HEADER LIGASE/ANTIBIOTIC 26-JUN-14 4TVA TITLE UNIVERSAL PATHWAY FOR POST-TRANSFER EDITING REACTIONS: INSIGHT FROM TITLE 2 CRYSTAL STRUCTURE OF TTHPHERS WITH PUROMYCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHENYLALANYL-TRNA SYNTHETASE ALPHA SUBUNIT,PHERS; COMPND 5 EC: 6.1.1.20; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PHENYLALANINE--TRNA LIGASE BETA SUBUNIT; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PHENYLALANYL-TRNA SYNTHETASE BETA SUBUNIT,PHERS; COMPND 10 EC: 6.1.1.20 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 6 ORGANISM_TAXID: 274 KEYWDS PUROMYCINE, EDITING, TRNA, PHERS, LIGASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.SAFRO,L.KLIPCAN,D.TWOROWSKI,M.PERETZ REVDAT 5 27-SEP-23 4TVA 1 REMARK REVDAT 4 07-OCT-15 4TVA 1 REMARK REVDAT 3 15-APR-15 4TVA 1 JRNL REVDAT 2 01-APR-15 4TVA 1 JRNL REVDAT 1 18-MAR-15 4TVA 0 JRNL AUTH D.TWOROWSKI,L.KLIPCAN,M.PERETZ,N.MOOR,M.G.SAFRO JRNL TITL UNIVERSAL PATHWAY FOR POSTTRANSFER EDITING REACTIONS: JRNL TITL 2 INSIGHTS FROM THE CRYSTAL STRUCTURE OF TTPHERS WITH JRNL TITL 3 PUROMYCIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 3967 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 25775602 JRNL DOI 10.1073/PNAS.1414852112 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 71443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.710 REMARK 3 FREE R VALUE TEST SET COUNT : 1935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.0594 - 6.2363 0.99 5305 150 0.1933 0.1989 REMARK 3 2 6.2363 - 4.9599 0.98 5091 145 0.2038 0.1933 REMARK 3 3 4.9599 - 4.3359 0.97 5009 138 0.1875 0.2051 REMARK 3 4 4.3359 - 3.9407 0.95 4898 139 0.2178 0.2654 REMARK 3 5 3.9407 - 3.6590 0.95 4884 132 0.2460 0.2350 REMARK 3 6 3.6590 - 3.4437 0.97 4988 141 0.2705 0.2669 REMARK 3 7 3.4437 - 3.2716 0.97 4941 139 0.2775 0.3258 REMARK 3 8 3.2716 - 3.1294 0.96 4929 135 0.3065 0.3240 REMARK 3 9 3.1294 - 3.0091 0.95 4848 134 0.3408 0.3543 REMARK 3 10 3.0091 - 2.9054 0.95 4878 135 0.3572 0.3616 REMARK 3 11 2.9054 - 2.8146 0.96 4893 133 0.3681 0.3283 REMARK 3 12 2.8146 - 2.7342 0.96 4949 138 0.3720 0.2966 REMARK 3 13 2.7342 - 2.6623 0.97 4934 142 0.3561 0.4155 REMARK 3 14 2.6623 - 2.5974 0.97 4961 134 0.3761 0.4165 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 8520 REMARK 3 ANGLE : 1.456 11579 REMARK 3 CHIRALITY : 0.101 1241 REMARK 3 PLANARITY : 0.010 1545 REMARK 3 DIHEDRAL : 16.550 3191 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000201951. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74123 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 27.