HEADER DNA BINDING PROTEIN/LIGASE 09-JUL-14 4TZ4 TITLE CRYSTAL STRUCTURE OF HUMAN CEREBLON IN COMPLEX WITH DDB1 AND TITLE 2 LENALIDOMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DAMAGE-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DDB P127 SUBUNIT,DNA DAMAGE-BINDING PROTEIN A,DDBA,DAMAGE- COMPND 5 SPECIFIC DNA-BINDING PROTEIN 1,HBV X-ASSOCIATED PROTEIN 1,XAP-1,UV- COMPND 6 DAMAGED DNA-BINDING FACTOR,UV-DAMAGED DNA-BINDING PROTEIN 1,UV-DDB 1, COMPND 7 XPE-BINDING FACTOR,XPE-BF,XERODERMA PIGMENTOSUM GROUP E-COMPLEMENTING COMPND 8 PROTEIN,XPCE; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PROTEIN CEREBLON; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDB1, XAP1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CRBN, AD-006; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS DCAF, DNA BINDING PROTEIN-LIGASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.P.CHAMBERLAIN,B.PAGARIGAN,S.DELKER,B.LEON,M.RILEY REVDAT 3 03-APR-24 4TZ4 1 REMARK REVDAT 2 27-DEC-23 4TZ4 1 SOURCE JRNL REMARK ATOM REVDAT 1 06-AUG-14 4TZ4 0 JRNL AUTH P.P.CHAMBERLAIN,M.WANG,M.RILEY,S.DELKER,G.CARMEL,K.MILLER, JRNL AUTH 2 A.LOPEZ-GIRONA,B.PAGARIGAN,B.LEON,E.RYCHAK,L.CORRAL, JRNL AUTH 3 A.LOPEZ-GIRONA,Y.REN,M.WANG,M.RILEY,S.DELKER,T.ITO,A.HIDEKI, JRNL AUTH 4 T.MORI,H.HANDA,T.HAKOSHIMA,T.O.DANIEL,K.MILLER,B.E.CATHERS, JRNL AUTH 5 G.CARMEL,B.PAGARIGAN,B.LEON,E.RYCHAK,L.CORRAL,Y.REN JRNL TITL STRUCTURAL BASIS FOR RESPONSIVENESS TO THALIDOMIDE-ANALOG JRNL TITL 2 DRUGS DEFINED BY THE CRYSTAL STRUCTURE OF THE HUMAN JRNL TITL 3 CEREBLON:DDB1:LENALIDOMIDE COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 37253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1857 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2223 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11043 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.52000 REMARK 3 B22 (A**2) : 1.67000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.465 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.328 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.571 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 11307 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 15349 ; 1.211 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1410 ; 7.382 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 477 ;39.812 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1876 ;19.871 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 53 ;21.184 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1786 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8412 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 393 A 708 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2955 15.1173 -7.6299 REMARK 3 T TENSOR REMARK 3 T11: 0.1819 T22: 0.3401 REMARK 3 T33: 0.0512 T12: -0.1725 REMARK 3 T13: -0.0223 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 3.5814 L22: 3.2779 REMARK 3 L33: 