HEADER RNA BINDING PROTEIN/RNA 09-JUL-14 4TYY TITLE DEAD-BOX HELICASE MSS116 BOUND TO SSRNA AND CDP-BEF COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'); COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ATP-DEPENDENT RNA HELICASE MSS116, MITOCHONDRIAL; COMPND 7 CHAIN: A; COMPND 8 FRAGMENT: UNP RESIDUES 88-596; COMPND 9 EC: 3.6.4.13; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 559292; SOURCE 9 STRAIN: ATCC 204508 / S288C; SOURCE 10 GENE: MSS116, YDR194C, YD9346.05C; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PMAL-C2T KEYWDS DEAD-BOX, RNA HELICASE, HYDROLASE, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.L.MALLAM,D.J.SIDOTE,A.M.LAMBOWITZ REVDAT 4 27-SEP-23 4TYY 1 SOURCE REMARK REVDAT 3 04-MAR-15 4TYY 1 JRNL REVDAT 2 21-JAN-15 4TYY 1 JRNL REVDAT 1 31-DEC-14 4TYY 0 JRNL AUTH A.L.MALLAM,D.J.SIDOTE,A.M.LAMBOWITZ JRNL TITL MOLECULAR INSIGHTS INTO RNA AND DNA HELICASE EVOLUTION FROM JRNL TITL 2 THE DETERMINANTS OF SPECIFICITY FOR A DEAD-BOX RNA HELICASE. JRNL REF ELIFE V. 3 04630 2014 JRNL REFN ESSN 2050-084X JRNL PMID 25497230 JRNL DOI 10.7554/ELIFE.04630 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 16982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0726 - 4.9765 1.00 2892 131 0.1887 0.2006 REMARK 3 2 4.9765 - 3.9506 1.00 2721 150 0.1896 0.2361 REMARK 3 3 3.9506 - 3.4514 1.00 2704 139 0.2291 0.2719 REMARK 3 4 3.4514 - 3.1359 1.00 2722 136 0.2695 0.3289 REMARK 3 5 3.1359 - 2.9112 1.00 2635 148 0.2999 0.3488 REMARK 3 6 2.9112 - 2.7400 0.92 2455 149 0.3352 0.4666 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4139 REMARK 3 ANGLE : 0.629 5659 REMARK 3 CHIRALITY : 0.029 678 REMARK 3 PLANARITY : 0.003 689 REMARK 3 DIHEDRAL : 12.904 1526 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 128.1710 16.1586 -0.9372 REMARK 3 T TENSOR REMARK 3 T11: 0.3436 T22: 0.4626 REMARK 3 T33: 0.6037 T12: 0.0845 REMARK 3 T13: 0.0076 T23: -0.0826 REMARK 3 L TENSOR REMARK 3 L11: 0.7813 L22: 1.1600 REMARK 3 L33: 0.1393 L12: 0.8324 REMARK 3 L13: 0.1126 L23: -0.0942 REMARK 3 S TENSOR REMARK 3 S11: 0.3927 S12: -0.0650 S13: -0.6603 REMARK 3 S21: 0.3159 S22: -0.2116 S23: -0.0758 REMARK 3 S31: 0.0242 S32: 0.2315 S33: 0.0287 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 118.1132 44.7164 23.0361 REMARK 3 T TENSOR REMARK 3 T11: 0.7713 T22: 0.6816 REMARK 3 T33: 0.4267 T12: 0.0088 REMARK 3 T13: 0.1598 T23: -0.2524 REMARK 3 L TENSOR REMARK 3 L11: 0.6069 L22: 0.6233 REMARK 3 L33: 0.3242 L12: -0.2937 REMARK 3 L13: 0.3493 L23: -0.2171 REMARK 3 S TENSOR REMARK 3 S11: 0.0852 S12: -0.6927 S13: 0.0879 REMARK 3 S21: 0.5247 S22: 0.1785 S23: 0.1361 REMARK 3 S31: -0.2523 S32: -0.0419 S33: 0.2535 