HEADER TRANSFERASE 27-JUN-14 4TVI TITLE X-RAY CRYSTAL STRUCTURE OF AN AMINOTRANSFERASE FROM BRUCELLA ABORTUS TITLE 2 BOUND TO THE CO-FACTOR PLP COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOTRANSFERASE, CLASS IV; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 59-348; COMPND 5 EC: 2.6.1.42; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA ABORTUS; SOURCE 3 ORGANISM_TAXID: 359391; SOURCE 4 STRAIN: 2308; SOURCE 5 GENE: BAB2_0572; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE PLP, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 2 CENTER FOR INFECTIOUS DISEASE, SSGCID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 15-NOV-23 4TVI 1 REMARK REVDAT 4 27-SEP-23 4TVI 1 REMARK REVDAT 3 11-DEC-19 4TVI 1 REMARK REVDAT 2 13-SEP-17 4TVI 1 COMPND SOURCE KEYWDS JRNL REVDAT 2 2 1 REMARK HETNAM FORMUL REVDAT 1 30-JUL-14 4TVI 0 JRNL AUTH J.W.FAIRMAN,D.R.DAVIES,D.LORIMER,T.E.EDWARDS JRNL TITL X-RAY CRYSTAL STRUCTURE OF AN AMINOTRANSFERASE FROM BRUCELLA JRNL TITL 2 ABORTUS BOUND TO THE CO-FACTOR PLP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1702) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 33658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0973 - 4.8058 0.99 2871 160 0.1392 0.1651 REMARK 3 2 4.8058 - 3.8152 0.99 2768 142 0.1250 0.1719 REMARK 3 3 3.8152 - 3.3331 0.99 2728 124 0.1499 0.2064 REMARK 3 4 3.3331 - 3.0285 0.99 2677 145 0.1621 0.1908 REMARK 3 5 3.0285 - 2.8114 0.99 2675 134 0.1752 0.2588 REMARK 3 6 2.8114 - 2.6457 0.98 2654 132 0.1776 0.2073 REMARK 3 7 2.6457 - 2.5132 0.99 2647 117 0.1722 0.2332 REMARK 3 8 2.5132 - 2.4038 0.98 2649 136 0.1725 0.2447 REMARK 3 9 2.4038 - 2.3113 0.97 2624 129 0.1818 0.2541 REMARK 3 10 2.3113 - 2.2315 0.97 2566 142 0.1823 0.2639 REMARK 3 11 2.2315 - 2.1618 0.99 2623 143 0.1806 0.2371 REMARK 3 12 2.1618 - 2.1000 0.95 2541 131 0.2013 0.2666 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4488 REMARK 3 ANGLE : 0.881 6121 REMARK 3 CHIRALITY : 0.034 683 REMARK 3 PLANARITY : 0.005 793 REMARK 3 DIHEDRAL : 12.424 1614 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2068 16.0748 38.3832 REMARK 3 T TENSOR REMARK 3 T11: 0.1299 T22: 0.1482 REMARK 3 T33: 0.2038 T12: -0.0212 REMARK 3 T13: -0.0132 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.6332 L22: 2.1837 REMARK 3 L33: 0.6045 L12: -0.2971 REMARK 3 L13: 0.6100 L23: -0.5373 REMARK 3 S TENSOR REMARK 3 S11: -0.0898 S12: 0.0884 S13: 0.0707 REMARK 3 S21: 0.1592 S22: 0.0084 S23: -0.3282 REMARK 3 S31: -0.0812 S32: 0.0440 S33: 0.0744 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2341 10.0895 30.2476 REMARK 3 T TENSOR REMARK 3 T11: 0.1318 T22: 0.1385 REMARK 3 T33: 0.1590 T12: 0.0094 REMARK 3 T13: 0.0158 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 1.5479 L22: 1.1514 REMARK 3 L33: 0.9432 L12: 0.3890 REMARK 3 L13: 0.6935 L23: -0.0524 REMARK 3 S TENSOR REMARK 3 S11: -0.0630 S12: 0.0688 S13: -0.0547 REMARK 3 S21: -0.0867 S22: 0.0394 S23: -0.0077 REMARK 3 S31: 0.0125 S32: 0.0509 S33: 0.0069 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9297 24.4403 23.