3.2125 L12: 1.0438 REMARK 3 L13: 0.2093 L23: -0.4001 REMARK 3 S TENSOR REMARK 3 S11: 0.1427 S12: -0.3694 S13: 0.3531 REMARK 3 S21: 0.4140 S22: -0.1791 S23: -0.0495 REMARK 3 S31: -0.4800 S32: 0.5261 S33: 0.0363 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 392 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0904 3.8364 -65.2819 REMARK 3 T TENSOR REMARK 3 T11: 0.1202 T22: 0.1155 REMARK 3 T33: 0.0815 T12: -0.0118 REMARK 3 T13: 0.0069 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 0.6744 L22: 1.5928 REMARK 3 L33: 0.9417 L12: -0.0860 REMARK 3 L13: -0.1285 L23: 0.4001 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: 0.0822 S13: -0.0329 REMARK 3 S21: -0.2170 S22: -0.0140 S23: -0.0857 REMARK 3 S31: 0.0628 S32: 0.0173 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 709 A 1147 REMARK 3 ORIGIN FOR THE GROUP (A): -21.4497 29.8526 -47.2447 REMARK 3 T TENSOR REMARK 3 T11: 0.1081 T22: 0.0676 REMARK 3 T33: 0.1493 T12: -0.0171 REMARK 3 T13: 0.0311 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.1981 L22: 0.6911 REMARK 3 L33: 0.6488 L12: -0.3355 REMARK 3 L13: -0.1631 L23: 0.0081 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: -0.0245 S13: 0.1280 REMARK 3 S21: 0.0616 S22: 0.0397 S23: 0.0221 REMARK 3 S31: -0.0573 S32: -0.0277 S33: -0.0137 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 187 C 256 REMARK 3 ORIGIN FOR THE GROUP (A): -31.4949 19.5893 -66.7327 REMARK 3 T TENSOR REMARK 3 T11: 0.3112 T22: 0.2168 REMARK 3 T33: 0.1573 T12: 0.0353 REMARK 3 T13: -0.0629 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.2447 L22: 4.0544 REMARK 3 L33: 1.5630 L12: -0.8538 REMARK 3 L13: 0.2745 L23: -0.7572 REMARK 3 S TENSOR REMARK 3 S11: 0.1740 S12: 0.0776 S13: -0.0597 REMARK 3 S21: -0.1843 S22: -0.0133 S23: 0.2017 REMARK 3 S31: 0.4191 S32: -0.0262 S33: -0.1607 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 48 C 186 REMARK 3 RESIDUE RANGE : C 257 C 428 REMARK 3 ORIGIN FOR THE GROUP (A): -36.9292 47.0136 -87.0997 REMARK 3 T TENSOR REMARK 3 T11: 0.2144 T22: 0.1139 REMARK 3 T33: 0.1062 T12: 0.0164 REMARK 3 T13: -0.0112 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.2450 L22: 1.2852 REMARK 3 L33: 1.9447 L12: -0.5552 REMARK 3 L13: 0.8709 L23: -0.8788 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: -0.0827 S13: 0.0408 REMARK 3 S21: 0.0163 S22: -0.1457 S23: -0.0825 REMARK 3 S31: -0.0630 S32: -0.0084 S33: 0.1273 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4TZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202527. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37313 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.010 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.18100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.72300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: DDB1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7.5, 18% PEG 10K, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.93100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.33850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.55850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 99.33850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.93100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.55850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 47 REMARK 465 GLY A 48 REMARK 465 SER A 94 REMARK 465 GLY A 95 REMARK 465 GLU A 96 REMARK 465 GLU A 210 REMARK 465 GLU A 288 REMARK 465 GLU A 289 REMARK 465 GLN A 290 REMARK 465 MET A 291 REMARK 465 ASP A 292 REMARK 465 GLY A 293 REMARK 465 THR A 294 REMARK 465 VAL A 295 REMARK 465 VAL A 338 REMARK 465 ASP A 339 REMARK 465 SER A 340 REMARK 465 ASN A 341 REMARK 465 ARG A 369 REMARK 465 GLN A 370 REMARK 465 GLY A 371 REMARK 465 ASN A 418 REMARK 465 ARG A 419 REMARK 465 HIS A 536 REMARK 465 GLU A 537 REMARK 465 GLY A 547 REMARK 465 ASP A 548 REMARK 465 SER A 549 REMARK 465 ASN A 550 REMARK 465 TRP A 561 REMARK 465 LEU A 577 REMARK 465 GLU A 585 REMARK 465 ARG A 626 REMARK 465 LEU A 644 REMARK 465 SER A 662 REMARK 465 THR A 745 REMARK 465 SER A 746 REMARK 465 GLY A 747 REMARK 465 GLY A 748 REMARK 465 SER A 768 REMARK 465 LYS A 769 REMARK 465 LEU A 770 REMARK 465 PHE A 771 REMARK 465 SER A 772 REMARK 465 SER A 773 REMARK 465 SER A 774 REMARK 465 THR A 775 REMARK 465 ALA A 776 REMARK 465 PRO A 777 REMARK 465 HIS A 778 REMARK 465 GLU A 779 REMARK 465 THR A 780 REMARK 465 SER A 781 REMARK 465 PHE A 782 REMARK 465 GLY A 783 REMARK 465 SER A 981 REMARK 465 ALA A 982 REMARK 465 ALA A 983 REMARK 465 THR A 984 REMARK 465 THR A 985 REMARK 465 ASP A 986 REMARK 465 MET A 1014 REMARK 465 GLN A 1015 REMARK 465 ASN A 1016 REMARK 465 LEU A 1017 REMARK 465 GLY A 1018 REMARK 465 GLU A 1019 REMARK 465 THR A 1020 REMARK 465 SER A 1021 REMARK 465 THR A 1022 REMARK 465 PRO A 1023 REMARK 465 GLU A 1079 REMARK 465 ARG A 1080 REMARK 465 SER A 1118 REMARK 465 GLY A 1119 REMARK 465 MET A 1120 REMARK 465 ASN C 127 REMARK 465 VAL C 128 REMARK 465 GLN C 129 REMARK 465 GLU C 130 REMARK 465 ARG C 131 REMARK 465 GLN C 173 REMARK 465 SER C 174 REMARK 465 ASP C 175 REMARK 465 SER C 214 REMARK 465 ARG C 215 REMARK 465 GLU C 216 REMARK 465 ASP C 217 REMARK 465 GLN C 218 REMARK 465 CYS C 219 REMARK 465 GLU C 266 REMARK 465 ASN C 267 REMARK 465 LEU C 268 REMARK 465 LYS C 269 REMARK 465 ASP C 270 REMARK 465 ASP C 271 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 ARG A 111 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 112 CG1 CG2 CD1 REMARK 470 ARG A 114 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 148 CG OD1 OD2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 174 CG CD OE1 NE2 REMARK 470 GLN A 186 CG CD OE1 NE2 REMARK 470 ASN A 211 CG OD1 ND2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ARG A 301 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 319 CG OD1 ND2 REMARK 470 GLU A 368 CG CD OE1 OE2 