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): 123.0255 40.2016 11.1358 REMARK 3 T TENSOR REMARK 3 T11: 0.5055 T22: 0.4697 REMARK 3 T33: 0.5703 T12: -0.0240 REMARK 3 T13: 0.0120 T23: -0.0654 REMARK 3 L TENSOR REMARK 3 L11: 0.8494 L22: 0.3237 REMARK 3 L33: 0.1192 L12: -0.3167 REMARK 3 L13: 0.2427 L23: -0.2420 REMARK 3 S TENSOR REMARK 3 S11: 0.0947 S12: -0.0111 S13: 0.8596 REMARK 3 S21: 0.1876 S22: -0.0282 S23: 0.0032 REMARK 3 S31: -0.1949 S32: 0.1171 S33: -0.0010 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 206 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 131.2444 35.0607 7.3894 REMARK 3 T TENSOR REMARK 3 T11: 0.3536 T22: 0.3838 REMARK 3 T33: 0.4423 T12: 0.0007 REMARK 3 T13: -0.0909 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.5394 L22: 0.5069 REMARK 3 L33: 1.0495 L12: 0.7738 REMARK 3 L13: -0.5417 L23: -0.2072 REMARK 3 S TENSOR REMARK 3 S11: 0.0751 S12: 0.0325 S13: 0.3588 REMARK 3 S21: 0.0035 S22: -0.1636 S23: -0.3106 REMARK 3 S31: -0.1032 S32: 0.2106 S33: 0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): 107.7654 12.4889 21.0039 REMARK 3 T TENSOR REMARK 3 T11: 0.4979 T22: 0.6372 REMARK 3 T33: 0.4149 T12: -0.0497 REMARK 3 T13: 0.1717 T23: 0.2337 REMARK 3 L TENSOR REMARK 3 L11: 2.1352 L22: 0.5537 REMARK 3 L33: 0.1464 L12: -0.9967 REMARK 3 L13: 0.3326 L23: -0.2419 REMARK 3 S TENSOR REMARK 3 S11: 0.1159 S12: -0.5146 S13: -0.9892 REMARK 3 S21: 0.2240 S22: -0.0341 S23: 0.5292 REMARK 3 S31: -0.0524 S32: -0.0945 S33: 0.0929 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 371 THROUGH 397 ) REMARK 3 ORIGIN FOR THE GROUP (A): 106.2964 10.4881 6.4926 REMARK 3 T TENSOR REMARK 3 T11: 0.4771 T22: 0.4480 REMARK 3 T33: 0.9813 T12: -0.0135 REMARK 3 T13: -0.0005 T23: 0.1484 REMARK 3 L TENSOR REMARK 3 L11: 0.2873 L22: 0.1892 REMARK 3 L33: 1.5126 L12: -0.1220 REMARK 3 L13: -0.2807 L23: 0.4929 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: -0.1461 S13: -0.3435 REMARK 3 S21: 0.3539 S22: 0.3531 S23: 0.4204 REMARK 3 S31: 0.3101 S32: 0.0210 S33: 0.0739 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 398 THROUGH 493 ) REMARK 3 ORIGIN FOR THE GROUP (A): 111.5237 17.3007 12.0898 REMARK 3 T TENSOR REMARK 3 T11: 0.4590 T22: 0.4697 REMARK 3 T33: 0.5292 T12: -0.0092 REMARK 3 T13: 0.0353 T23: 0.0632 REMARK 3 L TENSOR REMARK 3 L11: 0.6252 L22: 0.7046 REMARK 3 L33: 0.0426 L12: 0.6272 REMARK 3 L13: 0.0691 L23: -0.0630 REMARK 3 S TENSOR REMARK 3 S11: 0.1649 S12: 0.0191 S13: -0.0900 REMARK 3 S21: -0.0128 S22: -0.0063 S23: 0.4442 REMARK 3 S31: -0.1053 S32: -0.1076 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 494 THROUGH 522 ) REMARK 3 ORIGIN FOR THE GROUP (A): 106.2316 1.6494 15.3661 REMARK 3 T TENSOR REMARK 3 