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.1588 T22: 0.1328 REMARK 3 T33: 0.1569 T12: -0.0059 REMARK 3 T13: -0.0406 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.7821 L22: 1.8928 REMARK 3 L33: 1.3382 L12: 0.0301 REMARK 3 L13: 0.1430 L23: -0.3893 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: 0.1004 S13: 0.1275 REMARK 3 S21: -0.2165 S22: 0.0609 S23: 0.2188 REMARK 3 S31: -0.0933 S32: 0.0187 S33: 0.0090 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1704 -9.9604 32.9068 REMARK 3 T TENSOR REMARK 3 T11: 0.1050 T22: 0.1752 REMARK 3 T33: 0.1789 T12: 0.0140 REMARK 3 T13: 0.0293 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.6924 L22: 2.4646 REMARK 3 L33: 0.4645 L12: 0.1517 REMARK 3 L13: -0.3034 L23: -0.4004 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: 0.0333 S13: -0.0379 REMARK 3 S21: -0.1060 S22: -0.0603 S23: -0.3032 REMARK 3 S31: 0.0376 S32: 0.0644 S33: 0.0549 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 152 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7577 -7.3919 44.0886 REMARK 3 T TENSOR REMARK 3 T11: 0.1092 T22: 0.1381 REMARK 3 T33: 0.1518 T12: -0.0102 REMARK 3 T13: 0.0037 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.9353 L22: 1.1943 REMARK 3 L33: 1.6207 L12: 0.0568 REMARK 3 L13: -0.2940 L23: -0.5895 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: -0.0546 S13: 0.0309 REMARK 3 S21: 0.1417 S22: -0.0381 S23: 0.0238 REMARK 3 S31: -0.1670 S32: 0.1004 S33: 0.0631 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 219 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0603 -23.0076 45.5870 REMARK 3 T TENSOR REMARK 3 T11: 0.1546 T22: 0.1521 REMARK 3 T33: 0.1678 T12: -0.0037 REMARK 3 T13: 0.0204 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.8359 L22: 1.3889 REMARK 3 L33: 0.9379 L12: -0.2736 REMARK 3 L13: 0.2325 L23: -0.3011 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: -0.0657 S13: -0.1073 REMARK 3 S21: 0.1598 S22: -0.0536 S23: 0.1232 REMARK 3 S31: -0.0499 S32: -0.0057 S33: -0.0059 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND SEGID REMARK 3 SELECTION : CHAIN B AND SEGID REMARK 3 ATOM PAIRS NUMBER : 2428 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33664 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.880 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.05 REMARK 200 R MERGE FOR SHELL (I) : 0.37100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4JXU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1 A2 - 0.1 M CHES PH 9.50, 30% REMARK 280 PEG3000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.99500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.66000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.99500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.66000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 THR A 8 REMARK 465 