HEADER HYDROLASE 01-JUL-14 4TWS TITLE GADOLINIUM DERIVATIVE OF TETRAGONAL HEN EGG-WHITE LYSOZYME AT 1.45 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 19-147; COMPND 5 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 6 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS LYSOZYME, GADOLINIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.HOLTON,S.CLASSEN,K.A.FRANKEL,J.A.TAINER REVDAT 7 27-SEP-23 4TWS 1 REMARK LINK REVDAT 6 25-DEC-19 4TWS 1 REMARK REVDAT 5 22-NOV-17 4TWS 1 REMARK REVDAT 4 13-SEP-17 4TWS 1 REMARK REVDAT 3 03-AUG-16 4TWS 1 TITLE REMARK REVDAT 2 01-OCT-14 4TWS 1 JRNL REVDAT 1 20-AUG-14 4TWS 0 JRNL AUTH J.M.HOLTON,S.CLASSEN,K.A.FRANKEL,J.A.TAINER JRNL TITL THE R-FACTOR GAP IN MACROMOLECULAR CRYSTALLOGRAPHY: AN JRNL TITL 2 UNTAPPED POTENTIAL FOR INSIGHTS ON ACCURATE STRUCTURES. JRNL REF FEBS J. V. 281 4046 2014 JRNL REFN ISSN 1742-464X JRNL PMID 25040949 JRNL DOI 10.1111/FEBS.12922 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 19783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 975 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6237 - 2.7743 1.00 3099 136 0.1286 0.1431 REMARK 3 2 2.7743 - 2.2021 1.00 2925 161 0.1311 0.1616 REMARK 3 3 2.2021 - 1.9238 1.00 2888 141 0.1284 0.1380 REMARK 3 4 1.9238 - 1.7479 1.00 2868 159 0.1396 0.1577 REMARK 3 5 1.7479 - 1.6226 0.99 2831 147 0.1538 0.1887 REMARK 3 6 1.6226 - 1.5269 0.87 2478 136 0.1694 0.2323 REMARK 3 7 1.5269 - 1.4505 0.61 1719 95 0.2208 0.2310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1293 REMARK 3 ANGLE : 1.424 1876 REMARK 3 CHIRALITY : 0.065 166 REMARK 3 PLANARITY : 0.004 222 REMARK 3 DIHEDRAL : 22.416 528 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202411. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-07; 25-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 90; 90 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS REMARK 200 BEAMLINE : 8.3.1; 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979340; 0.979340 REMARK 200 MONOCHROMATOR : SI(111); SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19784 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 38.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 39.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.30 REMARK 200 R MERGE FOR SHELL (I) : 0.28200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1H87 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TETRAGONAL CRYSTALS WERE GROWN BY THE REMARK 280 VAPOUR-DIFFUSION TECHNIQUE USING THE HANGING-DROP METHOD, WITH REMARK 280 0.7-1.0 M SODIUM CHLORIDE AND 50 MM SODIUM ACETATE BUFFER AT PH REMARK 280 4.5. DERIVATIVE CRYSTALS CONTAINING GADOLINIUM WERE OBTAINED REMARK 280 USING CONCENTRATIONS OF GD-HPDO3A IN THE RANGE 10-100 