T11: 0.6770 T22: 0.7781 REMARK 3 T33: 0.6564 T12: -0.0956 REMARK 3 T13: -0.0748 T23: 0.1729 REMARK 3 L TENSOR REMARK 3 L11: 2.1160 L22: 2.7986 REMARK 3 L33: 0.2687 L12: -1.3932 REMARK 3 L13: 0.0684 L23: 0.6244 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: -0.2060 S13: -1.0495 REMARK 3 S21: 0.3284 S22: 0.0046 S23: 1.0184 REMARK 3 S31: 0.0300 S32: 0.4779 S33: -0.2735 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 523 THROUGH 563 ) REMARK 3 ORIGIN FOR THE GROUP (A): 120.8661 -1.4367 10.9755 REMARK 3 T TENSOR REMARK 3 T11: 0.5161 T22: 0.5906 REMARK 3 T33: 1.1200 T12: -0.0126 REMARK 3 T13: -0.0493 T23: 0.0983 REMARK 3 L TENSOR REMARK 3 L11: 0.2262 L22: 0.3466 REMARK 3 L33: 0.0740 L12: -0.3045 REMARK 3 L13: 0.1473 L23: -0.1314 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: -0.0391 S13: -0.3286 REMARK 3 S21: -0.1124 S22: 0.1528 S23: 0.0287 REMARK 3 S31: 0.1915 S32: 0.1750 S33: -0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 564 THROUGH 595 ) REMARK 3 ORIGIN FOR THE GROUP (A): 124.5099 -10.9633 5.3687 REMARK 3 T TENSOR REMARK 3 T11: 0.5469 T22: 0.7080 REMARK 3 T33: 1.4085 T12: 0.1173 REMARK 3 T13: -0.0548 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.2968 L22: 0.1449 REMARK 3 L33: 0.8869 L12: -0.1132 REMARK 3 L13: -0.0073 L23: 0.2914 REMARK 3 S TENSOR REMARK 3 S11: 0.5245 S12: 0.0507 S13: -0.5870 REMARK 3 S21: 0.3100 S22: 0.5131 S23: 0.7317 REMARK 3 S31: 0.5239 S32: 0.0801 S33: 0.0354 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TYY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202548. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16982 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.740 REMARK 200 RESOLUTION RANGE LOW (A) : 47.066 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : 0.41000 REMARK 200 FOR SHELL : 2.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3I5X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM MALONATE, PH 5.0, 20 % REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.81750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.42100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.81750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.42100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 96 REMARK 465 ASP A 97 REMARK 465 ASN A 98 REMARK 465 ASP A 596 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 HIS A 92 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 93 CG1 CG2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 SER A 99 OG REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 LEU A 108 CG CD1 CD2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 THR A 122 OG1 CG2 REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 