GLN A 9 REMARK 465 GLY A 10 REMARK 465 PRO A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 MET A 14 REMARK 465 LEU A 15 REMARK 465 GLN A 16 REMARK 465 GLY A 17 REMARK 465 THR A 18 REMARK 465 ARG A 19 REMARK 465 GLU A 20 REMARK 465 MET A 21 REMARK 465 THR A 22 REMARK 465 ASP A 23 REMARK 465 THR A 24 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 THR B 3 REMARK 465 LEU B 4 REMARK 465 GLU B 5 REMARK 465 ALA B 6 REMARK 465 GLN B 7 REMARK 465 THR B 8 REMARK 465 GLN B 9 REMARK 465 GLY B 10 REMARK 465 PRO B 11 REMARK 465 GLY B 12 REMARK 465 SER B 13 REMARK 465 MET B 14 REMARK 465 LEU B 15 REMARK 465 GLN B 16 REMARK 465 GLY B 17 REMARK 465 THR B 18 REMARK 465 ARG B 19 REMARK 465 GLU B 20 REMARK 465 MET B 21 REMARK 465 THR B 22 REMARK 465 ASP B 23 REMARK 465 THR B 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 147 CG1 CG2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 ARG B 25 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 101 CG CD OE1 OE2 REMARK 470 VAL B 147 CG1 CG2 REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 ARG B 185 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 188 CG CD CE NZ REMARK 470 LYS B 255 CG CD CE NZ REMARK 470 LYS B 284 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 124 -157.40 -83.71 REMARK 500 THR A 127 -51.06 65.83 REMARK 500 ASN A 170 31.15 -85.50 REMARK 500 GLU A 206 -170.06 -176.53 REMARK 500 LYS A 273 -67.19 67.44 REMARK 500 ASP A 281 -117.98 50.90 REMARK 500 ASP B 124 -157.76 -82.90 REMARK 500 THR B 127 -49.99 67.10 REMARK 500 ASN B 170 37.52 -82.95 REMARK 500 GLU B 206 -168.50 -175.40 REMARK 500 LYS B 273 -71.21 67.57 REMARK 500 ASP B 281 -118.80 52.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BRABA.10478.A RELATED DB: TARGETTRACK DBREF 4TVI A 15 304 UNP Q2YKS6 Q2YKS6_BRUA2 59 348 DBREF 4TVI B 15 304 UNP Q2YKS6 Q2YKS6_BRUA2 59 348 SEQADV 4TVI MET A -7 UNP Q2YKS6 INITIATING METHIONINE SEQADV 4TVI ALA A -6 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI HIS A -5 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI HIS A -4 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI HIS A -3 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI HIS A -2 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI HIS A -1 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI HIS A 0 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI MET A 1 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI GLY A 2 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI THR A 3 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI LEU A 4 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI GLU A 5 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI ALA A 6 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI GLN A 7 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI THR A 8 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI GLN A 9 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI GLY A 10 