HEADER TRANSFERASE 08-JUL-14 4TYM TITLE CRYSTAL STRUCTURE OF PURINE NUCLEOSIDE PHOSPHORYLASE FROM TITLE 2 STREPTOCOCCUS AGALACTIAE 2603V/R, NYSGRC TARGET 030935 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE DEOD-TYPE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PNP; COMPND 5 EC: 2.4.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE LMG 15084; SOURCE 3 ORGANISM_TAXID: 1105274; SOURCE 4 GENE: DEOD, SAG0083_03075; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, NEW YORK STRUCTURAL KEYWDS 2 GENOMICS RESEARCH CONSORTIUM, NYSGRC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.BHOSLE,R.TORO,B.HILLERICH,A.GIZZI,S.GARFORTH, AUTHOR 2 A.KAR,M.K.CHAN,J.LAFLUER,H.PATEL,B.MATIKAINEN,S.CHAMALA,S.LIM, AUTHOR 3 A.CELIKGIL,G.VILLEGAS,B.EVANS,J.LOVE,A.FISER,R.SEIDEL,J.B.BONANNO, AUTHOR 4 S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 3 27-DEC-23 4TYM 1 REMARK REVDAT 2 22-NOV-17 4TYM 1 SOURCE JRNL REMARK REVDAT 1 23-JUL-14 4TYM 0 JRNL AUTH V.N.MALASHKEVICH,R.BHOSLE,R.TORO,B.HILLERICH,A.GIZZI, JRNL AUTH 2 S.GARFORTH,A.KAR,M.K.CHAN,J.LAFLUER,H.PATEL,B.MATIKAINEN, JRNL AUTH 3 S.CHAMALA,S.LIM,A.CELIKGIL,G.VILLEGAS,B.EVANS,J.LOVE, JRNL AUTH 4 A.FISER,R.SEIDEL,J.B.BONANNO,S.C.ALMO, JRNL AUTH 5 NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) JRNL TITL CRYSTAL STRUCTURE OF PURINE NUCLEOSIDE PHOSPHORYLASE FROM JRNL TITL 2 STREPTOCOCCUS AGALACTIAE 2603V/R, NYSGRC TARGET 030935. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 27786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 1311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.8979 - 4.9859 1.00 2964 158 0.1681 0.1748 REMARK 3 2 4.9859 - 3.9594 1.00 2959 147 0.1178 0.1513 REMARK 3 3 3.9594 - 3.4595 1.00 2945 154 0.1385 0.1666 REMARK 3 4 3.4595 - 3.1434 1.00 2998 127 0.1531 0.1804 REMARK 3 5 3.1434 - 2.9183 1.00 2949 146 0.1780 0.2039 REMARK 3 6 2.9183 - 2.7463 1.00 2917 161 0.2134 0.2317 REMARK 3 7 2.7463 - 2.6088 1.00 2978 129 0.2232 0.2970 REMARK 3 8 2.6088 - 2.4953 1.00 2975 143 0.2471 0.2692 REMARK 3 9 2.4953 - 2.3990 0.94 2790 146 0.2829 0.3233 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1865 REMARK 3 ANGLE : 1.088 2529 REMARK 3 CHIRALITY : 0.044 288 REMARK 3 PLANARITY : 0.004 327 REMARK 3 DIHEDRAL : 15.643 678 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 24:258) REMARK 3 ORIGIN FOR THE GROUP (A): 48.8158 45.9188 11.8464 REMARK 3 T TENSOR REMARK 3 T11: 0.2450 T22: 0.3180 REMARK 3 T33: 0.3335 T12: 0.0082 REMARK 3 T13: -0.0151 T23: -0.0730 REMARK 3 L TENSOR REMARK 3 L11: 2.8139 L22: 2.4990 REMARK 3 L33: 1.2341 L12: -0.7330 REMARK 3 L13: -0.6959 L23: 0.5119 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: 0.2871 S13: 0.0123 REMARK 3 S21: -0.1763 S22: -0.1397 S23: 0.4254 REMARK 3 S31: -0.0290 S32: -0.3429 S33: 0.1357 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202522. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32265 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 43.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.94800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, RESOLVE, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M TRIS:HCL, REMARK 280 PH 7.0. 2.0 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.04500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.04500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.04500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 26.04500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 26.04500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 26.04500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -332.