HEADER LYASE 26-JUN-14 4TV6 TITLE CRYSTAL STRUCTURE OF CITRATE SYNTHASE VARIANT SBNG E151Q COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-DEHYDRO-3-DEOXYGLUCARATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 426430; SOURCE 4 STRAIN: NEWMAN; SOURCE 5 GENE: SBNG, NWMN_0066; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SIDEROPHORE BIOSYNTHESIS, IRON, CITRATE SYNTHASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.KOBYLARZ,J.C.GRIGG,M.E.P.MURPHY REVDAT 5 27-DEC-23 4TV6 1 REMARK REVDAT 4 22-NOV-17 4TV6 1 SOURCE JRNL REMARK REVDAT 3 17-DEC-14 4TV6 1 JRNL REVDAT 2 05-NOV-14 4TV6 1 JRNL REVDAT 1 29-OCT-14 4TV6 0 JRNL AUTH M.J.KOBYLARZ,J.C.GRIGG,J.R.SHELDON,D.E.HEINRICHS,M.E.MURPHY JRNL TITL SBNG, A CITRATE SYNTHASE IN STAPHYLOCOCCUS AUREUS: A NEW JRNL TITL 2 FOLD ON AN OLD ENZYME. JRNL REF J.BIOL.CHEM. V. 289 33797 2014 JRNL REFN ESSN 1083-351X JRNL PMID 25336653 JRNL DOI 10.1074/JBC.M114.603175 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.5 REMARK 3 NUMBER OF REFLECTIONS : 7115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.530 REMARK 3 FREE R VALUE TEST SET COUNT : 322 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 2 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3369 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2686 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.3169 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1753 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.370 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 26 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0964 -22.0020 11.4927 REMARK 3 T TENSOR REMARK 3 T11: 0.3173 T22: 0.3065 REMARK 3 T33: 0.5262 T12: 0.0152 REMARK 3 T13: -0.0040 T23: 0.0853 REMARK 3 L TENSOR REMARK 3 L11: 0.7665 L22: 4.6965 REMARK 3 L33: 5.5444 L12: -0.7311 REMARK 3 L13: -0.6397 L23: -1.0049 REMARK 3 S TENSOR REMARK 3 S11: -0.2439 S12: 0.3013 S13: 0.0657 REMARK 3 S21: 0.1744 S22: 0.2256 S23: 0.7627 REMARK 3 S31: 0.3414 S32: -0.7705 S33: 0.0333 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): -8.8910 -12.3242 8.3895 REMARK 3 T TENSOR REMARK 3 T11: 0.1976 T22: 0.2204 REMARK 3 T33: 0.2711 T12: 0.0191 REMARK 3 T13: -0.0003 T23: 0.0479 REMARK 3 L TENSOR REMARK 3 L11: 2.2931 L22: 5.7566 REMARK 3 L33: 4.5606 L12: -0.2267 REMARK 3 L13: -1.9270 L23: 0.3128 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: -0.1984 S13: -0.1096 REMARK 3 S21: 0.1981 S22: 0.1538 S23: 0.1359 REMARK 3 S31: 0.0836 S32: 0.2202 S33: -0.1019 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6157 -11.5530 26.1636 REMARK 3 T TENSOR REMARK 3 T11: 0.6583 T22: 0.6024 REMARK 3 T33: 0.4325 T12: 0.1032 REMARK 3 T13: 0.1014 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 