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1PYS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM AMMONIUM REMARK 280 SULFATE 28% OF SATURATION, 20 MM IMIDAZOLE, PH 7.7, 10 MM MGCL2, REMARK 280 1 MM NAN3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.32800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.16400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.16400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.32800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 79870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 504 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 902 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 ILE A 9 REMARK 465 GLN A 10 REMARK 465 ASN A 11 REMARK 465 ALA A 12 REMARK 465 ARG A 13 REMARK 465 ASP A 14 REMARK 465 LEU A 15 REMARK 465 GLU A 16 REMARK 465 GLU A 17 REMARK 465 LEU A 18 REMARK 465 LYS A 19 REMARK 465 ALA A 20 REMARK 465 LEU A 21 REMARK 465 LYS A 22 REMARK 465 ALA A 23 REMARK 465 ARG A 24 REMARK 465 TYR A 25 REMARK 465 LEU A 26 REMARK 465 GLY A 27 REMARK 465 LYS A 28 REMARK 465 LYS A 29 REMARK 465 GLY A 30 REMARK 465 LEU A 31 REMARK 465 LEU A 32 REMARK 465 THR A 33 REMARK 465 GLN A 34 REMARK 465 GLU A 35 REMARK 465 MET A 36 REMARK 465 LYS A 37 REMARK 465 GLY A 38 REMARK 465 LEU A 39 REMARK 465 SER A 40 REMARK 465 ALA A 41 REMARK 465 LEU A 42 REMARK 465 PRO A 43 REMARK 465 LEU A 44 REMARK 465 GLU A 45 REMARK 465 GLU A 46 REMARK 465 ARG A 47 REMARK 465 ARG A 48 REMARK 465 LYS A 49 REMARK 465 ARG A 50 REMARK 465 GLY A 51 REMARK 465 GLN A 52 REMARK 465 GLU A 53 REMARK 465 LEU A 54 REMARK 465 ASN A 55 REMARK 465 ALA A 56 REMARK 465 ILE A 57 REMARK 465 LYS A 58 REMARK 465 ALA A 59 REMARK 465 ALA A 60 REMARK 465 LEU A 61 REMARK 465 GLU A 62 REMARK 465 ALA A 63 REMARK 465 ALA A 64 REMARK 465 LEU A 65 REMARK 465 GLU A 66 REMARK 465 ALA A 67 REMARK 465 ARG A 68 REMARK 465 GLU A 69 REMARK 465 LYS A 70 REMARK 465 ALA A 71 REMARK 465 LEU A 72 REMARK 465 GLU A 73 REMARK 465 GLU A 74 REMARK 465 ALA A 75 REMARK 465 ALA A 76 REMARK 465 LEU A 77 REMARK 465 LYS A 78 REMARK 465 GLU A 79 REMARK 465 ALA A 80 REMARK 465 LEU A 81 REMARK 465 GLU A 82 REMARK 465 ARG A 83 REMARK 465 GLU A 84 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ARG B 780 REMARK 475 GLY B 781 REMARK 475 LEU B 782 REMARK 475 ASP B 783 REMARK 475 THR B 784 REMARK 475 PRO B 785 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 323 N1 PUY B 801 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 38 N - CA - C ANGL. DEV. = 19.1 DEGREES REMARK 500 MET B 260 O - C - N ANGL. DEV. = -10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 87 108.31 -51.85 REMARK 500 PHE A 134 -65.41 -123.78 REMARK 500 