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI PRO A 11 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI GLY A 12 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI SER A 13 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI MET A 14 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI MET B -7 UNP Q2YKS6 INITIATING METHIONINE SEQADV 4TVI ALA B -6 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI HIS B -5 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI HIS B -4 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI HIS B -3 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI HIS B -2 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI HIS B -1 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI HIS B 0 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI MET B 1 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI GLY B 2 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI THR B 3 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI LEU B 4 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI GLU B 5 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI ALA B 6 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI GLN B 7 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI THR B 8 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI GLN B 9 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI GLY B 10 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI PRO B 11 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI GLY B 12 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI SER B 13 UNP Q2YKS6 EXPRESSION TAG SEQADV 4TVI MET B 14 UNP Q2YKS6 EXPRESSION TAG SEQRES 1 A 312 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 312 ALA GLN THR GLN GLY PRO GLY SER MET LEU GLN GLY THR SEQRES 3 A 312 ARG GLU MET THR ASP THR ARG ALA MET TRP THR TYR TYR SEQRES 4 A 312 LYS GLY GLU TRP ARG GLU GLY ASP VAL ARG ILE LEU GLY SEQRES 5 A 312 ALA ALA SER GLN ALA THR TRP LEU GLY SER LEU VAL PHE SEQRES 6 A 312 ASP GLY ALA ARG LEU PHE GLU GLY VAL THR PRO ASP LEU SEQRES 7 A 312 ASP ARG HIS SER ALA ARG ALA ASN ASP SER ALA ARG ALA SEQRES 8 A 312 LEU GLY LEU GLU PRO THR LEU SER ALA ASN ASP ILE GLU SEQRES 9 A 312 ALA LEU ALA ARG GLU GLY LEU LYS LYS PHE ALA PRO ASP SEQRES 10 A 312 THR ASP VAL TYR ILE ARG PRO MET TYR TRP ALA GLU GLU SEQRES 11 A 312 GLY ASP ALA SER THR VAL ALA PRO LEU ALA SER SER THR SEQRES 12 A 312 ASP PHE ALA LEU CYS LEU GLU ALA ILE PRO MET VAL GLU SEQRES 13 A 312 PRO LYS GLY PHE THR ILE THR THR THR SER PHE ARG ARG SEQRES 14 A 312 PRO TYR LEU GLU VAL MET PRO VAL ASN ALA LLP ALA ALA SEQRES 15 A 312 CYS LEU TYR PRO ASN ASN ALA ARG MET LEU ARG GLU ALA SEQRES 16 A 312 LYS ALA LYS GLY PHE HIS ASN ALA LEU VAL THR ASP VAL SEQRES 17 A 312 LEU GLY ASN VAL ALA GLU THR ALA THR SER ASN VAL PHE SEQRES 18 A 312 MET VAL ARG GLY GLY GLU VAL PHE THR PRO VAL PRO ASN SEQRES 19 A 312 GLY THR PHE LEU ASN GLY ILE THR ARG GLN ARG VAL ILE SEQRES 20 A 312 