REMARK 470 GLN A 372 CB CG CD OE1 NE2 REMARK 470 ARG A 391 CG CD NE CZ NH1 NH2 REMARK 470 SER A 415 OG REMARK 470 GLU A 447 CG CD OE1 OE2 REMARK 470 GLN A 494 CG CD OE1 NE2 REMARK 470 GLU A 535 CG CD OE1 OE2 REMARK 470 LEU A 552 CG CD1 CD2 REMARK 470 LYS A 570 CG CD CE NZ REMARK 470 GLU A 575 CG CD OE1 OE2 REMARK 470 LEU A 576 CG CD1 CD2 REMARK 470 HIS A 578 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 589 CG CD NE CZ NH1 NH2 REMARK 470 SER A 590 OG REMARK 470 GLU A 597 CG CD OE1 OE2 REMARK 470 ASN A 617 CG OD1 ND2 REMARK 470 GLU A 619 CG CD OE1 OE2 REMARK 470 THR A 620 OG1 CG2 REMARK 470 LEU A 622 CG CD1 CD2 REMARK 470 LEU A 623 CG CD1 CD2 REMARK 470 LYS A 627 CG CD CE NZ REMARK 470 GLN A 634 CG CD OE1 NE2 REMARK 470 SER A 643 OG REMARK 470 SER A 645 OG REMARK 470 ARG A 655 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 665 CG CD CE NZ REMARK 470 LEU A 666 CG CD1 CD2 REMARK 470 SER A 669 OG REMARK 470 LYS A 674 CG CD CE NZ REMARK 470 LEU A 699 CG CD1 CD2 REMARK 470 THR A 703 OG1 CG2 REMARK 470 GLU A 706 CG CD OE1 OE2 REMARK 470 GLN A 743 CG CD OE1 NE2 REMARK 470 ASP A 744 CG OD1 OD2 REMARK 470 SER A 762 OG REMARK 470 GLU A 784 CG CD OE1 OE2 REMARK 470 GLN A 809 CG CD OE1 NE2 REMARK 470 ASP A 855 CG OD1 OD2 REMARK 470 LYS A 857 CG CD CE NZ REMARK 470 LYS A 867 CG CD CE NZ REMARK 470 GLU A 896 CG CD OE1 OE2 REMARK 470 LYS A1081 CG CD CE NZ REMARK 470 GLN A1113 CG CD OE1 NE2 REMARK 470 LYS A1121 CG CD CE NZ REMARK 470 GLU A1123 CG CD OE1 OE2 REMARK 470 GLU A1147 CG CD OE1 OE2 REMARK 470 LEU C 53 CG CD1 CD2 REMARK 470 ASP C 63 CG OD1 OD2 REMARK 470 GLU C 65 CG CD OE1 OE2 REMARK 470 HIS C 68 CG ND1 CD2 CE1 NE2 REMARK 470 MET C 109 CG SD CE REMARK 470 LYS C 116 CG CD CE NZ REMARK 470 SER C 126 OG REMARK 470 GLU C 132 CG CD OE1 OE2 REMARK 470 GLU C 146 CG CD OE1 OE2 REMARK 470 GLN C 183 CG CD OE1 NE2 REMARK 470 LYS C 226 CG CD CE NZ REMARK 470 LYS C 229 CG CD CE NZ REMARK 470 ARG C 230 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 292 CG OD1 OD2 REMARK 470 LYS C 317 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 565 O GLU A 580 1.66 REMARK 500 O TYR A 660 N VAL A 667 1.92 REMARK 500 OG1 THR A 24 ND2 ASN A 30 2.07 REMARK 500 O LEU A 576 N HIS A 578 2.07 REMARK 500 OG1 THR A 24 OD1 ASN A 30 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP C 240 CE2 TRP C 240 CD2 0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 225 C - N - CA ANGL. DEV. = -10.8 DEGREES REMARK 500 PRO A 358 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 PRO A 358 C - N - CD ANGL. DEV. = -19.5 DEGREES REMARK 500 PRO C 411 C - N - CD ANGL. DEV. = -17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 36 -101.58 66.45 REMARK 500 ASN A 149 58.85 -110.22 REMARK 500 VAL A 212 -179.58 -68.18 REMARK 500 SER A 217 -7.36 -148.28 REMARK 500 PRO A 223 -178.84 -61.66 REMARK 500 GLU A 224 42.74 -91.73 REMARK 500 PRO A 225 -61.60 -97.63 REMARK 500 ASN A 267 -39.48 -37.29 REMARK 500 LEU A 317 -82.42 -96.79 REMARK 500 GLN A 343 0.62 -152.58 REMARK 500 PRO A 358 101.03 20.22 REMARK 500 PHE A 382 -125.60 43.18 REMARK 500 GLN A 481 -62.73 -102.09 REMARK 500 PRO A 483 97.85 18.87 REMARK 500 ASN A 504 -153.50 -122.06 REMARK 500 GLN A 524 -10.21 76.65 REMARK 500 ILE A 529 -47.96 -136.36 REMARK 500 ILE A 543 32.02 -149.65 REMARK 500 PRO A 554 31.64 -78.51 REMARK 500 PRO A 572 -52.93 24.26 REMARK 500 PHE A 574 -3.40 78.30 REMARK 500 GLU A 597 -126.11 62.23 REMARK 500 THR A 646 -166.78 -103.43 REMARK 500 SER A 653 -163.71 178.01 REMARK 500 ASN A 672 67.44 -68.04 REMARK 500 SER A 690 -166.87 -100.63 REMARK 500 ASN A 695 -154.28 -113.14 REMARK 500 PHE A 799 21.81 49.04 REMARK 500 ASN A 810 4.10 56.94 REMARK 500 ASP A 855 -127.58 52.32 REMARK 500 VAL A 870 79.97 -100.62 REMARK 500 ASN A 885 -124.30 56.05 REMARK 500 ALA A 911 78.23 -66.56 REMARK 500 ARG A 928 9.58 92.45 REMARK 500 ALA A 956 142.66 -174.84 REMARK 500 ALA A 971 45.95 72.72 REMARK 500 GLU A 988 36.31 -94.75 REMARK 500 SER A1027 116.23 -166.10 REMARK 500 LEU C 168 -65.62 -99.57 REMARK 500 PRO C 191 -172.13 -65.45 REMARK 500 SER C 195 -8.94 -51.92 REMARK 500 CYS C 318 70.82 -118.24 REMARK 500 GLN C 327 -57.52 66.91 REMARK 500 ASN C 335 -38.41 -39.15 REMARK 500 GLU C 377 109.55 -47.52 REMARK 500 ALA C 395 -4.04 74.14 REMARK 500 PRO C 411 107.22 33.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 224 PRO A 225 145.01 REMARK 500 GLY A 357 PRO A 358 -117.19 REMARK 500 GLU A 482 PRO A 483 -143.20 REMARK 500 LEU A 571 PRO A 572 -137.09 REMARK 500 GLY A 940 ASN A 941 -148.94 REMARK 500 SER C 410 PRO C 411 -123.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 323 SG REMARK 620 2 CYS C 326 SG 102.3 REMARK 620 3 CYS C 391 SG 109.5 109.9 REMARK 620 4 CYS C 394 SG 89.1 124.1 117.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LVY C 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TZC RELATED DB: PDB REMARK 900 RELATED ID: 4TZU RELATED DB: PDB DBREF 4TZ4 A 2 1140 UNP Q16531 DDB1_HUMAN 2 1140 DBREF 4TZ4 C 48 428 UNP Q96SW2 CRBN_HUMAN 47 427 SEQADV 4TZ4 TRP A 1141 UNP Q16531 EXPRESSION TAG SEQADV 4TZ4 SER A 1142 UNP Q16531 EXPRESSION TAG SEQADV 4TZ4 HIS A 1143 UNP Q16531 EXPRESSION TAG SEQADV 4TZ4 PRO A 1144 UNP Q16531 EXPRESSION TAG SEQADV 4TZ4 GLN A 1145 UNP Q16531 EXPRESSION TAG SEQADV 4TZ4 PHE A 1146 UNP Q16531 EXPRESSION TAG SEQADV 4TZ4 GLU A 1147 UNP Q16531 EXPRESSION TAG SEQRES 1 A 1146 SER TYR ASN TYR VAL VAL THR ALA GLN LYS PRO THR ALA SEQRES 2 A 1146 VAL ASN GLY CYS VAL THR GLY HIS PHE THR SER ALA GLU SEQRES 3 A 1146 ASP LEU ASN LEU LEU ILE ALA LYS ASN THR ARG LEU GLU SEQRES 4 A 1146 ILE TYR VAL VAL THR ALA GLU GLY LEU ARG PRO VAL LYS SEQRES 5 A 1146 GLU VAL GLY MET TYR GLY LYS ILE ALA VAL MET GLU LEU SEQRES 6 A 1146 PHE ARG PRO LYS GLY GLU SER LYS ASP LEU LEU PHE ILE SEQRES 7 A 1146 LEU THR ALA LYS TYR ASN ALA CYS ILE LEU GLU TYR LYS SEQRES 8 A 1146 GLN SER