HEADER HYDROLASE 30-JUN-14 4TWJ TITLE THE STRUCTURE OF SIR2AF2 BOUND TO A MYRISTOYLATED HISTONE PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACYLASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG 2,SIR2-AF2; COMPND 5 EC: 3.5.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H4 PEPTIDE; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 9-21; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126; SOURCE 5 GENE: COBB2, SIR2AF2, AF_0112; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 559292 KEYWDS SIRTUIN, DEMYRISTOYLATION, ARCHAEAL PROTEINS, HISTONE PEPTIDE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.E.RINGEL,C.ROMAN,C.WOLBERGER REVDAT 4 27-SEP-23 4TWJ 1 REMARK REVDAT 3 27-NOV-19 4TWJ 1 REMARK REVDAT 2 13-SEP-17 4TWJ 1 SOURCE JRNL REMARK REVDAT 1 03-DEC-14 4TWJ 0 JRNL AUTH A.E.RINGEL,C.ROMAN,C.WOLBERGER JRNL TITL ALTERNATE DEACYLATING SPECIFICITIES OF THE ARCHAEAL SIRTUINS JRNL TITL 2 SIR2AF1 AND SIR2AF2. JRNL REF PROTEIN SCI. V. 23 1686 2014 JRNL REFN ESSN 1469-896X JRNL PMID 25200501 JRNL DOI 10.1002/PRO.2546 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1528 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2078 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.1795 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.2055 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1906 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.62000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.769 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1975 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1904 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2652 ; 1.012 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4382 ; 0.710 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 243 ; 4.934 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;31.200 ;23.704 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 326 ;11.537 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;10.339 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 288 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2187 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 421 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4TWJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202349. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30123 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 42.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05007 REMARK 200 FOR THE DATA SET : 13.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1MA3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA-ACETATE PH 4.8, 14-18% (V/V) REMARK 280 2-PROPANOL, AND 14-15% (W/V) PEG 6,000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.62550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 30 REMARK 465 GLY A 31 REMARK 465 ILE A 32 REMARK 465 PRO A 33 REMARK 465 THR A 34 REMARK 465 PHE A 35 REMARK 465 ARG A 36 REMARK 465 GLY A 37 REMARK 465 GLU A 38 REMARK 465 ASP A 39 REMARK 465 GLY A 40 REMARK 465 LEU A 41 REMARK 465 TRP A 42 REMARK 465 ARG A 43 REMARK 465 LYS A 44 REMARK 465 TYR A 45 REMARK 465 ASP A 46 REMARK 465 LYS B -3 REMARK 465 GLY B -2 REMARK 465 LEU B -1 REMARK 465 GLY B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 VAL A 50 CG1 CG2 REMARK 470 ARG A 58 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ARG A 113 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 LYS B 1 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 17 86.59 -159.26 REMARK 500 ASN A 59 85.16 -153.75 REMARK 500 TYR A 157 59.70 -102.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 126 SG REMARK 620 2 CYS A 129 SG 115.5 REMARK 620 3 CYS A 150 SG 105.0 104.9 REMARK 620 4 CYS A 153 SG 106.7 114.0 110.