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 156.55200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 78.27600 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 135.57801 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 78.27600 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 135.57801 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 26.04500 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 156.55200 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 26.04500 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 26.04500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 411 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 417 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 427 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 GLU A 16 REMARK 465 ASN A 17 REMARK 465 LEU A 18 REMARK 465 TYR A 19 REMARK 465 PHE A 20 REMARK 465 GLN A 21 REMARK 465 SER A 22 REMARK 465 MSE A 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 25 -46.79 76.39 REMARK 500 ARG A 123 -14.63 78.49 REMARK 500 ALA A 237 -58.32 71.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 145 ASP A 146 146.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 451 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 460 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 476 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 477 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 478 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH A 480 DISTANCE = 5.84 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-030935 RELATED DB: TARGETTRACK DBREF 4TYM A 24 258 UNP S9I310 S9I310_STRAG 2 236 SEQADV 4TYM MSE A 1 UNP S9I310 EXPRESSION TAG SEQADV 4TYM HIS A 2 UNP S9I310 EXPRESSION TAG SEQADV 4TYM HIS A 3 UNP S9I310 EXPRESSION TAG SEQADV 4TYM HIS A 4 UNP S9I310 EXPRESSION TAG SEQADV 4TYM HIS A 5 UNP S9I310 EXPRESSION TAG SEQADV 4TYM HIS A 6 UNP S9I310 EXPRESSION TAG SEQADV 4TYM HIS A 7 UNP S9I310 EXPRESSION TAG SEQADV 4TYM SER A 8 UNP S9I310 EXPRESSION TAG SEQADV 4TYM SER A 9 UNP S9I310 EXPRESSION TAG SEQADV 4TYM GLY A 10 UNP S9I310 EXPRESSION TAG SEQADV 4TYM VAL A 11 UNP S9I310 EXPRESSION TAG SEQADV 4TYM ASP A 12 UNP S9I310 EXPRESSION TAG SEQADV 4TYM LEU A 13 UNP S9I310 EXPRESSION TAG SEQADV 4TYM GLY A 14 UNP S9I310 EXPRESSION TAG SEQADV 4TYM THR A 15 UNP S9I310 EXPRESSION TAG SEQADV 4TYM GLU A 16 UNP S9I310 EXPRESSION TAG SEQADV 4TYM ASN A 17 UNP S9I310 EXPRESSION TAG SEQADV 4TYM LEU A 18 UNP S9I310 EXPRESSION TAG SEQADV 4TYM TYR A 19 UNP S9I310 EXPRESSION TAG SEQADV 4TYM PHE A 20 UNP S9I310 EXPRESSION TAG SEQADV 4TYM GLN A 21 UNP S9I310 EXPRESSION TAG SEQADV 4TYM SER A 22 UNP S9I310 EXPRESSION TAG SEQADV 4TYM MSE A 23 UNP S9I310 EXPRESSION TAG SEQRES 1 A 258 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 258 GLY THR GLU ASN LEU TYR PHE GLN SER MSE SER ILE HIS SEQRES 3 A 258 ILE GLU ALA LYS GLN GLY GLU ILE ALA ASP LYS ILE LEU SEQRES 4 A 258 LEU PRO GLY ASP PRO LEU ARG ALA LYS PHE ILE ALA GLU SEQRES 5 A 258 ASN PHE LEU GLU ASP ALA VAL CSO PHE ASN THR VAL ARG SEQRES 6 A 258 ASN MSE PHE GLY TYR THR GLY THR TYR LYS GLY HIS ARG SEQRES 7 A 258 VAL SER VAL MSE GLY THR GLY MSE GLY MSE PRO SER ILE SEQRES 8 A 258 SER ILE TYR ALA ARG GLU LEU ILE VAL ASP TYR GLY VAL SEQRES 9 A 258 LYS THR LEU ILE ARG VAL GLY THR ALA GLY ALA ILE ASN SEQRES 10 A 258 PRO ASP ILE HIS VAL ARG GLU LEU VAL LEU ALA GLN ALA SEQRES 11 A 258 ALA ALA THR ASN SER ASN ILE ILE ARG ASN ASP TRP PRO SEQRES 12 A 258 GLU PHE ASP PHE PRO GLN ILE ALA ASP PHE LYS LEU LEU SEQRES 13 A 258 ASP LYS ALA TYR HIS ILE ALA LYS GLU MSE ASP ILE THR SEQRES 14 A 258 THR HIS VAL GLY SER VAL LEU SER SER ASP VAL PHE TYR SEQRES 15 A 258 SER ASN GLN PRO ASP ARG ASN MSE ALA LEU GLY LYS LEU SEQRES 16 A 258 GLY VAL HIS ALA ILE GLU MSE GLU ALA ALA ALA LEU TYR SEQRES 17 A 258 TYR LEU ALA ALA GLN HIS ASN VAL ASN ALA LEU