GLY GLU SER ILE ASP ILE ILE THR ARG ALA HIS SEQRES 9 A 1146 GLY ASN VAL GLN ASP ARG ILE GLY ARG PRO SER GLU THR SEQRES 10 A 1146 GLY ILE ILE GLY ILE ILE ASP PRO GLU CYS ARG MET ILE SEQRES 11 A 1146 GLY LEU ARG LEU TYR ASP GLY LEU PHE LYS VAL ILE PRO SEQRES 12 A 1146 LEU ASP ARG ASP ASN LYS GLU LEU LYS ALA PHE ASN ILE SEQRES 13 A 1146 ARG LEU GLU GLU LEU HIS VAL ILE ASP VAL LYS PHE LEU SEQRES 14 A 1146 TYR GLY CYS GLN ALA PRO THR ILE CYS PHE VAL TYR GLN SEQRES 15 A 1146 ASP PRO GLN GLY ARG HIS VAL LYS THR TYR GLU VAL SER SEQRES 16 A 1146 LEU ARG GLU LYS GLU PHE ASN LYS GLY PRO TRP LYS GLN SEQRES 17 A 1146 GLU ASN VAL GLU ALA GLU ALA SER MET VAL ILE ALA VAL SEQRES 18 A 1146 PRO GLU PRO PHE GLY GLY ALA ILE ILE ILE GLY GLN GLU SEQRES 19 A 1146 SER ILE THR TYR HIS ASN GLY ASP LYS TYR LEU ALA ILE SEQRES 20 A 1146 ALA PRO PRO ILE ILE LYS GLN SER THR ILE VAL CYS HIS SEQRES 21 A 1146 ASN ARG VAL ASP PRO ASN GLY SER ARG TYR LEU LEU GLY SEQRES 22 A 1146 ASP MET GLU GLY ARG LEU PHE MET LEU LEU LEU GLU LYS SEQRES 23 A 1146 GLU GLU GLN MET ASP GLY THR VAL THR LEU LYS ASP LEU SEQRES 24 A 1146 ARG VAL GLU LEU LEU GLY GLU THR SER ILE ALA GLU CYS SEQRES 25 A 1146 LEU THR TYR LEU ASP ASN GLY VAL VAL PHE VAL GLY SER SEQRES 26 A 1146 ARG LEU GLY ASP SER GLN LEU VAL LYS LEU ASN VAL ASP SEQRES 27 A 1146 SER ASN GLU GLN GLY SER TYR VAL VAL ALA MET GLU THR SEQRES 28 A 1146 PHE THR ASN LEU GLY PRO ILE VAL ASP MET CYS VAL VAL SEQRES 29 A 1146 ASP LEU GLU ARG GLN GLY GLN GLY GLN LEU VAL THR CYS SEQRES 30 A 1146 SER GLY ALA PHE LYS GLU GLY SER LEU ARG ILE ILE ARG SEQRES 31 A 1146 ASN GLY ILE GLY ILE HIS GLU HIS ALA SER ILE ASP LEU SEQRES 32 A 1146 PRO GLY ILE LYS GLY LEU TRP PRO LEU ARG SER ASP PRO SEQRES 33 A 1146 ASN ARG GLU THR ASP ASP THR LEU VAL LEU SER PHE VAL SEQRES 34 A 1146 GLY GLN THR ARG VAL LEU MET LEU ASN GLY GLU GLU VAL SEQRES 35 A 1146 GLU GLU THR GLU LEU MET GLY PHE VAL ASP ASP GLN GLN SEQRES 36 A 1146 THR PHE PHE CYS GLY ASN VAL ALA HIS GLN GLN LEU ILE SEQRES 37 A 1146 GLN ILE THR SER ALA SER VAL ARG LEU VAL SER GLN GLU SEQRES 38 A 1146 PRO LYS ALA LEU VAL SER GLU TRP LYS GLU PRO GLN ALA SEQRES 39 A 1146 LYS ASN ILE SER VAL ALA SER CYS ASN SER SER GLN VAL SEQRES 40 A 1146 VAL VAL ALA VAL GLY ARG ALA LEU TYR TYR LEU GLN ILE SEQRES 41 A 1146 HIS PRO GLN GLU LEU ARG GLN ILE SER HIS THR GLU MET SEQRES 42 A 1146 GLU HIS GLU VAL ALA CYS LEU ASP ILE THR PRO LEU GLY SEQRES 43 A 1146 ASP SER ASN GLY LEU SER PRO LEU CYS ALA ILE GLY LEU SEQRES 44 A 1146 TRP THR ASP ILE SER ALA ARG ILE LEU LYS LEU PRO SER SEQRES 45 A 1146 PHE GLU LEU LEU HIS LYS GLU MET LEU GLY GLY GLU ILE SEQRES 46 A 1146 ILE PRO ARG SER ILE LEU MET THR THR PHE GLU SER SER SEQRES 47 A 1146 HIS TYR LEU LEU CYS ALA LEU GLY ASP GLY ALA LEU PHE SEQRES 48 A 1146 TYR PHE GLY LEU ASN ILE GLU THR GLY LEU LEU SER ASP SEQRES 49 A 1146 ARG LYS LYS VAL THR LEU GLY THR GLN PRO THR VAL LEU SEQRES 50 A 1146 ARG THR PHE ARG SER