6.5079 L22: 6.3078 REMARK 3 L33: 5.1513 L12: -0.9510 REMARK 3 L13: -1.7057 L23: 0.3128 REMARK 3 S TENSOR REMARK 3 S11: -0.0552 S12: -1.6263 S13: 0.5597 REMARK 3 S21: 1.6068 S22: 0.5364 S23: 0.2782 REMARK 3 S31: -0.1650 S32: 0.0441 S33: -0.4074 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7996 -2.9088 22.7621 REMARK 3 T TENSOR REMARK 3 T11: 0.7681 T22: 1.0337 REMARK 3 T33: 0.8329 T12: 0.2452 REMARK 3 T13: 0.1622 T23: 0.1157 REMARK 3 L TENSOR REMARK 3 L11: 2.0830 L22: 6.7731 REMARK 3 L33: 1.7727 L12: 0.0185 REMARK 3 L13: -0.5219 L23: -0.0726 REMARK 3 S TENSOR REMARK 3 S11: 0.0823 S12: 0.2632 S13: 0.4304 REMARK 3 S21: 0.6942 S22: -0.1561 S23: 2.2179 REMARK 3 S31: -0.1605 S32: -1.3855 S33: 0.1687 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): -5.9932 -20.1288 28.1666 REMARK 3 T TENSOR REMARK 3 T11: 0.7463 T22: 0.8039 REMARK 3 T33: 0.2914 T12: 0.1975 REMARK 3 T13: -0.0666 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.3734 L22: 4.6247 REMARK 3 L33: 5.2148 L12: -0.4194 REMARK 3 L13: -0.0441 L23: -3.1700 REMARK 3 S TENSOR REMARK 3 S11: -0.6831 S12: -0.4117 S13: -0.2637 REMARK 3 S21: 1.1914 S22: 0.5789 S23: -0.2981 REMARK 3 S31: -0.2016 S32: 1.2778 S33: 0.0899 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 159 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): -13.5833 -20.0330 29.1581 REMARK 3 T TENSOR REMARK 3 T11: 0.7942 T22: 0.8750 REMARK 3 T33: 0.2053 T12: 0.3368 REMARK 3 T13: 0.4310 T23: 0.4247 REMARK 3 L TENSOR REMARK 3 L11: 2.0401 L22: 2.3828 REMARK 3 L33: 4.2273 L12: 0.7453 REMARK 3 L13: -0.8140 L23: -1.5607 REMARK 3 S TENSOR REMARK 3 S11: -0.1849 S12: -0.7788 S13: 0.1328 REMARK 3 S21: 0.9743 S22: 0.4551 S23: 0.8971 REMARK 3 S31: -0.2408 S32: 0.0463 S33: -0.5691 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5718 -29.1746 24.2809 REMARK 3 T TENSOR REMARK 3 T11: 0.8393 T22: 0.9043 REMARK 3 T33: 0.5756 T12: 0.3146 REMARK 3 T13: -0.1688 T23: -0.1491 REMARK 3 L TENSOR REMARK 3 L11: 7.2317 L22: 7.6108 REMARK 3 L33: 2.1646 L12: -5.8722 REMARK 3 L13: 0.8082 L23: 0.0236 REMARK 3 S TENSOR REMARK 3 S11: 1.3350 S12: 0.5377 S13: -0.1051 REMARK 3 S21: -0.8317 S22: -0.1571 S23: -0.8183 REMARK 3 S31: 1.9804 S32: 0.3873 S33: -1.2398 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 191 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): -9.8320 -31.0922 22.6368 REMARK 3 T TENSOR REMARK 3 T11: 0.8357 T22: 0.5717 REMARK 3 T33: 0.4619 T12: 0.0970 REMARK 3 T13: 0.1122 T23: 0.1939 REMARK 3 L TENSOR REMARK 3 L11: 2.0723 L22: 4.6471 REMARK 3 L33: 7.6457 L12: 0.5397 REMARK 3 L13: 0.5034 L23: 0.8833 REMARK 3 S TENSOR REMARK 3 S11: -0.3582 S12: -0.7172 S13: -0.4778 REMARK 3 S21: 1.1949 S22: 0.7791 S23: 