILE ALA ALA SER GLY TYR ASP SEQRES 4 A 259 PHE VAL VAL ILE ASP THR GLU HIS VAL ALA ILE ASN ASP SEQRES 5 A 259 GLU THR LEU ALA HIS LEU ILE ARG ALA ALA GLU ALA ALA SEQRES 6 A 259 HIS ILE ILE PRO ILE VAL ARG VAL THR ALA VAL ILE ASP SEQRES 7 A 259 ARG ASP ILE ILE LYS VAL LEU ASP MET GLY ALA ARG GLY SEQRES 8 A 259 ILE ILE VAL PRO HIS VAL LYS ASP ARG GLU THR VAL GLU SEQRES 9 A 259 HIS ILE VAL LYS LEU SER ARG TYR TYR PRO GLN GLY LEU SEQRES 10 A 259 ARG SER LEU ASN GLY GLY ARG MET ALA ARG PHE GLY ARG SEQRES 11 A 259 THR PRO LEU LEU ASP ALA MET GLU MET ALA ASN GLU HIS SEQRES 12 A 259 ILE MET VAL ILE ALA MET ILE GLU ASP VAL GLU GLY VAL SEQRES 13 A 259 MET ALA ILE ASP ASP ILE ALA GLN VAL GLU GLY LEU ASP SEQRES 14 A 259 MET ILE VAL GLU GLY ALA ALA ASP LEU SER GLN SER LEU SEQRES 15 A 259 GLY ILE PRO TRP GLN THR ARG ASP ASP GLN VAL THR SER SEQRES 16 A 259 HIS VAL GLN HIS ILE PHE GLU VAL VAL ASN ALA HIS GLY SEQRES 17 A 259 LYS HIS PHE CYS ALA LEU PRO ARG GLU ASP GLU ASP ILE SEQRES 18 A 259 ALA LYS TRP GLN ALA GLN GLY VAL GLN THR PHE ILE LEU SEQRES 19 A 259 GLY ASP ASP ARG GLY LYS ILE TYR ARG HIS LEU SER ALA SEQRES 20 A 259 SER LEU ALA THR SER LYS GLN LYS GLY ASP GLU GLY HET CA A 301 1 HET CA A 302 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) FORMUL 4 HOH *135(H2 O) HELIX 1 AA1 SER A 6 ASN A 12 1 7 HELIX 2 AA2 ASP A 26 GLY A 37 1 12 HELIX 3 AA3 ASN A 51 ALA A 65 1 15 HELIX 4 AA4 VAL A 76 MET A 87 1 12 HELIX 5 AA5 ASP A 99 ARG A 111 1 13 HELIX 6 AA6 LEU A 133 ILE A 144 1 12 HELIX 7 AA7 ASP A 152 ALA A 158 1 7 HELIX 8 AA8 ALA A 158 GLN A 164 1 7 HELIX 9 AA9 GLY A 174 LEU A 182 1 9 HELIX 10 AB1 ASP A 190 HIS A 207 1 18 HELIX 11 AB2 GLU A 217 ALA A 226 1 10 HELIX 12 AB3 ASP A 237 ASP A 257 1 21 SHEET 1 AA1 9 VAL A 17 ASN A 22 0 SHEET 2 AA1 9 PHE A 40 ASP A 44 1 O VAL A 42 N ASN A 22 SHEET 3 AA1 9 ILE A 68 ARG A 72 1 O ILE A 70 N VAL A 41 SHEET 4 AA1 9 GLY A 91 VAL A 94 1 O ILE A 93 N VAL A 71 SHEET 5 AA1 9 MET A 145 ILE A 150 1 O MET A 149 N VAL A 94 SHEET 6 AA1 9 MET A 170 GLU A 173 1 O VAL A 172 N ILE A 150 SHEET 7 AA1 9 HIS A 210 ALA A 213 1 O CYS A 212 N ILE A 171 SHEET 8 AA1 9 THR A 231 ASP A 236 1 O ILE A 233 N ALA A 213 SHEET 9 AA1 9 VAL A 17 ASN A 22 1 N GLY A 19 O LEU A 234 LINK O AARG A 90 CA CA A 302 1555 1555 2.93 LINK O BARG A 90 CA CA A 302 1555 1555 2.75 LINK O HIS A 143 CA CA A 302 1555 1555 2.65 LINK OE1 GLU A 151 CA CA A 301 1555 1555 2.41 LINK OD2 ASP A 177 CA CA A 301 1555 1555 2.23 LINK CA CA A 301 O HOH A 403 1555 2655 2.34 LINK CA CA A 301 O HOH A 417 1555 1555 2.45 LINK CA CA A 301 O HOH A 437 1555 1555 2.28 LINK CA CA A 301 O HOH A 447 1555 1555 2.46 CISPEP 1 TYR A 113 PRO A 114 0 5.68 SITE 1 AC1 6 GLU A 151 ASP A 177 HOH A 403 HOH A 417 SITE 2 AC1 6 HOH A 437 HOH A 447 SITE 1 AC2 4 LEU A 7 LYS A 8 ARG A 90 HIS A 143 CRYST1 74.290 74.290 76.720 90.00 90.00 120.00 P 3 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013461 0.007772 0.000000 0.00000 SCALE2 0.000000 0.015543 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013034 0.00000