MM., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.40500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.61000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.61000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.10750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.61000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.70250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.61000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.61000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.10750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.61000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.61000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.70250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 19.40500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 406 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 GD GD A 203 O HOH A 509 1.00 REMARK 500 HG11 VAL A 109 O HOH A 555 1.24 REMARK 500 NH1 ARG A 112 O HOH A 301 1.26 REMARK 500 HD22 ASN A 77 O HOH A 569 1.27 REMARK 500 CL CL A 210 O HOH A 441 1.27 REMARK 500 HH21 ARG A 61 O HOH A 302 1.28 REMARK 500 O7 DO3 A 206 O HOH A 509 1.34 REMARK 500 HH21 ARG A 61 O HOH A 311 1.37 REMARK 500 CZ ARG A 112 O HOH A 301 1.38 REMARK 500 HC11 DO3 A 206 O HOH A 440 1.42 REMARK 500 H122 DO3 A 206 O HOH A 304 1.47 REMARK 500 HD3 ARG A 125 O HOH A 341 1.49 REMARK 500 HG13 VAL A 109 O HOH A 555 1.54 REMARK 500 HH22 ARG A 61 O HOH A 319 1.54 REMARK 500 HD22 ASN A 44 O HOH A 566 1.55 REMARK 500 NH2 ARG A 61 O HOH A 302 1.56 REMARK 500 O HOH A 339 O HOH A 436 1.62 REMARK 500 N1 DO3 A 204 O HOH A 509 1.63 REMARK 500 OD1 ASN A 44 O HOH A 303 1.68 REMARK 500 CG1 VAL A 109 O HOH A 555 1.70 REMARK 500 O HOH A 495 O HOH A 502 1.70 REMARK 500 O3 DO3 A 206 O HOH A 304 1.94 REMARK 500 C1 DO3 A 206 O HOH A 440 1.97 REMARK 500 O HOH A 333 O HOH A 379 1.97 REMARK 500 CD ARG A 125 O HOH A 341 1.97 REMARK 500 O HOH A 338 O HOH A 351 1.99 REMARK 500 N1 DO3 A 206 O HOH A 509 2.02 REMARK 500 NH2 ARG A 125 O HOH A 305 2.03 REMARK 500 O1 DO3 A 206 O HOH A 509 2.03 REMARK 500 O HOH A 309 O HOH A 381 2.04 REMARK 500 C9 DO3 A 206 O HOH A 509 2.05 REMARK 500 ND2 ASN A 77 O HOH A 569 2.06 REMARK 500 O HOH A 315 O HOH A 465 2.07 REMARK 500 O HOH A 420 O HOH A 441 2.08 REMARK 500 C12 DO3 A 206 O HOH A 304 2.08 REMARK 500 O HOH A 357 O HOH A 395 2.08 REMARK 500 OD1 ASN A 44 O HOH A 306 2.08 REMARK 500 C10 DO3 A 206 O HOH A 509 2.09 REMARK 500 C2 DO3 A 206 O HOH A 440 2.09 REMARK 500 O HOH A 422 O HOH A 434 2.11 REMARK 500 O4 DO3 A 206 O HOH A 307 2.13 REMARK 500 O HOH A 522 O HOH A 537 2.14 REMARK 500 NE ARG A 112 O HOH A 301 2.14 REMARK 500 ND2 ASN A 44 O HOH A 308 2.16 REMARK 500 O HOH A 537 O HOH A 540 2.16 REMARK 500 O HOH A 322 O HOH A 452 2.16 REMARK 500 O HOH A 405 O HOH A 420 2.17 REMARK 500 NE ARG A 61 O HOH A 499 2.17 REMARK 500 O HOH A 340 O HOH A 437 2.17 REMARK 500 O HOH A 409 O HOH A 458 2.18 REMARK 500 REMARK 500 THIS ENTRY HAS 51 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HC32 DO3 A 206 O HOH A 317 1556 1.20 REMARK 500 HH12 ARG A 125 O HOH A 302 4454 1.38 REMARK 500 HH22 ARG A 45 O HOH A 303 7556 1.43 REMARK 500 H173 DO3 A 206 O HOH A 391 1556 1.56 REMARK 500 HC31 DO3 A 206 O HOH A 317 1556 1.58 REMARK 500 O HOH A 431 O HOH A 437 4454 1.58 REMARK 500 C3 DO3 A 206 O HOH A 317 1556 1.64 