0.5026 REMARK 3 S31: 1.5040 S32: 0.5200 S33: -0.3644 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 237 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2425 -31.0615 -1.1544 REMARK 3 T TENSOR REMARK 3 T11: 0.3764 T22: 0.2196 REMARK 3 T33: 0.5455 T12: 0.1183 REMARK 3 T13: 0.0557 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 2.0929 L22: 3.1991 REMARK 3 L33: 3.2495 L12: 0.9890 REMARK 3 L13: 1.3895 L23: -1.8282 REMARK 3 S TENSOR REMARK 3 S11: 0.0788 S12: 0.1160 S13: -0.7382 REMARK 3 S21: -0.0479 S22: -0.3507 S23: -0.1715 REMARK 3 S31: 0.3155 S32: 0.4083 S33: 0.2405 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TV6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202326. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7119 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 27.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.5 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.24600 REMARK 200 R SYM FOR SHELL (I) : 0.04000 REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% (V/V) TASCIMATE, 0.1 M HEPES, 10% REMARK 280 PEG MME 5000, 40 MM GAUNIDINE HYDROCHLORIDE, 5 MM OXALOACETATE, REMARK 280 5 MM COEZNYME A, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -Y,-X,-Z REMARK 290 5555 -X+Y,Y,-Z REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATION:-X+Y,Y,-Z, -X+Y,-X, REMARK 300 Z, X,X-Y,-Z, -Y,X-Y,Z AND -Y,-X,-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 404 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 GLN A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 ALA A 75 REMARK 465 VAL A 76 REMARK 465 ILE A 77 REMARK 465 ASP A 78 REMARK 465 ARG A 79 REMARK 465 ASN A 121 REMARK 465 GLY A 122 REMARK 465 GLY A 123 REMARK 465 ARG A 124 REMARK 465 MET A 125 REMARK 465 ALA A 126 REMARK 465 ARG A 127 REMARK 465 PHE A 128 REMARK 465 GLY A 129 REMARK 465 ARG A 130 REMARK 465 THR A 131 REMARK 465 PRO A 132 REMARK 465 LEU A 133 REMARK 465 LEU A 134 REMARK 465 ASP A 135 REMARK 465 ALA A 136 REMARK 465 MET A 137 REMARK 465 GLU A 138 REMARK 465 MET A 139 REMARK 465 ALA A 140 REMARK 465 ASN A 141 REMARK 465 GLU A 142 REMARK 465 GLU A 258 REMARK 465 GLY A 259 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 100 OD1 ASP A 161 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 49 99.51 -67.19 REMARK 500 VAL A 73 -144.67 -93.01 REMARK 500 ALA A 163 30.54 -81.65 REMARK 500 LEU A 214 79.28 -115.