HEADER TRANSFERASE/TRANSFERASE INHIBITOR 01-JUL-14 4TWP TITLE THE CRYSTAL STRUCTURE OF HUMAN ABL1 T315I GATEKEEPER MUTANT KINASE TITLE 2 DOMAIN IN COMPLEX WITH AXITINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ABL1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 252-522; COMPND 5 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 1,ABELSON COMPND 6 TYROSINE-PROTEIN KINASE 1,PROTO-ONCOGENE C-ABL,P150; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABL1, ABL, JTK7; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS GATEKEEPER MUTANT KINASE DOMAIN DFGIN, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.JOHNSON,M.MCTIGUE,C.N.CRONIN REVDAT 7 07-AUG-24 4TWP 1 REMARK REVDAT 6 27-DEC-23 4TWP 1 LINK REVDAT 5 22-NOV-17 4TWP 1 SOURCE REMARK REVDAT 4 13-MAY-15 4TWP 1 DBREF REVDAT 3 18-MAR-15 4TWP 1 JRNL REVDAT 2 04-MAR-15 4TWP 1 JRNL REVDAT 1 11-FEB-15 4TWP 0 JRNL AUTH T.PEMOVSKA,E.JOHNSON,M.KONTRO,G.A.REPASKY,J.CHEN,P.WELLS, JRNL AUTH 2 C.N.CRONIN,M.MCTIGUE,O.KALLIONIEMI,K.PORKKA,B.W.MURRAY, JRNL AUTH 3 K.WENNERBERG JRNL TITL AXITINIB EFFECTIVELY INHIBITS BCR-ABL1(T315I) WITH A JRNL TITL 2 DISTINCT BINDING CONFORMATION. JRNL REF NATURE V. 519 102 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 25686603 JRNL DOI 10.1038/NATURE14119 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 33967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1681 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.1488 - 5.4927 0.99 2869 153 0.2067 0.2257 REMARK 3 2 5.4927 - 4.3604 1.00 2738 140 0.1775 0.1982 REMARK 3 3 4.3604 - 3.8094 0.99 2700 132 0.1860 0.2054 REMARK 3 4 3.8094 - 3.4612 0.99 2688 145 0.2089 0.2454 REMARK 3 5 3.4612 - 3.2131 1.00 2671 138 0.2156 0.2326 REMARK 3 6 3.2131 - 3.0237 1.00 2682 144 0.2275 0.2778 REMARK 3 7 3.0237 - 2.8723 1.00 2648 149 0.2290 0.2515 REMARK 3 8 2.8723 - 2.7473 1.00 2665 143 0.2437 0.3044 REMARK 3 9 2.7473 - 2.6415 1.00 2650 144 0.2612 0.3152 REMARK 3 10 2.6415 - 2.5504 1.00 2663 130 0.2661 0.3020 REMARK 3 11 2.5504 - 2.4706 1.00 2632 129 0.2792 0.3055 REMARK 3 12 2.4706 - 2.4000 1.00 2680 134 0.2770 0.3586 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 43.95 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.690 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.85560 REMARK 3 B22 (A**2) : 5.45750 REMARK 3 B33 (A**2) : 2.39810 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4538 REMARK 3 ANGLE : 1.126 6141 REMARK 3 CHIRALITY : 0.079 646 REMARK 3 PLANARITY : 0.005 774 REMARK 3 DIHEDRAL : 16.554 1679 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34049 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 85.957 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.62400 REMARK 200 R SYM FOR SHELL (I) : 0.62400 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.00) 15.0 %W/V PEG REMARK 280 3350 0.01 M MAGNESIUM CHLORIDE HEXAHYDRATE 0.0050 M NICKEL(II) REMARK 280 CHLORIDE HEXAHYDRATE 5.0 %V/V GLYCEROL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 286.