REMARK 500 O HOH A 371 O HOH A 463 3554 1.77 REMARK 500 O HOH A 402 O HOH A 455 7556 1.90 REMARK 500 NH1 ARG A 125 O HOH A 302 4454 2.02 REMARK 500 O HOH A 397 O HOH A 397 7556 2.07 REMARK 500 O HOH A 388 O HOH A 397 7556 2.07 REMARK 500 O HOH A 484 O HOH A 484 7556 2.07 REMARK 500 O HOH A 403 O HOH A 470 4455 2.11 REMARK 500 O HOH A 393 O HOH A 475 6456 2.13 REMARK 500 O HOH A 419 O HOH A 422 1556 2.14 REMARK 500 O HOH A 429 O HOH A 475 4454 2.19 REMARK 500 NH2 ARG A 45 O HOH A 303 7556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 570 DISTANCE = 7.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 220 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 21 O REMARK 620 2 HOH A 346 O 77.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 221 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 60 O REMARK 620 2 CYS A 64 O 89.3 REMARK 620 3 SER A 72 OG 85.6 162.1 REMARK 620 4 ARG A 73 O 95.4 93.8 103.7 REMARK 620 5 HOH A 514 O 97.9 88.0 75.8 166.6 REMARK 620 6 HOH A 521 O 168.6 101.6 83.0 87.5 79.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 223 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 82 O REMARK 620 2 ASP A 87 O 109.0 REMARK 620 3 HOH A 515 O 113.4 73.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD A 201 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DO3 A 202 O5 REMARK 620 2 DO3 A 202 N3 63.8 REMARK 620 3 DO3 A 202 N4 82.6 68.0 REMARK 620 4 DO3 A 202 O7 85.8 124.3 62.4 REMARK 620 5 DO3 A 202 N1 150.5 102.6 68.0 81.3 REMARK 620 6 DO3 A 202 N2 121.8 65.1 102.4 148.0 66.8 REMARK 620 7 DO3 A 202 O1 143.6 144.7 124.2 86.6 62.0 79.6 REMARK 620 8 DO3 A 202 O4 84.9 81.4 149.4 144.1 120.3 61.6 80.8 REMARK 620 9 HOH A 492 O 71.0 129.5 127.8 71.2 127.9 129.8 72.7 73.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD A 203 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DO3 A 204 N2 REMARK 620 2 DO3 A 204 N3 67.6 REMARK 620 3 DO3 A 204 N4 106.3 69.6 REMARK 620 4 DO3 A 204 O1 79.7 147.3 123.7 REMARK 620 5 DO3 A 204 O5 125.8 64.8 79.8 141.7 REMARK 620 6 DO3 A 204 O4 63.4 80.3 149.7 84.0 84.3 REMARK 620 7 DO3 A 204 O7 146.6 127.5 63.2 81.4 85.1 141.0 REMARK 620 8 DO3 A 204 N1 68.4 105.0 68.7 62.0 148.4 124.8 78.5 REMARK 620 9 DO3 A 206 O5 48.7 98.9 154.7 55.6 116.7 32.8 133.4 94.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD A 205 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DO3 A 204 N1 REMARK 620 2 DO3 A 204 N3 90.3 REMARK 620 3 DO3 A 204 O1 64.5 112.6 REMARK 620 4 DO3 A 204 O4 123.2 64.0 79.5 REMARK 620 5 DO3 A 206 O5 140.1 109.2 75.8 48.1 REMARK 620 6 DO3 A 206 O4 97.5 149.9 97.0 130.6 82.9 REMARK 620 7 DO3 A 206 N1 59.4 35.0 107.6 95.9 143.5 130.9 REMARK 620 8 DO3 A 206 N3 152.2 85.1 141.9 78.9 66.4 74.5 105.5 REMARK 620 9 DO3 A 206 N4 118.7 33.7 106.8 34.0 75.5 142.5 68.7 68.9 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 222 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 363 O REMARK 620 2 HOH A 482 O 136.