LYS A 138 CE NZ REMARK 470 SER A 143 OG REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 ASP A 145 CG OD1 OD2 REMARK 470 ILE A 149 CG1 CG2 CD1 REMARK 470 SER A 177 OG REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 LYS A 294 CD CE NZ REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 LYS A 311 CD CE NZ REMARK 470 LYS A 323 CE NZ REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 ASN A 334 CG OD1 ND2 REMARK 470 ARG A 341 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 LYS A 365 CE NZ REMARK 470 LYS A 368 CE NZ REMARK 470 ASN A 373 CG OD1 ND2 REMARK 470 LYS A 409 CE NZ REMARK 470 LYS A 414 CE NZ REMARK 470 LYS A 424 CE NZ REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 GLU A 473 CD OE1 OE2 REMARK 470 LYS A 482 CG CD CE NZ REMARK 470 ARG A 489 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 492 CG CD OE1 OE2 REMARK 470 LYS A 495 CG CD CE NZ REMARK 470 LYS A 501 CD CE NZ REMARK 470 LYS A 504 CD CE NZ REMARK 470 GLU A 510 CG CD OE1 OE2 REMARK 470 LEU A 516 CG CD1 CD2 REMARK 470 GLU A 517 CG CD OE1 OE2 REMARK 470 GLU A 524 CD OE1 OE2 REMARK 470 LYS A 542 CE NZ REMARK 470 ARG A 545 NE CZ NH1 NH2 REMARK 470 GLN A 567 CG CD OE1 NE2 REMARK 470 ARG A 574 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 575 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 577 CG CD1 CD2 REMARK 470 ASP A 578 CG OD1 OD2 REMARK 470 LYS A 579 CG CD CE NZ REMARK 470 LEU A 580 CG CD1 CD2 REMARK 470 LEU A 582 CG CD1 CD2 REMARK 470 ARG A 584 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 589 CG CD CE NZ REMARK 470 ARG A 595 NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 278 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 173 34.51 -147.64 REMARK 500 ASN A 207 100.44 -170.66 REMARK 500 PHE A 258 45.73 -100.05 REMARK 500 GLU A 350 -74.21 -64.69 REMARK 500 SER A 372 -138.16 51.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CDP A 602 O1B REMARK 620 2 HOH A 724 O 177.2 REMARK 620 3 HOH A 725 O 81.4 96.2 REMARK 620 4 HOH A 726 O 102.9 75.6 92.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CDP A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TYN RELATED DB: PDB REMARK 900 RELATED ID: 4TYW RELATED DB: PDB REMARK 900 RELATED ID: 4TZ0 RELATED DB: PDB REMARK 900 RELATED ID: 4TZ6 RELATED DB: PDB DBREF 4TYY B 0 8 PDB 4TYY 4TYY 0 8 DBREF 4TYY A 88 596 UNP P15424 MS116_YEAST 88 596 SEQRES 1 B 9 A A A A A A A A A SEQRES 1 A 509 SER LYS LEU ILE HIS VAL PRO LYS GLU ASP ASN SER LYS SEQRES 2 A 509 GLU VAL THR LEU ASP SER LEU LEU GLU GLU GLY VAL LEU SEQRES 3 A 509 ASP LYS GLU ILE HIS LYS ALA ILE THR ARG MET GLU PHE SEQRES 4 A 509 PRO GLY LEU THR PRO VAL GLN GLN LYS THR