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.90050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.58200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.90050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.58200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 274 REMARK 465 GLU A 275 REMARK 465 ASP A 276 REMARK 465 THR A 277 REMARK 465 MET A 278 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 400 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 709 O HOH A 747 2.02 REMARK 500 O HOH A 819 O HOH A 822 2.04 REMARK 500 OE2 GLU A 236 OG1 THR A 306 2.13 REMARK 500 NH2 ARG A 460 O HOH A 701 2.14 REMARK 500 O THR B 389 O HOH B 701 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 444 OE2 GLU B 459 4855 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 295 142.15 -173.14 REMARK 500 ASN A 336 -157.55 -104.06 REMARK 500 ARG A 362 -5.53 83.70 REMARK 500 ALA A 365 163.65 176.52 REMARK 500 ALA A 380 -169.40 -126.10 REMARK 500 ASP A 381 73.68 57.38 REMARK 500 LYS B 262 -111.24 58.96 REMARK 500 ARG B 362 -18.83 78.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 602 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 352 OE2 REMARK 620 2 HOH A 738 O 75.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 603 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 490 NE2 REMARK 620 2 GLU A 494 OE1 65.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 605 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 707 O REMARK 620 2 HOH A 714 O 86.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 602 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 352 OE1 REMARK 620 2 GLU B 352 OE2 51.6 REMARK 620 3 HOH B 720 O 69.2 120.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 603 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 490 NE2 REMARK 620 2 GLU B 494 OE1 69.8 REMARK 620 3 HOH B 705 O 68.3 53.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AXI A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AXI B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 604 DBREF 4TWP A 233 503 UNP P00519 ABL1_HUMAN 233 503 DBREF 4TWP B 233 503 UNP P00519 ABL1_HUMAN 233 503 SEQADV 4TWP ILE A 315 UNP P00519 THR 315 ENGINEERED MUTATION SEQADV 4TWP ILE B 315 UNP P00519 THR 315 ENGINEERED MUTATION SEQRES 1 A 271 ASP LYS TRP GLU MET GLU ARG THR ASP ILE THR MET LYS SEQRES 2 A 271 HIS LYS LEU GLY GLY GLY GLN TYR GLY GLU VAL TYR GLU SEQRES 3 A 271 GLY VAL TRP LYS LYS TYR SER LEU THR VAL ALA VAL LYS SEQRES 4 A 271 THR LEU LYS GLU ASP THR MET GLU VAL GLU GLU PHE LEU SEQRES 5 A 271 LYS GLU ALA ALA VAL MET LYS GLU ILE LYS HIS PRO ASN SEQRES 6 A 271 LEU VAL GLN LEU LEU GLY VAL CYS THR ARG GLU PRO PRO SEQRES 7 A 271 PHE TYR ILE ILE ILE GLU PHE MET THR TYR GLY ASN LEU SEQRES 8 A 271 LEU ASP TYR LEU ARG GLU CYS ASN ARG GLN GLU VAL ASN SEQRES 9 A 271 ALA VAL VAL LEU LEU TYR MET ALA THR GLN ILE SER SER SEQRES 10 A 271 ALA MET GLU TYR LEU GLU LYS LYS ASN PHE ILE HIS ARG SEQRES 11 A 271 ASP LEU ALA ALA ARG ASN CYS LEU VAL GLY GLU ASN HIS SEQRES 12 A 271 LEU VAL LYS VAL ALA ASP PHE GLY LEU SER ARG LEU MET SEQRES 13 A 271 THR GLY ASP THR TYR THR ALA HIS ALA GLY ALA LYS PHE SEQRES 