LYS LEU LEU ARG GLU ALA GLY VAL SER VAL HIS GLU THR SEQRES 21 A 312 THR LEU LYS ILE GLU ASP PHE ARG GLU ALA ASP GLU ILE SEQRES 22 A 312 PHE SER THR GLY ASN MET SER LYS VAL VAL PRO ILE ILE SEQRES 23 A 312 GLY PHE ASP GLU ARG LYS LEU ASP TYR GLY LEU VAL THR SEQRES 24 A 312 LYS ARG ALA ARG ALA LEU TYR TRP GLU TRP ALA HIS ALA SEQRES 1 B 312 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 312 ALA GLN THR GLN GLY PRO GLY SER MET LEU GLN GLY THR SEQRES 3 B 312 ARG GLU MET THR ASP THR ARG ALA MET TRP THR TYR TYR SEQRES 4 B 312 LYS GLY GLU TRP ARG GLU GLY ASP VAL ARG ILE LEU GLY SEQRES 5 B 312 ALA ALA SER GLN ALA THR TRP LEU GLY SER LEU VAL PHE SEQRES 6 B 312 ASP GLY ALA ARG LEU PHE GLU GLY VAL THR PRO ASP LEU SEQRES 7 B 312 ASP ARG HIS SER ALA ARG ALA ASN ASP SER ALA ARG ALA SEQRES 8 B 312 LEU GLY LEU GLU PRO THR LEU SER ALA ASN ASP ILE GLU SEQRES 9 B 312 ALA LEU ALA ARG GLU GLY LEU LYS LYS PHE ALA PRO ASP SEQRES 10 B 312 THR ASP VAL TYR ILE ARG PRO MET TYR TRP ALA GLU GLU SEQRES 11 B 312 GLY ASP ALA SER THR VAL ALA PRO LEU ALA SER SER THR SEQRES 12 B 312 ASP PHE ALA LEU CYS LEU GLU ALA ILE PRO MET VAL GLU SEQRES 13 B 312 PRO LYS GLY PHE THR ILE THR THR THR SER PHE ARG ARG SEQRES 14 B 312 PRO TYR LEU GLU VAL MET PRO VAL ASN ALA LLP ALA ALA SEQRES 15 B 312 CYS LEU TYR PRO ASN ASN ALA ARG MET LEU ARG GLU ALA SEQRES 16 B 312 LYS ALA LYS GLY PHE HIS ASN ALA LEU VAL THR ASP VAL SEQRES 17 B 312 LEU GLY ASN VAL ALA GLU THR ALA THR SER ASN VAL PHE SEQRES 18 B 312 MET VAL ARG GLY GLY GLU VAL PHE THR PRO VAL PRO ASN SEQRES 19 B 312 GLY THR PHE LEU ASN GLY ILE THR ARG GLN ARG VAL ILE SEQRES 20 B 312 LYS LEU LEU ARG GLU ALA GLY VAL SER VAL HIS GLU THR SEQRES 21 B 312 THR LEU LYS ILE GLU ASP PHE ARG GLU ALA ASP GLU ILE SEQRES 22 B 312 PHE SER THR GLY ASN MET SER LYS VAL VAL PRO ILE ILE SEQRES 23 B 312 GLY PHE ASP GLU ARG LYS LEU ASP TYR GLY LEU VAL THR SEQRES 24 B 312 LYS ARG ALA ARG ALA LEU TYR TRP GLU TRP ALA HIS ALA MODRES 4TVI LLP A 172 LYS MODIFIED RESIDUE MODRES 4TVI LLP B 172 LYS MODIFIED RESIDUE HET LLP A 172 24 HET LLP B 172 24 HET EDO B 401 4 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *485(H2 O) HELIX 1 AA1 SER A 47 GLY A 53 1 7 HELIX 2 AA2 ASP A 69 LEU A 84 1 16 HELIX 3 AA3 SER A 91 LYS A 104 1 14 HELIX 4 AA4 LEU A 131 SER A 133 5 3 HELIX 5 AA5 ALA A 173 CYS A 175 5 3 HELIX 6 AA6 LEU A 176 GLY A 191 1 16 HELIX 7 AA7 GLY A 232 ALA A 245 1 14 HELIX 8 AA8 LYS A 255 GLU A 261 1 7 HELIX 9 AA9 GLY A 288 HIS A 303 1 16 HELIX 10 AB1 SER B 47 GLY B 53 1 7 HELIX 11 AB2 ASP B 69 LEU B 84 1 16 HELIX 12 AB3 SER B 91 LYS B 104 1 14 HELIX 13 AB4 LEU B 131 SER B 133 5 3 HELIX 14 AB5 ALA B 173 CYS B 175 5 3 HELIX 15 AB6 LEU B 176 LYS B 190 1 15 HELIX 16 AB7 GLY B 232 ALA B 245 1 14 HELIX 17 AB8 LYS B 255 GLU B 261 1 7 HELIX 18 AB9 GLY B 288 HIS B 303 1 16 SHEET 1 AA1 5 GLU A 34 GLU A 37 0 SHEET 2 AA1 5 MET A 27 TYR A 31 -1 N THR A 29 O ARG A 36 SHEET 3 AA1 5 THR A 135 ALA A 143 -1 O LEU A 141 N