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OAA A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TV5 RELATED DB: PDB REMARK 900 4TV5 IS THE WILD TYPE PROTEIN DBREF 4TV6 A 1 259 UNP A6QDA6 A6QDA6_STAAE 1 259 SEQADV 4TV6 GLN A 151 UNP A6QDA6 GLU 151 ENGINEERED MUTATION SEQRES 1 A 259 MET MET GLN GLN LEU SER LEU LYS HIS ARG LEU ASN ASN SEQRES 2 A 259 GLY ASP SER VAL TYR GLY ILE PHE ASN SER ILE PRO ASP SEQRES 3 A 259 PRO LEU MET ILE GLU VAL ILE ALA ALA SER GLY TYR ASP SEQRES 4 A 259 PHE VAL VAL ILE ASP THR GLU HIS VAL ALA ILE ASN ASP SEQRES 5 A 259 GLU THR LEU ALA HIS LEU ILE ARG ALA ALA GLU ALA ALA SEQRES 6 A 259 HIS ILE ILE PRO ILE VAL ARG VAL THR ALA VAL ILE ASP SEQRES 7 A 259 ARG ASP ILE ILE LYS VAL LEU ASP MET GLY ALA ARG GLY SEQRES 8 A 259 ILE ILE VAL PRO HIS VAL LYS ASP ARG GLU THR VAL GLU SEQRES 9 A 259 HIS ILE VAL LYS LEU SER ARG TYR TYR PRO GLN GLY LEU SEQRES 10 A 259 ARG SER LEU ASN GLY GLY ARG MET ALA ARG PHE GLY ARG SEQRES 11 A 259 THR PRO LEU LEU ASP ALA MET GLU MET ALA ASN GLU HIS SEQRES 12 A 259 ILE MET VAL ILE ALA MET ILE GLN ASP VAL GLU GLY VAL SEQRES 13 A 259 MET ALA ILE ASP ASP ILE ALA GLN VAL GLU GLY LEU ASP SEQRES 14 A 259 MET ILE VAL GLU GLY ALA ALA ASP LEU SER GLN SER LEU SEQRES 15 A 259 GLY ILE PRO TRP GLN THR ARG ASP ASP GLN VAL THR SER SEQRES 16 A 259 HIS VAL GLN HIS ILE PHE GLU VAL VAL ASN ALA HIS GLY SEQRES 17 A 259 LYS HIS PHE CYS ALA LEU PRO ARG GLU ASP GLU ASP ILE SEQRES 18 A 259 ALA LYS TRP GLN ALA GLN GLY VAL GLN THR PHE ILE LEU SEQRES 19 A 259 GLY ASP ASP ARG GLY LYS ILE TYR ARG HIS LEU SER ALA SEQRES 20 A 259 SER LEU ALA THR SER LYS GLN LYS GLY ASP GLU GLY HET OAA A 301 9 HETNAM OAA OXALOACETATE ION FORMUL 2 OAA C4 H3 O5 1- FORMUL 3 HOH *43(H2 O) HELIX 1 AA1 SER A 6 ASN A 12 1 7 HELIX 2 AA2 ASP A 26 SER A 36 1 11 HELIX 3 AA3 ASN A 51 ALA A 65 1 15 HELIX 4 AA4 ILE A 81 MET A 87 1 7 HELIX 5 AA5 ASP A 99 SER A 110 1 12 HELIX 6 AA6 ASP A 152 ALA A 158 1 7 HELIX 7 AA7 ALA A 158 ALA A 163 1 6 HELIX 8 AA8 GLY A 174 LEU A 182 1 9 HELIX 9 AA9 ASP A 190 HIS A 207 1 18 HELIX 10 AB1 GLU A 219 GLN A 227 1 9 HELIX 11 AB2 ASP A 237 GLY A 256 1 20 SHEET 1 AA1 9 VAL A 17 ASN A 22 0 SHEET 2 AA1 9 PHE A 40 ASP A 44 1 O VAL A 42 N ILE A 20 SHEET 3 AA1 9 ILE A 68 ARG A 72 1 O ILE A 70 N ILE A 43 SHEET 4 AA1 9 GLY A 91 VAL A 94 1 O GLY A 91 N VAL A 71 SHEET 5 AA1 9 MET A 145 ILE A 150 1 O MET A 145 N ILE A 92 SHEET 6 AA1 9 MET A 170 GLU A 173 1 O VAL A 172 N ALA A 148 SHEET 7 AA1 9 HIS A 210 ALA A 213 1 O CYS A 212 N GLU A 173 SHEET 8 AA1 9 THR A 231 ASP A 236 1 O ILE A 233 N ALA A 213 SHEET 9 AA1 9 VAL A 17 ASN A 22 1 N GLY A 19 O PHE A 232 CISPEP 1 TYR A 113 PRO A 114 0 7.02 SITE 1 AC1 9 GLU A 46 HIS A 47 ARG A 72 PRO A 95 SITE 2 AC1 9 HIS A 96 TYR A 113 SER A 119 GLN A 151 SITE 3 AC1 9 ASP A 177 CRYST1 77.240 77.240 75.810 90.00 90.00 120.00 P 3 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012947 0.007475 0.000000 0.00000 SCALE2 0.000000 0.014950 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013191 0.00000