ILE LYS PRO SEQRES 5 A 509 ILE LEU SER SER GLU ASP HIS ASP VAL ILE ALA ARG ALA SEQRES 6 A 509 LYS THR GLY THR GLY LYS THR PHE ALA PHE LEU ILE PRO SEQRES 7 A 509 ILE PHE GLN HIS LEU ILE ASN THR LYS PHE ASP SER GLN SEQRES 8 A 509 TYR MET VAL LYS ALA VAL ILE VAL ALA PRO THR ARG ASP SEQRES 9 A 509 LEU ALA LEU GLN ILE GLU ALA GLU VAL LYS LYS ILE HIS SEQRES 10 A 509 ASP MET ASN TYR GLY LEU LYS LYS TYR ALA CYS VAL SER SEQRES 11 A 509 LEU VAL GLY GLY THR ASP PHE ARG ALA ALA MET ASN LYS SEQRES 12 A 509 MET ASN LYS LEU ARG PRO ASN ILE VAL ILE ALA THR PRO SEQRES 13 A 509 GLY ARG LEU ILE ASP VAL LEU GLU LYS TYR SER ASN LYS SEQRES 14 A 509 PHE PHE ARG PHE VAL ASP TYR LYS VAL LEU ASP GLU ALA SEQRES 15 A 509 ASP ARG LEU LEU GLU ILE GLY PHE ARG ASP ASP LEU GLU SEQRES 16 A 509 THR ILE SER GLY ILE LEU ASN GLU LYS ASN SER LYS SER SEQRES 17 A 509 ALA ASP ASN ILE LYS THR LEU LEU PHE SER ALA THR LEU SEQRES 18 A 509 ASP ASP LYS VAL GLN LYS LEU ALA ASN ASN ILE MET ASN SEQRES 19 A 509 LYS LYS GLU CYS LEU PHE LEU ASP THR VAL ASP LYS ASN SEQRES 20 A 509 GLU PRO GLU ALA HIS GLU ARG ILE ASP GLN SER VAL VAL SEQRES 21 A 509 ILE SER GLU LYS PHE ALA ASN SER ILE PHE ALA ALA VAL SEQRES 22 A 509 GLU HIS ILE LYS LYS GLN ILE LYS GLU ARG ASP SER ASN SEQRES 23 A 509 TYR LYS ALA ILE ILE PHE ALA PRO THR VAL LYS PHE THR SEQRES 24 A 509 SER PHE LEU CYS SER ILE LEU LYS ASN GLU PHE LYS LYS SEQRES 25 A 509 ASP LEU PRO ILE LEU GLU PHE HIS GLY LYS ILE THR GLN SEQRES 26 A 509 ASN LYS ARG THR SER LEU VAL LYS ARG PHE LYS LYS ASP SEQRES 27 A 509 GLU SER GLY ILE LEU VAL CYS THR ASP VAL GLY ALA ARG SEQRES 28 A 509 GLY MET ASP PHE PRO ASN VAL HIS GLU VAL LEU GLN ILE SEQRES 29 A 509 GLY VAL PRO SER GLU LEU ALA ASN TYR ILE HIS ARG ILE SEQRES 30 A 509 GLY ARG THR ALA ARG SER GLY LYS GLU GLY SER SER VAL SEQRES 31 A 509 LEU PHE ILE CYS LYS ASP GLU LEU PRO PHE VAL ARG GLU SEQRES 32 A 509 LEU GLU ASP ALA LYS ASN ILE VAL ILE ALA LYS GLN GLU SEQRES 33 A 509 LYS TYR GLU PRO SER GLU GLU ILE LYS SER GLU VAL LEU SEQRES 34 A 509 GLU ALA VAL THR GLU GLU PRO GLU ASP ILE SER ASP ILE SEQRES 35 A 509 VAL ILE SER LEU ILE SER SER TYR ARG SER CYS ILE LYS SEQRES 36 A 509 GLU TYR ARG PHE SER GLU ARG ARG ILE LEU PRO GLU ILE SEQRES 37 A 509 ALA SER THR TYR GLY VAL LEU LEU ASN ASP PRO GLN LEU SEQRES 38 A 509 LYS ILE PRO VAL SER ARG ARG PHE LEU ASP LYS LEU GLY SEQRES 39 A 509 LEU SER ARG SER PRO ILE GLY LYS ALA MET PHE GLU ILE SEQRES 40 A 509 ARG ASP HET BEF A 601 4 HET CDP A 602 37 HET MG A 603 1 HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM CDP CYTIDINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 BEF BE F3 1- FORMUL 4 CDP C9 H15 N3 O11 P2 FORMUL 5 MG MG 2+ FORMUL 6 HOH *28(H2 O) HELIX 1 AA1 