ASP A 209 -145.99 -125.70 REMARK 500 GLU A 262 111.71 -177.17 REMARK 500 VAL A 286 127.61 -37.72 REMARK 500 VAL A 349 26.13 -67.27 REMARK 500 SER B 17 167.42 176.45 REMARK 500 ARG B 34 141.18 -178.77 REMARK 500 PHE B 39 69.63 -107.55 REMARK 500 LEU B 99 -27.03 -27.10 REMARK 500 LYS B 102 154.25 -34.61 REMARK 500 GLN B 109 51.14 38.34 REMARK 500 ARG B 164 58.66 -113.68 REMARK 500 PRO B 199 37.79 -68.95 REMARK 500 ARG B 222 79.73 -117.10 REMARK 500 LEU B 283 122.60 -172.46 REMARK 500 VAL B 316 -56.02 -121.41 REMARK 500 ASP B 365 107.90 -53.97 REMARK 500 SER B 418 49.23 -144.06 REMARK 500 ARG B 525 75.92 51.62 REMARK 500 LEU B 534 2.93 -68.56 REMARK 500 ASN B 535 59.21 -162.94 REMARK 500 ARG B 564 67.40 -114.79 REMARK 500 ARG B 567 -178.87 -175.87 REMARK 500 ALA B 568 133.45 175.76 REMARK 500 ARG B 578 99.78 177.66 REMARK 500 GLU B 579 -34.87 73.61 REMARK 500 GLU B 601 151.71 -49.02 REMARK 500 ARG B 625 147.76 177.55 REMARK 500 GLN B 629 136.45 -176.65 REMARK 500 LEU B 634 -161.95 -104.05 REMARK 500 VAL B 638 70.98 -116.56 REMARK 500 PRO B 666 -178.55 -63.18 REMARK 500 ALA B 683 54.12 -108.11 REMARK 500 PHE B 684 118.03 -19.21 REMARK 500 LEU B 697 134.56 164.74 REMARK 500 THR B 705 123.09 -17.67 REMARK 500 PRO B 720 20.58 -77.10 REMARK 500 GLU B 723 -72.04 -86.76 REMARK 500 LEU B 725 94.18 174.76 REMARK 500 ASP B 729 140.46 -172.25 REMARK 500 GLN B 732 89.61 47.31 REMARK 500 PRO B 735 72.14 -104.31 REMARK 500 PRO B 737 93.64 -50.70 REMARK 500 GLU B 738 117.33 -28.85 REMARK 500 LYS B 753 -110.40 -104.08 REMARK 500 ARG B 754 159.07 -35.74 REMARK 500 ARG B 767 -8.02 -57.06 REMARK 500 ARG B 780 -37.61 -39.01 REMARK 500 ASP B 783 86.38 59.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET B 260 -16.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PHE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PUY B 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HFZ RELATED DB: PDB REMARK 900 3HFZ CONTAINS THE SAME PROTEIN COMPLEXED WITH M-TYROSINE DBREF 4TVA A 1 350 UNP P27001 SYFA_THETH 1 350 DBREF 4TVA B 1 785 UNP P27002 SYFB_THETH 1 785 SEQRES 1 A 350 MET LEU GLU GLU ALA LEU ALA ALA ILE GLN ASN ALA ARG SEQRES 2 A 350 ASP LEU GLU GLU LEU LYS ALA LEU LYS ALA ARG TYR LEU SEQRES 3 A 350 GLY LYS LYS GLY LEU LEU THR GLN GLU MET LYS GLY LEU SEQRES 4 A 350 SER ALA LEU PRO LEU GLU GLU ARG ARG LYS ARG GLY GLN SEQRES 5 A 350 GLU LEU ASN ALA ILE LYS ALA ALA LEU GLU ALA ALA LEU SEQRES 6 A 350 GLU ALA ARG GLU LYS ALA LEU GLU GLU ALA ALA LEU LYS SEQRES 7 A 350 GLU ALA LEU GLU ARG GLU ARG VAL ASP VAL SER LEU PRO SEQRES 8 A 350 GLY ALA SER LEU PHE SER GLY GLY LEU HIS PRO ILE THR SEQRES 9 A 350 LEU