LEU SER THR THR ASN VAL PHE ALA SEQRES 51 A 1146 CYS SER ASP ARG PRO THR VAL ILE TYR SER SER ASN HIS SEQRES 52 A 1146 LYS LEU VAL PHE SER ASN VAL ASN LEU LYS GLU VAL ASN SEQRES 53 A 1146 TYR MET CYS PRO LEU ASN SER ASP GLY TYR PRO ASP SER SEQRES 54 A 1146 LEU ALA LEU ALA ASN ASN SER THR LEU THR ILE GLY THR SEQRES 55 A 1146 ILE ASP GLU ILE GLN LYS LEU HIS ILE ARG THR VAL PRO SEQRES 56 A 1146 LEU TYR GLU SER PRO ARG LYS ILE CYS TYR GLN GLU VAL SEQRES 57 A 1146 SER GLN CYS PHE GLY VAL LEU SER SER ARG ILE GLU VAL SEQRES 58 A 1146 GLN ASP THR SER GLY GLY THR THR ALA LEU ARG PRO SER SEQRES 59 A 1146 ALA SER THR GLN ALA LEU SER SER SER VAL SER SER SER SEQRES 60 A 1146 LYS LEU PHE SER SER SER THR ALA PRO HIS GLU THR SER SEQRES 61 A 1146 PHE GLY GLU GLU VAL GLU VAL HIS ASN LEU LEU ILE ILE SEQRES 62 A 1146 ASP GLN HIS THR PHE GLU VAL LEU HIS ALA HIS GLN PHE SEQRES 63 A 1146 LEU GLN ASN GLU TYR ALA LEU SER LEU VAL SER CYS LYS SEQRES 64 A 1146 LEU GLY LYS ASP PRO ASN THR TYR PHE ILE VAL GLY THR SEQRES 65 A 1146 ALA MET VAL TYR PRO GLU GLU ALA GLU PRO LYS GLN GLY SEQRES 66 A 1146 ARG ILE VAL VAL PHE GLN TYR SER ASP GLY LYS LEU GLN SEQRES 67 A 1146 THR VAL ALA GLU LYS GLU VAL LYS GLY ALA VAL TYR SER SEQRES 68 A 1146 MET VAL GLU PHE ASN GLY LYS LEU LEU ALA SER ILE ASN SEQRES 69 A 1146 SER THR VAL ARG LEU TYR GLU TRP THR THR GLU LYS GLU SEQRES 70 A 1146 LEU ARG THR GLU CYS ASN HIS TYR ASN ASN ILE MET ALA SEQRES 71 A 1146 LEU TYR LEU LYS THR LYS GLY ASP PHE ILE LEU VAL GLY SEQRES 72 A 1146 ASP LEU MET ARG SER VAL LEU LEU LEU ALA TYR LYS PRO SEQRES 73 A 1146 MET GLU GLY ASN PHE GLU GLU ILE ALA ARG ASP PHE ASN SEQRES 74 A 1146 PRO ASN TRP MET SER ALA VAL GLU ILE LEU ASP ASP ASP SEQRES 75 A 1146 ASN PHE LEU GLY ALA GLU ASN ALA PHE ASN LEU PHE VAL SEQRES 76 A 1146 CYS GLN LYS ASP SER ALA ALA THR THR ASP GLU GLU ARG SEQRES 77 A 1146 GLN HIS LEU GLN GLU VAL GLY LEU PHE HIS LEU GLY GLU SEQRES 78 A 1146 PHE VAL ASN VAL PHE CYS HIS GLY SER LEU VAL MET GLN SEQRES 79 A 1146 ASN LEU GLY GLU THR SER THR PRO THR GLN GLY SER VAL SEQRES 80 A 1146 LEU PHE GLY THR VAL ASN GLY MET ILE GLY LEU VAL THR SEQRES 81 A 1146 SER LEU SER GLU SER TRP TYR ASN LEU LEU LEU ASP MET SEQRES 82 A 1146 GLN ASN ARG LEU ASN LYS VAL ILE LYS SER VAL GLY LYS SEQRES 83 A 1146 ILE GLU HIS SER PHE TRP ARG SER PHE HIS THR GLU ARG SEQRES 84 A 1146 LYS THR GLU PRO ALA THR GLY PHE ILE ASP GLY ASP LEU SEQRES 85 A 1146 ILE GLU SER PHE LEU ASP ILE SER ARG PRO LYS MET GLN SEQRES 86 A 1146 GLU VAL VAL ALA ASN LEU GLN TYR ASP ASP GLY SER GLY SEQRES 87 A 1146 MET LYS ARG GLU ALA THR ALA ASP ASP LEU ILE LYS VAL SEQRES 88 A 1146 VAL GLU GLU LEU THR ARG ILE HIS TRP SER HIS PRO GLN SEQRES 89 A 1146 PHE GLU SEQRES 1 C 381 ASN PHE ASP THR SER LEU PRO THR SER HIS THR TYR LEU SEQRES 2 C 381 GLY ALA ASP MET GLU GLU PHE HIS GLY ARG THR LEU HIS SEQRES 3 C 381 ASP ASP ASP SER CYS GLN VAL ILE PRO VAL LEU PRO GLN SEQRES 4 C 381 VAL MET MET ILE