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DO3 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DO3 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GD A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DO3 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 224 DBREF 4TWS A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET GD A 201 1 HET DO3 A 202 56 HET GD A 203 1 HET DO3 A 204 56 HET GD A 205 1 HET DO3 A 206 56 HET CL A 207 1 HET CL A 208 1 HET CL A 209 1 HET CL A 210 1 HET CL A 211 1 HET CL A 212 1 HET CL A 213 1 HET CL A 214 1 HET CL A 215 1 HET CL A 216 1 HET CL A 217 1 HET CL A 218 1 HET CL A 219 1 HET NA A 220 1 HET NA A 221 1 HET NA A 222 1 HET NA A 223 1 HET NA A 224 1 HETNAM GD GADOLINIUM ATOM HETNAM DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10- HETNAM 2 DO3 TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 2 GD 3(GD) FORMUL 3 DO3 3(C17 H32 N4 O7) FORMUL 8 CL 13(CL 1-) FORMUL 21 NA 5(NA 1+) FORMUL 26 HOH *273(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 SER A 100 1 13 HELIX 6 AA6 ASN A 103 ALA A 107 5 5 HELIX 7 AA7 TRP A 108 CYS A 115 1 8 HELIX 8 AA8 VAL A 120 ARG A 125 5 6 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.03 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.04 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.03 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.03 LINK O ARG A 21 NA B NA A 220 1555 1555 2.75 LINK O SER A 60 NA A NA A 221 1555 1555 2.40 LINK O CYS A 64 NA A NA A 221 1555 1555 2.38 LINK OG SER A 72 NA A NA A 221 1555 1555 2.54 LINK O ARG A 73 NA A NA A 221 1555 1555 2.41 LINK O ALA A 82 NA C NA A 223 1555 1555 2.92 LINK O ASP A 87 NA C NA A 223 1555 1555 2.88 LINK GD GD A 201 O5 ADO3 A 202 1555 1555 2.34 LINK GD GD A 201 N3 ADO3 A 202 1555 1555 2.67 LINK GD GD A 201 N4 ADO3 A 202 1555 1555 2.65 LINK GD GD A 201 O7 ADO3 A 202 1555 1555 2.39 LINK GD GD A 201 N1 ADO3 A 202 1555 1555 2.65 LINK GD GD A 201 N2 ADO3 A 202 1555 1555 2.67 LINK GD GD A 201 O1 ADO3 A 202 1555 1555 2.39 LINK GD GD A 201 O4 ADO3 A 202 1555 1555 2.33 LINK GD GD A 201 O HOH A 492 1555 1555 2.50 LINK GD GD A 203 N2 BDO3 A 204 1555 1555 2.65 LINK GD GD A 203 N3 BDO3 A 204 1555 1555 2.65 LINK GD GD A 203 N4 BDO3 A 204 1555 1555 2.65 LINK GD GD A 203 O1 BDO3 A 204 1555 1555 2.39 LINK GD GD A 203 O5 BDO3 A 204 1555 1555 2.34 LINK GD GD A 203 O4 BDO3 A 204 1555 1555 2.31 LINK GD GD A 203 O7 BDO3 A 204 1555 1555 2.40 LINK GD GD A 203 N1 BDO3 A 204 1555 1555 2.63 LINK GD GD A 203 O5 CDO3 A 206 1555 1555 3.49 LINK GD GD A 203 N1 CDO3 A 206 1555 1555 2.39 LINK GD GD A 203 N4 CDO3 A 206 1555 1555 2.43 LINK GD GD A 203 O1 CDO3 A 206 1555 1555 3.01 LINK GD GD A 203 O2 CDO3 A 206 1555 1555 3.50 LINK GD GD A 203 O HOH A 493 1555 1555 2.51 LINK GD GD A 203 O HOH A 494 1555 1555 3.29 LINK N1 BDO3 A 204 GD GD A 205 1555 1555 2.46 LINK N3 BDO3 A 204 GD GD A 205 1555 1555 3.37 LINK O1 BDO3 A 204 GD GD A 205 1555 1555 2.40 LINK O4 BDO3 A 204 GD GD A 205 1555 1555 2.52 LINK GD GD A 205 O5 CDO3 A 206 1555 1555 2.34 LINK GD GD A 205 O4 CDO3 A 206 1555 1555 2.31 LINK GD GD A 205 N1 CDO3 A 206 1555 1555 2.64 LINK