MET GLU ARG GLU LEU VAL GLU ILE PHE ARG ALA LEU SEQRES 10 A 350 GLY TYR GLN ALA VAL GLU GLY PRO GLU VAL GLU SER GLU SEQRES 11 A 350 PHE PHE ASN PHE ASP ALA LEU ASN ILE PRO GLU HIS HIS SEQRES 12 A 350 PRO ALA ARG ASP MET TRP ASP THR PHE TRP LEU THR GLY SEQRES 13 A 350 GLU GLY PHE ARG LEU GLU GLY PRO LEU GLY GLU GLU VAL SEQRES 14 A 350 GLU GLY ARG LEU LEU LEU ARG THR HIS THR SER PRO MET SEQRES 15 A 350 GLN VAL ARG TYR MET VAL ALA HIS THR PRO PRO PHE ARG SEQRES 16 A 350 ILE VAL VAL PRO GLY ARG VAL PHE ARG PHE GLU GLN THR SEQRES 17 A 350 ASP ALA THR HIS GLU ALA VAL PHE HIS GLN LEU GLU GLY SEQRES 18 A 350 LEU VAL VAL GLY GLU GLY ILE ALA MET ALA HIS LEU LYS SEQRES 19 A 350 GLY ALA ILE TYR GLU LEU ALA GLN ALA LEU PHE GLY PRO SEQRES 20 A 350 ASP SER LYS VAL ARG PHE GLN PRO VAL TYR PHE PRO PHE SEQRES 21 A 350 VAL GLU PRO GLY ALA GLN PHE ALA VAL TRP TRP PRO GLU SEQRES 22 A 350 GLY GLY LYS TRP LEU GLU LEU GLY GLY ALA GLY MET VAL SEQRES 23 A 350 HIS PRO LYS VAL PHE GLN ALA VAL ASP ALA TYR ARG GLU SEQRES 24 A 350 ARG LEU GLY LEU PRO PRO ALA TYR ARG GLY VAL THR GLY SEQRES 25 A 350 PHE ALA PHE GLY LEU GLY VAL GLU ARG LEU ALA MET LEU SEQRES 26 A 350 ARG TYR GLY ILE PRO ASP ILE ARG TYR PHE PHE GLY GLY SEQRES 27 A 350 ARG LEU LYS PHE LEU GLU GLN PHE LYS GLY VAL LEU SEQRES 1 B 785 MET ARG VAL PRO PHE SER TRP LEU LYS ALA TYR VAL PRO SEQRES 2 B 785 GLU LEU GLU SER PRO GLU VAL LEU GLU GLU ARG LEU ALA SEQRES 3 B 785 GLY LEU GLY PHE GLU THR ASP ARG ILE GLU ARG VAL PHE SEQRES 4 B 785 PRO ILE PRO ARG GLY VAL VAL PHE ALA ARG VAL LEU GLU SEQRES 5 B 785 ALA HIS PRO ILE PRO GLY THR ARG LEU LYS ARG LEU VAL SEQRES 6 B 785 LEU ASP ALA GLY ARG THR VAL GLU VAL VAL SER GLY ALA SEQRES 7 B 785 GLU ASN ALA ARG LYS GLY ILE GLY VAL ALA LEU ALA LEU SEQRES 8 B 785 PRO GLY THR GLU LEU PRO GLY LEU GLY GLN LYS VAL GLY SEQRES 9 B 785 GLU ARG VAL ILE GLN GLY VAL ARG SER PHE GLY MET ALA SEQRES 10 B 785 LEU SER PRO ARG GLU LEU GLY VAL GLY GLU TYR GLY GLY SEQRES 11 B 785 GLY LEU LEU GLU PHE PRO GLU ASP ALA LEU PRO PRO GLY SEQRES 12 B 785 THR PRO LEU SER GLU ALA TRP PRO GLU GLU VAL VAL LEU SEQRES 13 B 785 ASP LEU GLU VAL THR PRO ASN ARG PRO ASP ALA LEU GLY SEQRES 14 B 785 LEU LEU GLY LEU ALA ARG ASP LEU HIS ALA LEU GLY TYR SEQRES 15 B 785 ALA LEU VAL GLU PRO GLU ALA ALA LEU LYS ALA GLU ALA SEQRES 16 B 785 LEU PRO LEU PRO PHE ALA LEU LYS VAL GLU ASP PRO GLU SEQRES 17 B 785 GLY ALA PRO HIS PHE THR LEU GLY TYR ALA PHE GLY LEU SEQRES 18 B 785 ARG VAL ALA PRO SER PRO LEU TRP MET GLN ARG ALA LEU SEQRES 19 B 785 PHE ALA ALA GLY MET ARG PRO ILE ASN ASN VAL VAL ASP SEQRES 20 B 785 VAL THR ASN TYR VAL MET LEU GLU ARG ALA GLN PRO MET SEQRES 21 B 