THR A 103 GLU A 110 1 8 HELIX 2 AA2 ASP A 114 MET A 124 1 11 HELIX 3 AA3 THR A 130 LEU A 141 1 12 HELIX 4 AA4 GLY A 157 ASN A 172 1 16 HELIX 5 AA5 THR A 189 MET A 206 1 18 HELIX 6 AA6 ASN A 207 LYS A 211 5 5 HELIX 7 AA7 ASP A 223 ARG A 235 1 13 HELIX 8 AA8 THR A 242 PHE A 258 1 17 HELIX 9 AA9 GLU A 268 LEU A 273 1 6 HELIX 10 AB1 PHE A 277 ASN A 292 1 16 HELIX 11 AB2 ASP A 310 ASN A 317 1 8 HELIX 12 AB3 ALA A 353 ASP A 371 1 19 HELIX 13 AB4 THR A 382 LYS A 398 1 17 HELIX 14 AB5 THR A 411 ASP A 425 1 15 HELIX 15 AB6 ASP A 434 ALA A 437 5 4 HELIX 16 AB7 ALA A 458 ILE A 464 1 7 HELIX 17 AB8 GLY A 465 THR A 467 5 3 HELIX 18 AB9 GLU A 484 ALA A 494 1 11 HELIX 19 AC1 SER A 508 ALA A 518 1 11 HELIX 20 AC2 GLU A 522 SER A 539 1 18 HELIX 21 AC3 CYS A 540 ARG A 545 1 6 HELIX 22 AC4 SER A 547 SER A 557 1 11 HELIX 23 AC5 SER A 557 LEU A 563 1 7 HELIX 24 AC6 SER A 573 GLY A 581 1 9 HELIX 25 AC7 LEU A 582 ALA A 590 5 9 SHEET 1 AA1 8 LYS A 89 VAL A 93 0 SHEET 2 AA1 8 GLU A 324 LEU A 328 1 O PHE A 327 N ILE A 91 SHEET 3 AA1 8 HIS A 146 ARG A 151 1 N ILE A 149 O LEU A 326 SHEET 4 AA1 8 LYS A 300 SER A 305 1 O LEU A 303 N VAL A 148 SHEET 5 AA1 8 TYR A 263 ASP A 267 1 N LEU A 266 O LEU A 302 SHEET 6 AA1 8 ALA A 183 VAL A 186 1 N VAL A 184 O VAL A 265 SHEET 7 AA1 8 ILE A 238 ALA A 241 1 O VAL A 239 N ILE A 185 SHEET 8 AA1 8 CYS A 215 LEU A 218 1 N LEU A 218 O ILE A 240 SHEET 1 AA2 7 ILE A 403 PHE A 406 0 SHEET 2 AA2 7 GLY A 428 CYS A 432 1 O ILE A 429 N LEU A 404 SHEET 3 AA2 7 LYS A 375 PHE A 379 1 N ILE A 378 O LEU A 430 SHEET 4 AA2 7 GLU A 447 ILE A 451 1 O LEU A 449 N ILE A 377 SHEET 5 AA2 7 GLY A 474 CYS A 481 1 O PHE A 479 N GLN A 450 SHEET 6 AA2 7 ILE A 342 SER A 349 1 N SER A 345 O SER A 476 SHEET 7 AA2 7 LYS A 501 TYR A 505 1 O LYS A 501 N VAL A 346 SHEET 1 AA3 2 ILE A 570 VAL A 572 0 SHEET 2 AA3 2 PHE A 592 ILE A 594 1 O GLU A 593 N VAL A 572 LINK O1B CDP A 602 MG MG A 603 1555 1555 2.15 LINK MG MG A 603 O HOH A 724 1555 1555 2.12 LINK MG MG A 603 O HOH A 725 1555 1555 2.34 LINK MG MG A 603 O HOH A 726 1555 1555 2.34 SITE 1 AC1 13 THR A 154 GLY A 155 LYS A 158 GLU A 268 SITE 2 AC1 13 GLY A 439 ARG A 466 ARG A 469 CDP A 602 SITE 3 AC1 13 MG A 603 HOH A 724 HOH A 726 HOH A 727 SITE 4 AC1 13 HOH A 728 SITE 1 AC2 16 PHE A 126 GLY A 128 THR A 130 GLN A 133 SITE 2 AC2 16 LYS A 153 GLY A 155 THR A 156 GLY A 157 SITE 3 AC2 16 LYS A 158 THR A 159 ASP A 441 ARG A 469 SITE 4 AC2 16 SER A 470 BEF A 601 MG A 603 HOH A 725 SITE 1 AC3 5 BEF A 601 CDP A 602 HOH A 724 HOH A 725 SITE 2 AC3 5 HOH A 726 CRYST1 89.635 126.842 55.303 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011156 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018082 0.00000