14 A 271 PRO ILE LYS TRP THR ALA PRO GLU SER LEU ALA TYR ASN SEQRES 15 A 271 LYS PHE SER ILE LYS SER ASP VAL TRP ALA PHE GLY VAL SEQRES 16 A 271 LEU LEU TRP GLU ILE ALA THR TYR GLY MET SER PRO TYR SEQRES 17 A 271 PRO GLY ILE ASP LEU SER GLN VAL TYR GLU LEU LEU GLU SEQRES 18 A 271 LYS ASP TYR ARG MET GLU ARG PRO GLU GLY CYS PRO GLU SEQRES 19 A 271 LYS VAL TYR GLU LEU MET ARG ALA CYS TRP GLN TRP ASN SEQRES 20 A 271 PRO SER ASP ARG PRO SER PHE ALA GLU ILE HIS GLN ALA SEQRES 21 A 271 PHE GLU THR MET PHE GLN GLU SER SER ILE SER SEQRES 1 B 271 ASP LYS TRP GLU MET GLU ARG THR ASP ILE THR MET LYS SEQRES 2 B 271 HIS LYS LEU GLY GLY GLY GLN TYR GLY GLU VAL TYR GLU SEQRES 3 B 271 GLY VAL TRP LYS LYS TYR SER LEU THR VAL ALA VAL LYS SEQRES 4 B 271 THR LEU LYS GLU ASP THR MET GLU VAL GLU GLU PHE LEU SEQRES 5 B 271 LYS GLU ALA ALA VAL MET LYS GLU ILE LYS HIS PRO ASN SEQRES 6 B 271 LEU VAL GLN LEU LEU GLY VAL CYS THR ARG GLU PRO PRO SEQRES 7 B 271 PHE TYR ILE ILE ILE GLU PHE MET THR TYR GLY ASN LEU SEQRES 8 B 271 LEU ASP TYR LEU ARG GLU CYS ASN ARG GLN GLU VAL ASN SEQRES 9 B 271 ALA VAL VAL LEU LEU TYR MET ALA THR GLN ILE SER SER SEQRES 10 B 271 ALA MET GLU TYR LEU GLU LYS LYS ASN PHE ILE HIS ARG SEQRES 11 B 271 ASP LEU ALA ALA ARG ASN CYS LEU VAL GLY GLU ASN HIS SEQRES 12 B 271 LEU VAL LYS VAL ALA ASP PHE GLY LEU SER ARG LEU MET SEQRES 13 B 271 THR GLY ASP THR TYR THR ALA HIS ALA GLY ALA LYS PHE SEQRES 14 B 271 PRO ILE LYS TRP THR ALA PRO GLU SER LEU ALA TYR ASN SEQRES 15 B 271 LYS PHE SER ILE LYS SER ASP VAL TRP ALA PHE GLY VAL SEQRES 16 B 271 LEU LEU TRP GLU ILE ALA THR TYR GLY MET SER PRO TYR SEQRES 17 B 271 PRO GLY ILE ASP LEU SER GLN VAL TYR GLU LEU LEU GLU SEQRES 18 B 271 LYS ASP TYR ARG MET GLU ARG PRO GLU GLY CYS PRO GLU SEQRES 19 B 271 LYS VAL TYR GLU LEU MET ARG ALA CYS TRP GLN TRP ASN SEQRES 20 B 271 PRO SER ASP ARG PRO SER PHE ALA GLU ILE HIS GLN ALA SEQRES 21 B 271 PHE GLU THR MET PHE GLN GLU SER SER ILE SER HET AXI A 601 28 HET NI A 602 1 HET NI A 603 1 HET NA A 604 1 HET NA A 605 1 HET AXI B 601 28 HET NI B 602 1 HET NI B 603 1 HET NA B 604 1 HETNAM AXI AXITINIB HETNAM NI NICKEL (II) ION HETNAM NA SODIUM ION HETSYN AXI N-METHYL-2-(3-((E)-2-PYRIDIN-2-YL-VINYL)-1H-INDAZOL-6- HETSYN 2 AXI YLSULFANYL)-BENZAMIDE FORMUL 3 AXI 2(C22 H18 N4 O S) FORMUL 4 NI 4(NI 2+) FORMUL 6 NA 3(NA 1+) FORMUL 12 HOH *189(H2 O) HELIX 1 AA1 GLU A 238 THR A 240 5 3 HELIX 2 AA2 GLY A 249 GLN A 252 5 4 HELIX 3 AA3 VAL A 280 ILE A 293 1 14 HELIX 4 AA4 ASN A 322 CYS A 330 1 9 HELIX 5 AA5 ASN A 336 ASN A 358 1 23 HELIX 6 AA6 ALA A 365 ARG A 367 5 3 HELIX 7 AA7 GLU A 373 HIS A 375 5 3 HELIX 8 AA8 PRO A 402 THR A 406 5 5 HELIX 9 AA9 ALA A 407 ASN A 414 1 8 HELIX 10 AB1 SER A 417 THR A 434 1 18 HELIX 11 AB2 ASP A 444 SER A 446 5 3 HELIX 12 AB3 GLN A 447 LYS A 454 1 8 HELIX 13 AB4 PRO A 465 TRP A 476 1 12 HELIX 14 AB5 ASN A 479 ARG A 483 5 5 HELIX 15 AB6 SER A 485 SER A 503 1 19 HELIX 16 AB7 GLU B 238 ILE B 242 5 5 HELIX 17 AB8 GLY B 249 GLN B 252 5 4 HELIX 18 AB9 LYS B 262 SER B 265 5 4 HELIX 19 AC1 GLU B 279 ILE B 293 1 15 HELIX 20 AC2 ASN B 322 CYS