785 HIS ALA PHE ASP LEU ARG PHE VAL GLY GLU GLY ILE ALA SEQRES 22 B 785 VAL ARG ARG ALA ARG GLU GLY GLU ARG LEU LYS THR LEU SEQRES 23 B 785 ASP GLY VAL GLU ARG THR LEU HIS PRO GLU ASP LEU VAL SEQRES 24 B 785 ILE ALA GLY TRP ARG GLY GLU GLU SER PHE PRO LEU GLY SEQRES 25 B 785 LEU ALA GLY VAL MET GLY GLY ALA GLU SER GLU VAL ARG SEQRES 26 B 785 GLU ASP THR GLU ALA ILE ALA LEU GLU VAL ALA CYS PHE SEQRES 27 B 785 ASP PRO VAL SER ILE ARG LYS THR ALA ARG ARG HIS GLY SEQRES 28 B 785 LEU ARG THR GLU ALA SER HIS ARG PHE GLU ARG GLY VAL SEQRES 29 B 785 ASP PRO LEU GLY GLN VAL PRO ALA GLN ARG ARG ALA LEU SEQRES 30 B 785 SER LEU LEU GLN ALA LEU ALA GLY ALA ARG VAL ALA GLU SEQRES 31 B 785 ALA LEU LEU GLU ALA GLY SER PRO LYS PRO PRO GLU ALA SEQRES 32 B 785 ILE PRO PHE ARG PRO GLU TYR ALA ASN ARG LEU LEU GLY SEQRES 33 B 785 THR SER TYR PRO GLU ALA GLU GLN ILE ALA ILE LEU LYS SEQRES 34 B 785 ARG LEU GLY CYS ARG VAL GLU GLY GLU GLY PRO THR TYR SEQRES 35 B 785 ARG VAL THR PRO PRO SER HIS ARG LEU ASP LEU ARG LEU SEQRES 36 B 785 GLU GLU ASP LEU VAL GLU GLU VAL ALA ARG ILE GLN GLY SEQRES 37 B 785 TYR GLU THR ILE PRO LEU ALA LEU PRO ALA PHE PHE PRO SEQRES 38 B 785 ALA PRO ASP ASN ARG GLY VAL GLU ALA PRO TYR ARG LYS SEQRES 39 B 785 GLU GLN ARG LEU ARG GLU VAL LEU SER GLY LEU GLY PHE SEQRES 40 B 785 GLN GLU VAL TYR THR TYR SER PHE MET ASP PRO GLU ASP SEQRES 41 B 785 ALA ARG ARG PHE ARG LEU ASP PRO PRO ARG LEU LEU LEU SEQRES 42 B 785 LEU ASN PRO LEU ALA PRO GLU LYS ALA ALA LEU ARG THR SEQRES 43 B 785 HIS LEU PHE PRO GLY LEU VAL ARG VAL LEU LYS GLU ASN SEQRES 44 B 785 LEU ASP LEU ASP ARG PRO GLU ARG ALA LEU LEU PHE GLU SEQRES 45 B 785 VAL GLY ARG VAL PHE ARG GLU ARG GLU GLU THR HIS LEU SEQRES 46 B 785 ALA GLY LEU LEU PHE GLY GLU GLY VAL GLY LEU PRO TRP SEQRES 47 B 785 ALA LYS GLU ARG LEU SER GLY TYR PHE LEU LEU LYS GLY SEQRES 48 B 785 TYR LEU GLU ALA LEU PHE ALA ARG LEU GLY LEU ALA PHE SEQRES 49 B 785 ARG VAL GLU ALA GLN ALA PHE PRO PHE LEU HIS PRO GLY SEQRES 50 B 785 VAL SER GLY ARG VAL LEU VAL GLU GLY GLU GLU VAL GLY SEQRES 51 B 785 PHE LEU GLY ALA LEU HIS PRO GLU ILE ALA GLN GLU LEU SEQRES 52 B 785 GLU LEU PRO PRO VAL HIS LEU PHE GLU LEU ARG LEU PRO SEQRES 53 B 785 LEU PRO ASP LYS PRO LEU ALA PHE GLN ASP PRO SER ARG SEQRES 54 B 785 HIS PRO ALA ALA PHE ARG ASP LEU ALA VAL VAL VAL PRO SEQRES 55 B 785 ALA PRO THR PRO TYR GLY GLU VAL GLU ALA LEU VAL ARG SEQRES 56 B 785 GLU ALA ALA GLY PRO TYR LEU GLU SER LEU ALA LEU PHE SEQRES 57 B 785 ASP LEU TYR GLN GLY PRO PRO LEU PRO GLU GLY HIS LYS SEQRES 58 B 785 SER LEU ALA PHE HIS LEU ARG PHE ARG HIS PRO LYS ARG SEQRES 59 B 785 THR LEU ARG ASP GLU GLU VAL GLU GLU ALA VAL