ALA MSE SEQRES 18 A 258 MSE THR ILE SER ASP ASN LEU ASN ASN PRO GLU GLU ASP SEQRES 19 A 258 THR SER ALA GLU GLU ARG GLN THR THR PHE THR ASP MSE SEQRES 20 A 258 MSE LYS VAL GLY LEU GLU THR LEU ILE SER GLU MODRES 4TYM CSO A 60 CYS MODIFIED RESIDUE MODRES 4TYM MSE A 67 MET MODIFIED RESIDUE MODRES 4TYM MSE A 82 MET MODIFIED RESIDUE MODRES 4TYM MSE A 86 MET MODIFIED RESIDUE MODRES 4TYM MSE A 88 MET MODIFIED RESIDUE MODRES 4TYM MSE A 166 MET MODIFIED RESIDUE MODRES 4TYM MSE A 190 MET MODIFIED RESIDUE MODRES 4TYM MSE A 202 MET MODIFIED RESIDUE MODRES 4TYM MSE A 221 MET MODIFIED RESIDUE MODRES 4TYM MSE A 222 MET MODIFIED RESIDUE MODRES 4TYM MSE A 247 MET MODIFIED RESIDUE MODRES 4TYM MSE A 248 MET MODIFIED RESIDUE HET CSO A 60 7 HET MSE A 67 8 HET MSE A 82 8 HET MSE A 86 8 HET MSE A 88 8 HET MSE A 166 8 HET MSE A 190 8 HET MSE A 202 8 HET MSE A 221 8 HET MSE A 222 8 HET MSE A 247 8 HET MSE A 248 8 HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HETNAM CSO S-HYDROXYCYSTEINE HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 CSO C3 H7 N O3 S FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 HOH *91(H2 O) HELIX 1 AA1 ASP A 43 PHE A 54 1 12 HELIX 2 AA2 THR A 63 MSE A 67 5 5 HELIX 3 AA3 GLY A 87 GLY A 103 1 17 HELIX 4 AA4 ASN A 136 TRP A 142 1 7 HELIX 5 AA5 ASP A 152 MSE A 166 1 15 HELIX 6 AA6 GLN A 185 GLY A 193 1 9 HELIX 7 AA7 GLU A 203 ASN A 215 1 13 HELIX 8 AA8 ALA A 237 SER A 257 1 21 SHEET 1 AA1 9 GLU A 56 ASN A 62 0 SHEET 2 AA1 9 GLY A 69 TYR A 74 -1 O GLY A 69 N PHE A 61 SHEET 3 AA1 9 HIS A 77 MSE A 82 -1 O VAL A 81 N TYR A 70 SHEET 4 AA1 9 LYS A 37 LEU A 39 1 N LEU A 39 O SER A 80 SHEET 5 AA1 9 THR A 106 ALA A 115 1 O ILE A 108 N ILE A 38 SHEET 6 AA1 9 VAL A 197 GLU A 201 -1 O ILE A 200 N GLY A 114 SHEET 7 AA1 9 THR A 170 SER A 177 1 N LEU A 176 O GLU A 201 SHEET 8 AA1 9 LEU A 125 THR A 133 1 N ALA A 132 O SER A 177 SHEET 9 AA1 9 GLN A 149 ILE A 150 -1 O GLN A 149 N ALA A 131 SHEET 1 AA2 8 GLU A 56 ASN A 62 0 SHEET 2 AA2 8 GLY A 69 TYR A 74 -1 O GLY A 69 N PHE A 61 SHEET 3 AA2 8 HIS A 77 MSE A 82 -1 O VAL A 81 N TYR A 70 SHEET 4 AA2 8 LYS A 37 LEU A 39 1 N LEU A 39 O SER A 80 SHEET 5 AA2 8 THR A 106 ALA A 115 1 O ILE A 108 N ILE A 38 SHEET 6 AA2 8 ASN A 217 ASN A 227 1 O ASN A 217 N LEU A 107 SHEET 7 AA2 8 LEU A 125 THR A 133 -1 N VAL A 126 O MSE A 222 SHEET 8 AA2 8 GLN A 149 ILE A 150 -1 O GLN A 149 N ALA A 131 LINK C VAL A 59 N CSO A 60 1555 1555 1.32 LINK C CSO A 60 N PHE A 61 1555 1555 1.32 LINK C ASN A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N PHE A 68 1555 1555 1.33 LINK C VAL A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N GLY A 83 1555 1555 1.33 LINK C GLY A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N GLY A 87 1555 1555 1.32 LINK C GLY A 87 N MSE A 88 1555 1555 1.32 LINK C MSE A 88 N PRO A 89 1555 1555 1.35 LINK C GLU A 165 N MSE A 166 1555 1555 1.33 LINK C MSE A 166 N ASP A 167 1555 1555 1.33 LINK C ASN A 189 N MSE A 190 1555 1555 1.33 LINK C MSE A 190 N ALA A 191 1555 1555 1.33 LINK C GLU A 201 N MSE A 202 1555 1555 1.32 LINK C MSE A 202 N GLU A 203 1555 1555 1.32 LINK C ALA A 220 N MSE A 221 1555 1555 1.32 LINK C MSE A 221 N MSE A 222 1555 1555 1.32 LINK C MSE A 222 N THR A 223 1555 1555 1.32 LINK C ASP A 246 N MSE A 247 1555 1555 1.33 LINK C MSE A 247 N MSE A 248 1555 1555 1.33 LINK C MSE A 248 N LYS A 249 1555 1555 1.33 SITE 1 AC1 8 GLY A 42 ARG A 65 ARG A 109 GLY A 111 SITE 2 AC1 8 THR A 112 HOH A 404 HOH A 419 HOH A 453 SITE 1 AC2 4 HIS A 77 ARG A 78 HOH A 452 HOH A 490 SITE 1 AC3 1 ARG A 123 CRYST1 156.552 156.552 52.090 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006388 0.003688 0.000000 0.00000 SCALE2 0.000000 0.007376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019198 0.00000