B 330 1 9 HELIX 21 AC3 ASN B 336 ASN B 358 1 23 HELIX 22 AC4 ALA B 365 ARG B 367 5 3 HELIX 23 AC5 GLU B 373 HIS B 375 5 3 HELIX 24 AC6 ASP B 381 SER B 385 5 5 HELIX 25 AC7 PRO B 402 THR B 406 5 5 HELIX 26 AC8 ALA B 407 ASN B 414 1 8 HELIX 27 AC9 SER B 417 THR B 434 1 18 HELIX 28 AD1 ASP B 444 SER B 446 5 3 HELIX 29 AD2 GLN B 447 LYS B 454 1 8 HELIX 30 AD3 PRO B 465 TRP B 476 1 12 HELIX 31 AD4 ASN B 479 ARG B 483 5 5 HELIX 32 AD5 SER B 485 SER B 503 1 19 SHEET 1 AA1 5 ILE A 242 LYS A 247 0 SHEET 2 AA1 5 VAL A 256 TRP A 261 -1 O VAL A 260 N THR A 243 SHEET 3 AA1 5 LEU A 266 LYS A 271 -1 O LEU A 266 N TRP A 261 SHEET 4 AA1 5 TYR A 312 GLU A 316 -1 O ILE A 315 N ALA A 269 SHEET 5 AA1 5 LEU A 301 CYS A 305 -1 N LEU A 302 O ILE A 314 SHEET 1 AA2 2 PHE A 359 ILE A 360 0 SHEET 2 AA2 2 ARG A 386 LEU A 387 -1 O ARG A 386 N ILE A 360 SHEET 1 AA3 2 CYS A 369 VAL A 371 0 SHEET 2 AA3 2 VAL A 377 VAL A 379 -1 O LYS A 378 N LEU A 370 SHEET 1 AA4 2 TYR A 393 THR A 394 0 SHEET 2 AA4 2 LYS A 415 PHE A 416 -1 O PHE A 416 N TYR A 393 SHEET 1 AA5 5 THR B 243 LYS B 247 0 SHEET 2 AA5 5 VAL B 256 VAL B 260 -1 O VAL B 260 N THR B 243 SHEET 3 AA5 5 THR B 267 LYS B 271 -1 O VAL B 268 N GLY B 259 SHEET 4 AA5 5 TYR B 312 GLU B 316 -1 O ILE B 315 N ALA B 269 SHEET 5 AA5 5 LEU B 301 CYS B 305 -1 N GLY B 303 O ILE B 314 SHEET 1 AA6 2 PHE B 359 ILE B 360 0 SHEET 2 AA6 2 ARG B 386 LEU B 387 -1 O ARG B 386 N ILE B 360 SHEET 1 AA7 2 CYS B 369 VAL B 371 0 SHEET 2 AA7 2 VAL B 377 VAL B 379 -1 O LYS B 378 N LEU B 370 SHEET 1 AA8 2 TYR B 393 THR B 394 0 SHEET 2 AA8 2 LYS B 415 PHE B 416 -1 O PHE B 416 N TYR B 393 LINK OE2 GLU A 352 NI NI A 602 1555 1555 2.42 LINK NE2 HIS A 490 NI NI A 603 1555 1555 2.59 LINK OE1 GLU A 494 NI NI A 603 1555 1555 2.25 LINK NI NI A 602 O HOH A 738 1555 1555 2.51 LINK NA NA A 605 O HOH A 707 1555 1555 3.08 LINK NA NA A 605 O HOH A 714 1555 1555 3.08 LINK OE1 GLU B 352 NI NI B 602 1555 1555 2.41 LINK OE2 GLU B 352 NI NI B 602 1555 1555 2.62 LINK OH TYR B 393 NA NA B 604 1555 1555 3.15 LINK NE2 HIS B 490 NI NI B 603 1555 1555 2.74 LINK OE1 GLU B 494 NI NI B 603 1555 1555 2.47 LINK NI NI B 602 O HOH B 720 1555 1555 2.37 LINK NI NI B 603 O HOH B 705 1555 1555 2.79 CISPEP 1 PRO A 309 PRO A 310 0 -8.63 CISPEP 2 PRO B 309 PRO B 310 0 -4.30 SITE 1 AC1 12 LEU A 248 TYR A 253 ALA A 269 LYS A 271 SITE 2 AC1 12 GLU A 316 PHE A 317 MET A 318 THR A 319 SITE 3 AC1 12 GLY A 321 ASN A 368 LEU A 370 ASP A 381 SITE 1 AC2 6 GLU A 352 HIS A 490 NI A 603 HOH A 709 SITE 2 AC2 6 HOH A 729 HOH A 738 SITE 1 AC3 3 HIS A 490 GLU A 494 NI A 602 SITE 1 AC4 2 ARG A 362 HIS A 396 SITE 1 AC5 3 ARG A 362 HOH A 707 HOH A 714 SITE 1 AC6 11 TYR B 253 ALA B 269 LYS B 271 GLU B 316 SITE 2 AC6 11 PHE B 317 MET B 318 THR B 319 GLY B 321 SITE 3 AC6 11 ASN B 368 LEU B 370 ASP B 381 SITE 1 AC7 4 GLU B 352 HIS B 490 GLU B 494 HOH B 720 SITE 1 AC8 3 HIS B 490 GLU B 494 HOH B 705 SITE 1 AC9 3 GLU A 373 ARG B 386 TYR B 393 CRYST1 56.818 113.801 131.164 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017600 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007624 0.00000