SER ARG SEQRES 60 B 785 VAL ALA GLU ALA LEU ARG ALA ARG GLY PHE GLY LEU ARG SEQRES 61 B 785 GLY LEU ASP THR PRO HET PHE A 401 12 HET PUY B 801 34 HETNAM PHE PHENYLALANINE HETNAM PUY PUROMYCIN FORMUL 3 PHE C9 H11 N O2 FORMUL 4 PUY C22 H29 N7 O5 FORMUL 5 HOH *175(H2 O) HELIX 1 AA1 HIS A 101 ALA A 116 1 16 HELIX 2 AA2 GLU A 130 PHE A 134 1 5 HELIX 3 AA3 ASP A 135 ASN A 138 5 4 HELIX 4 AA4 HIS A 143 TRP A 149 5 7 HELIX 5 AA5 SER A 180 HIS A 190 1 11 HELIX 6 AA6 ALA A 229 GLY A 246 1 18 HELIX 7 AA7 HIS A 287 ARG A 300 1 14 HELIX 8 AA8 VAL A 319 GLY A 328 1 10 HELIX 9 AA9 ARG A 333 GLY A 338 1 6 HELIX 10 AB1 ARG A 339 GLU A 344 1 6 HELIX 11 AB2 GLN A 345 LYS A 347 5 3 HELIX 12 AB3 PHE B 5 LYS B 9 1 5 HELIX 13 AB4 SER B 17 GLY B 29 1 13 HELIX 14 AB5 SER B 119 GLY B 124 1 6 HELIX 15 AB6 PRO B 145 TRP B 150 5 6 HELIX 16 AB7 ARG B 164 LEU B 168 5 5 HELIX 17 AB8 GLY B 169 LEU B 180 1 12 HELIX 18 AB9 PRO B 227 ALA B 237 1 11 HELIX 19 AC1 ASN B 243 ALA B 257 1 15 HELIX 20 AC2 ARG B 266 VAL B 268 5 3 HELIX 21 AC3 ASP B 339 HIS B 350 1 12 HELIX 22 AC4 THR B 354 GLY B 363 1 10 HELIX 23 AC5 GLY B 368 GLY B 385 1 18 HELIX 24 AC6 ARG B 407 GLY B 416 1 10 HELIX 25 AC7 PRO B 420 LEU B 431 1 12 HELIX 26 AC8 LEU B 455 GLY B 468 1 14 HELIX 27 AC9 TYR B 469 ILE B 472 5 4 HELIX 28 AD1 ALA B 482 ARG B 486 5 5 HELIX 29 AD2 GLU B 489 GLY B 506 1 18 HELIX 30 AD3 GLU B 519 PHE B 524 1 6 HELIX 31 AD4 ALA B 538 ALA B 542 5 5 HELIX 32 AD5 LEU B 548 ASP B 563 1 16 HELIX 33 AD6 SER B 604 GLY B 621 1 18 HELIX 34 AD7 HIS B 656 LEU B 663 1 8 HELIX 35 AD8 PRO B 706 GLY B 719 1 14 HELIX 36 AD9 ARG B 757 VAL B 765 1 9 HELIX 37 AE1 VAL B 765 GLU B 770 1 6 SHEET 1 AA1 7 GLN A 120 ALA A 121 0 SHEET 2 AA1 7 PHE A 194 PHE A 203 1 O ARG A 195 N GLN A 120 SHEET 3 AA1 7 VAL A 215 GLY A 225 -1 O LEU A 222 N ILE A 196 SHEET 4 AA1 7 THR A 311 GLY A 318 -1 O THR A 311 N GLY A 225 SHEET 5 AA1 7 LYS A 276 VAL A 286 -1 N GLY A 284 O ALA A 314 SHEET 6 AA1 7 VAL A 261 TRP A 271 -1 N VAL A 269 O LEU A 278 SHEET 7 AA1 7 VAL A 251 GLN A 254 -1 N GLN A 254 O GLN A 266 SHEET 1 AA2 2 VAL A 127 SER A 129 0 SHEET 2 AA2 2 LEU A 173 LEU A 175 -1 O LEU A 174 N GLU A 128 SHEET 1 AA3 2 LEU A 154 THR A 155 0 SHEET 2 AA3 2 LEU B 532 LEU B 533 -1 O LEU B 532 N THR A 155 SHEET 1 AA4 3 ARG B 2 PRO B 4 0 SHEET 2 AA4 3 VAL B 154 LEU B 158 -1 O LEU B 156 N VAL B 3 SHEET 3 AA4 3 THR B 32 ARG B 37 -1 N GLU B 36 O VAL B 155 SHEET 1 AA5 5 THR B 71 SER B 76 0 SHEET 2 AA5 5 LYS B 62 ASP B 67 -1 N LEU B 64 O VAL B 74 SHEET 3 AA5 5 VAL B 45 PRO B 55 -1 N HIS B 54 O ARG B 63 SHEET 4 AA5 5 GLY B 86 ALA B 90 -1 O LEU B 89 N VAL B 46 SHEET 5 AA5 5 MET B 116 ALA B 117 -1 O MET