GD GD A 205 N3 CDO3 A 206 1555 1555 2.66 LINK GD GD A 205 N4 CDO3 A 206 1555 1555 2.65 LINK GD GD A 205 O7 CDO3 A 206 1555 1555 2.40 LINK GD GD A 205 N2 CDO3 A 206 1555 1555 2.65 LINK GD GD A 205 O1 CDO3 A 206 1555 1555 2.38 LINK GD GD A 205 O HOH A 494 1555 1555 2.51 LINK GD GD A 205 O HOH A 509 1555 1555 2.02 LINK NA B NA A 220 O HOH A 346 1555 4455 2.82 LINK NA A NA A 221 O HOH A 514 1555 1555 2.49 LINK NA A NA A 221 O HOH A 521 1555 1555 2.35 LINK NA A NA A 222 O HOH A 363 1555 7556 2.95 LINK NA A NA A 222 O HOH A 482 1555 1555 2.82 LINK NA C NA A 223 O HOH A 515 1555 1555 2.81 LINK NA C NA A 224 O HOH A 559 1555 1555 3.02 SITE 1 AC1 2 DO3 A 202 HOH A 492 SITE 1 AC2 19 TRP A 62 TRP A 63 LEU A 75 ASP A 101 SITE 2 AC2 19 ASP A 119 GLN A 121 ARG A 125 GD A 201 SITE 3 AC2 19 DO3 A 204 DO3 A 206 CL A 219 HOH A 323 SITE 4 AC2 19 HOH A 343 HOH A 378 HOH A 419 HOH A 492 SITE 5 AC2 19 HOH A 493 HOH A 505 HOH A 511 SITE 1 AC3 5 DO3 A 204 GD A 205 DO3 A 206 HOH A 493 SITE 2 AC3 5 HOH A 509 SITE 1 AC4 16 ARG A 5 GLY A 117 ALA A 122 TRP A 123 SITE 2 AC4 16 DO3 A 202 GD A 203 GD A 205 DO3 A 206 SITE 3 AC4 16 CL A 219 HOH A 318 HOH A 323 HOH A 391 SITE 4 AC4 16 HOH A 492 HOH A 493 HOH A 494 HOH A 509 SITE 1 AC5 5 GD A 203 DO3 A 204 DO3 A 206 HOH A 494 SITE 2 AC5 5 HOH A 509 SITE 1 AC6 24 ARG A 5 ASP A 101 THR A 118 ASP A 119 SITE 2 AC6 24 ALA A 122 DO3 A 202 GD A 203 DO3 A 204 SITE 3 AC6 24 GD A 205 CL A 219 HOH A 304 HOH A 307 SITE 4 AC6 24 HOH A 310 HOH A 317 HOH A 323 HOH A 391 SITE 5 AC6 24 HOH A 425 HOH A 440 HOH A 445 HOH A 492 SITE 6 AC6 24 HOH A 493 HOH A 494 HOH A 509 HOH A 539 SITE 1 AC7 4 TYR A 23 ASN A 113 NA A 220 HOH A 407 SITE 1 AC8 3 SER A 24 GLY A 26 GLN A 121 SITE 1 AC9 7 ASN A 65 GLY A 67 ARG A 68 THR A 69 SITE 2 AC9 7 SER A 72 HOH A 514 HOH A 556 SITE 1 AD1 3 ILE A 88 HOH A 441 HOH A 465 SITE 1 AD2 6 GLY A 49 SER A 50 THR A 51 ASP A 66 SITE 2 AD2 6 ARG A 68 THR A 69 SITE 1 AD3 6 TYR A 53 GLY A 54 ILE A 55 LEU A 56 SITE 2 AD3 6 GLN A 57 SER A 91 SITE 1 AD4 5 GLN A 41 THR A 43 ARG A 45 TYR A 53 SITE 2 AD4 5 ARG A 68 SITE 1 AD5 4 ASN A 65 PRO A 79 NA A 224 HOH A 435 SITE 1 AD6 6 GLY A 22 SER A 24 ASN A 27 ARG A 114 SITE 2 AD6 6 HOH A 433 HOH A 453 SITE 1 AD7 5 GLY A 4 CYS A 6 GLU A 7 HOH A 409 SITE 2 AD7 5 HOH A 523 SITE 1 AD8 4 ALA A 42 ASN A 44 ARG A 68 HOH A 348 SITE 1 AD9 1 HOH A 525 SITE 1 AE1 6 ARG A 5 DO3 A 202 DO3 A 204 DO3 A 206 SITE 2 AE1 6 HOH A 318 HOH A 323 SITE 1 AE2 5 ARG A 21 TYR A 23 ARG A 114 CL A 207 SITE 2 AE2 5 HOH A 346 SITE 1 AE3 6 SER A 60 CYS A 64 SER A 72 ARG A 73 SITE 2 AE3 6 HOH A 514 HOH A 521 SITE 1 AE4 5 VAL A 2 ASN A 65 GLY A 67 HOH A 363 SITE 2 AE4 5 HOH A 482 SITE 1 AE5 7 ALA A 82 SER A 85 ASP A 87 ILE A 88 SITE 2 AE5 7 ALA A 90 SER A 91 HOH A 515 SITE 1 AE6 6 ASN A 74 ASN A 77 ILE A 78 PRO A 79 SITE 2 AE6 6 CL A 214 HOH A 559 CRYST1 77.220 77.220 38.810 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012950 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012950 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025767 0.00000