TRP A 28 SHEET 4 AA1 5 VAL A 112 ALA A 120 -1 N TYR A 113 O GLU A 142 SHEET 5 AA1 5 VAL A 56 PHE A 57 -1 N VAL A 56 O TYR A 118 SHEET 1 AA2 5 GLU A 34 GLU A 37 0 SHEET 2 AA2 5 MET A 27 TYR A 31 -1 N THR A 29 O ARG A 36 SHEET 3 AA2 5 THR A 135 ALA A 143 -1 O LEU A 141 N TRP A 28 SHEET 4 AA2 5 VAL A 112 ALA A 120 -1 N TYR A 113 O GLU A 142 SHEET 5 AA2 5 ALA A 60 LEU A 62 -1 N LEU A 62 O VAL A 112 SHEET 1 AA3 2 ARG A 41 GLY A 44 0 SHEET 2 AA3 2 ARG B 41 GLY B 44 -1 O LEU B 43 N LEU A 43 SHEET 1 AA4 8 VAL A 204 THR A 207 0 SHEET 2 AA4 8 ASN A 194 THR A 198 -1 N VAL A 197 O ALA A 205 SHEET 3 AA4 8 PHE A 152 THR A 156 1 N THR A 155 O LEU A 196 SHEET 4 AA4 8 LYS A 273 PHE A 280 1 O GLY A 279 N ILE A 154 SHEET 5 AA4 8 GLU A 264 GLY A 269 -1 N SER A 267 O VAL A 275 SHEET 6 AA4 8 ASN A 211 ARG A 216 -1 N PHE A 213 O PHE A 266 SHEET 7 AA4 8 GLU A 219 PRO A 223 -1 O PHE A 221 N MET A 214 SHEET 8 AA4 8 VAL A 249 THR A 252 1 O HIS A 250 N VAL A 220 SHEET 1 AA5 5 VAL A 204 THR A 207 0 SHEET 2 AA5 5 ASN A 194 THR A 198 -1 N VAL A 197 O ALA A 205 SHEET 3 AA5 5 PHE A 152 THR A 156 1 N THR A 155 O LEU A 196 SHEET 4 AA5 5 LYS A 273 PHE A 280 1 O GLY A 279 N ILE A 154 SHEET 5 AA5 5 ARG A 283 LYS A 284 -1 O ARG A 283 N PHE A 280 SHEET 1 AA6 5 GLU B 34 GLU B 37 0 SHEET 2 AA6 5 MET B 27 TYR B 31 -1 N THR B 29 O ARG B 36 SHEET 3 AA6 5 THR B 135 ALA B 143 -1 O LEU B 141 N TRP B 28 SHEET 4 AA6 5 VAL B 112 ALA B 120 -1 N TYR B 113 O GLU B 142 SHEET 5 AA6 5 VAL B 56 PHE B 57 -1 N VAL B 56 O TYR B 118 SHEET 1 AA7 5 GLU B 34 GLU B 37 0 SHEET 2 AA7 5 MET B 27 TYR B 31 -1 N THR B 29 O ARG B 36 SHEET 3 AA7 5 THR B 135 ALA B 143 -1 O LEU B 141 N TRP B 28 SHEET 4 AA7 5 VAL B 112 ALA B 120 -1 N TYR B 113 O GLU B 142 SHEET 5 AA7 5 ALA B 60 LEU B 62 -1 N LEU B 62 O VAL B 112 SHEET 1 AA8 8 VAL B 204 THR B 207 0 SHEET 2 AA8 8 ASN B 194 THR B 198 -1 N VAL B 197 O ALA B 205 SHEET 3 AA8 8 PHE B 152 THR B 156 1 N THR B 155 O LEU B 196 SHEET 4 AA8 8 LYS B 273 PHE B 280 1 O GLY B 279 N ILE B 154 SHEET 5 AA8 8 GLU B 264 GLY B 269 -1 N SER B 267 O VAL B 275 SHEET 6 AA8 8 ASN B 211 ARG B 216 -1 N PHE B 213 O PHE B 266 SHEET 7 AA8 8 GLU B 219 PRO B 223 -1 O PHE B 221 N MET B 214 SHEET 8 AA8 8 VAL B 249 THR B 252 1 O HIS B 250 N VAL B 220 SHEET 1 AA9 5 VAL B 204 THR B 207 0 SHEET 2 AA9 5 ASN B 194 THR B 198 -1 N VAL B 197 O ALA B 205 SHEET 3 AA9 5 PHE B 152 THR B 156 1 N THR B 155 O LEU B 196 SHEET 4 AA9 5 LYS B 273 PHE B 280 1 O GLY B 279 N ILE B 154 SHEET 5 AA9 5 ARG B 283 LYS B 284 -1 O ARG B 283 N PHE B 280 LINK C ALA A 171 N LLP A 172 1555 1555 1.33 LINK C LLP A 172 N ALA A 173 1555 1555 1.33 LINK C ALA B 171 N LLP B 172 1555 1555 1.33 LINK C LLP B 172 N ALA B 173 1555 1555 1.33 SITE 1 AC1 3 LLP B 172 TYR B 177 THR B 209 CRYST1 93.990 127.320 47.690 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010639 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007854 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020969 0.00000