B 116 N ALA B 90 SHEET 1 AA6 2 GLU B 105 ILE B 108 0 SHEET 2 AA6 2 VAL B 111 PHE B 114 -1 O SER B 113 N ARG B 106 SHEET 1 AA7 5 ALA B 201 VAL B 204 0 SHEET 2 AA7 5 GLY B 271 ARG B 276 1 O ILE B 272 N ALA B 201 SHEET 3 AA7 5 LEU B 298 ARG B 304 -1 O ALA B 301 N ALA B 273 SHEET 4 AA7 5 GLU B 307 LEU B 313 -1 O LEU B 311 N ILE B 300 SHEET 5 AA7 5 MET B 317 GLY B 318 -1 O MET B 317 N LEU B 313 SHEET 1 AA8 4 MET B 260 ASP B 264 0 SHEET 2 AA8 4 ILE B 331 CYS B 337 -1 O GLU B 334 N HIS B 261 SHEET 3 AA8 4 HIS B 212 PHE B 219 -1 N GLY B 216 O LEU B 333 SHEET 4 AA8 4 ARG B 387 VAL B 388 -1 O ARG B 387 N PHE B 219 SHEET 1 AA9 4 MET B 260 ASP B 264 0 SHEET 2 AA9 4 ILE B 331 CYS B 337 -1 O GLU B 334 N HIS B 261 SHEET 3 AA9 4 HIS B 212 PHE B 219 -1 N GLY B 216 O LEU B 333 SHEET 4 AA9 4 LEU B 393 ALA B 395 -1 O LEU B 393 N LEU B 215 SHEET 1 AB1 2 ARG B 282 LYS B 284 0 SHEET 2 AB1 2 GLU B 290 THR B 292 -1 O ARG B 291 N LEU B 283 SHEET 1 AB2 3 ILE B 404 PHE B 406 0 SHEET 2 AB2 3 TYR B 442 THR B 445 -1 O VAL B 444 N ILE B 404 SHEET 3 AB2 3 ARG B 434 GLU B 436 -1 N ARG B 434 O THR B 445 SHEET 1 AB3 7 GLN B 508 GLU B 509 0 SHEET 2 AB3 7 ARG B 567 PHE B 577 1 O LEU B 569 N GLN B 508 SHEET 3 AB3 7 GLU B 581 GLY B 591 -1 O HIS B 584 N GLY B 574 SHEET 4 AB3 7 HIS B 669 LEU B 675 -1 O LEU B 675 N THR B 583 SHEET 5 AB3 7 GLU B 648 LEU B 655 -1 N GLY B 653 O LEU B 670 SHEET 6 AB3 7 LEU B 634 VAL B 644 -1 N VAL B 642 O GLY B 650 SHEET 7 AB3 7 PHE B 624 ALA B 628 -1 N ARG B 625 O LEU B 643 SHEET 1 AB4 2 PHE B 515 MET B 516 0 SHEET 2 AB4 2 ALA B 543 LEU B 544 -1 O ALA B 543 N MET B 516 SHEET 1 AB5 3 ALA B 693 LEU B 697 0 SHEET 2 AB5 3 HIS B 740 PHE B 749 -1 O PHE B 749 N ALA B 693 SHEET 3 AB5 3 VAL B 700 PRO B 702 -1 N VAL B 701 O LYS B 741 SHEET 1 AB6 3 ALA B 693 LEU B 697 0 SHEET 2 AB6 3 HIS B 740 PHE B 749 -1 O PHE B 749 N ALA B 693 SHEET 3 AB6 3 LEU B 722 LEU B 730 -1 N ASP B 729 O ALA B 744 CISPEP 1 PRO A 192 PRO A 193 0 -0.04 CISPEP 2 GLU A 262 PRO A 263 0 -0.07 CISPEP 3 GLY B 439 PRO B 440 0 0.31 CISPEP 4 LEU B 675 PRO B 676 0 0.06 CISPEP 5 PRO B 734 PRO B 735 0 -0.08 SITE 1 AC1 13 TRP A 149 HIS A 178 SER A 180 ARG A 204 SITE 2 AC1 13 GLN A 218 GLU A 220 PHE A 258 PHE A 260 SITE 3 AC1 13 GLY A 282 ALA A 283 ALA A 314 PHE A 315 SITE 4 AC1 13 GLY A 316 SITE 1 AC2 11 VAL B 246 THR B 249 ASN B 250 PRO B 259 SITE 2 AC2 11 MET B 260 HIS B 261 LEU B 286 GLY B 318 SITE 3 AC2 11 GLU B 323 GLU B 334 HOH B 953 CRYST1 173.475 173.475 138.492 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005765 0.003328 0.000000 0.00000 SCALE2 0.000000 0.006656 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007221 0.00000