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TWI RELATED DB: PDB DBREF 4TWJ A 1 253 UNP O30124 NPD2_ARCFU 1 253 DBREF 4TWJ B -3 9 UNP P02309 H4_YEAST 9 21 SEQADV 4TWJ TRP B 10 UNP P02309 INSERTION SEQRES 1 A 253 MET GLU ASP GLU ILE ARG LYS ALA ALA GLU ILE LEU ALA SEQRES 2 A 253 LYS SER LYS HIS ALA VAL VAL PHE THR GLY ALA GLY ILE SEQRES 3 A 253 SER ALA GLU SER GLY ILE PRO THR PHE ARG GLY GLU ASP SEQRES 4 A 253 GLY LEU TRP ARG LYS TYR ASP PRO GLU GLU VAL ALA SER SEQRES 5 A 253 ILE SER GLY PHE LYS ARG ASN PRO ARG ALA PHE TRP GLU SEQRES 6 A 253 PHE SER MET GLU MET LYS ASP LYS LEU PHE ALA GLU PRO SEQRES 7 A 253 ASN PRO ALA HIS TYR ALA ILE ALA GLU LEU GLU ARG MET SEQRES 8 A 253 GLY ILE VAL LYS ALA VAL ILE THR GLN ASN ILE ASP MET SEQRES 9 A 253 LEU HIS GLN ARG ALA GLY SER ARG ARG VAL LEU GLU LEU SEQRES 10 A 253 HIS GLY SER MET ASP LYS LEU ASP CYS LEU ASP CYS HIS SEQRES 11 A 253 GLU THR TYR ASP TRP SER GLU PHE VAL GLU ASP PHE ASN SEQRES 12 A 253 LYS GLY GLU ILE PRO ARG CYS ARG LYS CYS GLY SER TYR SEQRES 13 A 253 TYR VAL LYS PRO ARG VAL VAL LEU PHE GLY GLU PRO LEU SEQRES 14 A 253 PRO GLN ARG THR LEU PHE GLU ALA ILE GLU GLU ALA LYS SEQRES 15 A 253 HIS CYS ASP ALA PHE MET VAL VAL GLY SER SER LEU VAL SEQRES 16 A 253 VAL TYR PRO ALA ALA GLU LEU PRO TYR ILE ALA LYS LYS SEQRES 17 A 253 ALA GLY ALA LYS MET ILE ILE VAL ASN ALA GLU PRO THR SEQRES 18 A 253 MET ALA ASP PRO ILE PHE ASP VAL LYS ILE ILE GLY LYS SEQRES 19 A 253 ALA GLY GLU VAL LEU PRO LYS ILE VAL GLU GLU VAL LYS SEQRES 20 A 253 ARG LEU ARG SER GLU LYS SEQRES 1 B 14 LYS GLY LEU GLY LYS GLY GLY ALA MYK ARG HIS ARG LYS SEQRES 2 B 14 TRP MODRES 4TWJ MYK B 5 LYS MODIFIED RESIDUE HET MYK B 5 24 HET ZN A 301 1 HET ACT A 302 4 HET ACT A 303 4 HET ACT A 304 4 HET ACT A 305 4 HET ACT A 306 4 HET GOL A 307 6 HET GOL B 101 6 HETNAM MYK N~6~-TETRADECANOYL-L-LYSINE HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN MYK N6-MYRISTOYL LYSINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MYK C20 H40 N2 O3 FORMUL 3 ZN ZN 2+ FORMUL 4 ACT 5(C2 H3 O2 1-) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 11 HOH *200(H2 O) HELIX 1 AA1 MET A 1 SER A 15 1 15 HELIX 2 AA2 ALA A 24 SER A 27 5 4 HELIX 3 AA3 GLU A 48 SER A 52 1 5 HELIX 4 AA4 SER A 52 ASN A 59 1 8 HELIX 5 AA5 ASN A 59 LEU A 74 1 16 HELIX 6 AA6 ASN A 79 MET A 91 1 13 HELIX 7 AA7 MET A 104 ALA A 109 1 6 HELIX 8 AA8 PHE A 138 LYS A 144 1 7 HELIX 9 AA9 PRO A 170 HIS A 183 1 14 HELIX 10 AB1 ALA A 200 ALA A 209 1 10 HELIX 11 AB2 ALA A 223 PHE A 227 5 5 HELIX 12 AB3 LYS A 234 ARG A 250 1 17 SHEET 1 AA1 6 VAL A 114 GLU A 116 0 SHEET 2 AA1 6 VAL A 94 THR A 99 1 N VAL A 97 O LEU A 115 SHEET 3 AA1 6 ALA A 18 THR A 22 1 N VAL A 20 O ILE A 98 SHEET 4 AA1 6 ALA A 186 VAL A 190 1 O VAL A 190 N PHE A 21 SHEET 5 AA1 6 LYS A 212 ASN A 217 1 O ILE A 214 N VAL A 189 SHEET 6 AA1 6 VAL A 229 ILE A 232 1 O ILE A 231 N ILE A 215 SHEET 1 AA2 3 THR A 132 ASP A 134 0 SHEET 2 AA2 3 GLY A 119 CYS A 126 -1 N LEU A 124 O TYR A 133 SHEET 3 AA2 3 VAL A 158 VAL A 162 -1 O LYS A 159 N ASP A 125 SHEET 1 AA3 2 VAL A 196 TYR A 197 0 SHEET 2 AA3 2 ARG B 6 HIS B 7 -1 O ARG B 6 N TYR A 197 LINK C ALA B 4 N MYK B 5 1555 1555 1.33 LINK C MYK B 5 N ARG B 6 1555 1555 1.33 LINK SG CYS A 126 ZN ZN A 301 1555 1555 2.33 LINK SG CYS A 129 ZN ZN A 301 1555 1555 2.32 LINK SG CYS A 150 ZN ZN A 301 1555 1555 2.33 LINK SG CYS A 153 ZN ZN A 301 1555 1555 2.34 CISPEP 1 TYR A 197 PRO A 198 0 -1.90 SITE 1 AC1 4 CYS A 126 CYS A 129 CYS A 150 CYS A 153 SITE 1 AC2 3 ASN A 59 PRO A 60 ARG A 61 SITE 1 AC3 4 ASN A 101 ILE A 102 ASP A 103 HOH A 533 SITE 1 AC4 4 ALA A 24 SER A 193 HOH A 487 HOH A 579 SITE 1 AC5 5 GLY A 25 PHE A 75 LYS A 234 ALA A 235 SITE 2 AC5 5 GLY A 236 SITE 1 AC6 3 LYS A 95 GLU A 176 GLU A 180 SITE 1 AC7 5 GLU A 137 PHE A 138 ARG A 149 ARG A 151 SITE 2 AC7 5 HOH A 451 SITE 1 AC8 6 TYR A 197 HOH A 402 ARG B 6 ARG B 8 SITE 2 AC8 6 HOH B 201 HOH B 203 CRYST1 38.478 77.251 45.904 90.00 110.74 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025989 0.000000 0.009842 0.00000 SCALE2 0.000000 0.012945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023294 0.00000