LEU ILE PRO GLY GLN THR LEU PRO LEU SEQRES 5 C 381 GLN LEU PHE HIS PRO GLN GLU VAL SER MET VAL ARG ASN SEQRES 6 C 381 LEU ILE GLN LYS ASP ARG THR PHE ALA VAL LEU ALA TYR SEQRES 7 C 381 SER ASN VAL GLN GLU ARG GLU ALA GLN PHE GLY THR THR SEQRES 8 C 381 ALA GLU ILE TYR ALA TYR ARG GLU GLU GLN ASP PHE GLY SEQRES 9 C 381 ILE GLU ILE VAL LYS VAL LYS ALA ILE GLY ARG GLN ARG SEQRES 10 C 381 PHE LYS VAL LEU GLU LEU ARG THR GLN SER ASP GLY ILE SEQRES 11 C 381 GLN GLN ALA LYS VAL GLN ILE LEU PRO GLU CYS VAL LEU SEQRES 12 C 381 PRO SER THR MET SER ALA VAL GLN LEU GLU SER LEU ASN SEQRES 13 C 381 LYS CYS GLN ILE PHE PRO SER LYS PRO VAL SER ARG GLU SEQRES 14 C 381 ASP GLN CYS SER TYR LYS TRP TRP GLN LYS TYR GLN LYS SEQRES 15 C 381 ARG LYS PHE HIS CYS ALA ASN LEU THR SER TRP PRO ARG SEQRES 16 C 381 TRP LEU TYR SER LEU TYR ASP ALA GLU THR LEU MET ASP SEQRES 17 C 381 ARG ILE LYS LYS GLN LEU ARG GLU TRP ASP GLU ASN LEU SEQRES 18 C 381 LYS ASP ASP SER LEU PRO SER ASN PRO ILE ASP PHE SER SEQRES 19 C 381 TYR ARG VAL ALA ALA CYS LEU PRO ILE ASP ASP VAL LEU SEQRES 20 C 381 ARG ILE GLN LEU LEU LYS ILE GLY SER ALA ILE GLN ARG SEQRES 21 C 381 LEU ARG CYS GLU LEU ASP ILE MET ASN LYS CYS THR SER SEQRES 22 C 381 LEU CYS CYS LYS GLN CYS GLN GLU THR GLU ILE THR THR SEQRES 23 C 381 LYS ASN GLU ILE PHE SER LEU SER LEU CYS GLY PRO MET SEQRES 24 C 381 ALA ALA TYR VAL ASN PRO HIS GLY TYR VAL HIS GLU THR SEQRES 25 C 381 LEU THR VAL TYR LYS ALA CYS ASN LEU ASN LEU ILE GLY SEQRES 26 C 381 ARG PRO SER THR GLU HIS SER TRP PHE PRO GLY TYR ALA SEQRES 27 C 381 TRP THR VAL ALA GLN CYS LYS ILE CYS ALA SER HIS ILE SEQRES 28 C 381 GLY TRP LYS PHE THR ALA THR LYS LYS ASP MET SER PRO SEQRES 29 C 381 GLN LYS PHE TRP GLY LEU THR ARG SER ALA LEU LEU PRO SEQRES 30 C 381 THR ILE PRO ASP HET ZN C 501 1 HET LVY C 502 19 HETNAM ZN ZINC ION HETNAM LVY S-LENALIDOMIDE FORMUL 3 ZN ZN 2+ FORMUL 4 LVY C13 H13 N3 O3 FORMUL 5 HOH *18(H2 O) HELIX 1 AA1 PRO A 250 LYS A 254 5 5 HELIX 2 AA2 ALA A 381 GLU A 384 5 4 HELIX 3 AA3 SER A 755 GLN A 759 5 5 HELIX 4 AA4 SER A 1044 ILE A 1062 1 19 HELIX 5 AA5 GLU A 1069 SER A 1075 1 7 HELIX 6 AA6 GLY A 1091 SER A 1096 1 6 HELIX 7 AA7 PHE A 1097 ILE A 1100 5 4 HELIX 8 AA8 SER A 1101 VAL A 1109 1 9 HELIX 9 AA9 THR A 1125 ARG A 1138 1 14 HELIX 10 AB1 LEU C 53 GLY C 61 5 9 HELIX 11 AB2 HIS C 103 ILE C 114 1 12 HELIX 12 AB3 LEU C 199 GLN C 206 5 8 HELIX 13 AB4 TYR C 221 PHE C 232 1 12 HELIX 14 AB5 HIS C 233 THR C 238 5 6 HELIX 15 AB6 PRO C 241 LEU C 247 1 7 HELIX 16 AB7 ASP C 249 GLU C 263 1 15 HELIX 17 AB8 ASN C 276 LEU C 288 1 13 HELIX 18 AB9 ASP C 291 ILE C 301 1 11 HELIX 19 AC1 SER C 303 CYS C 318 1 16 HELIX 20 AC2 ASN C 335 ILE C 337 5 3 SHEET 1 AA1 5 VAL A1004 HIS A1009 0 SHEET 2 AA1 5 GLN A1025 THR A1032 -1 O LEU A1029 N CYS A1008 SHEET 3 AA1 5 ILE A1037 SER A1042 -1 O VAL A1040 N VAL A1028 SHEET 4 AA1 5 ASN A 4 GLN A 10 -1 N TYR A 5 O THR A1041 SHEET 5 AA1 5 PHE A1088 ASP A1090 1 O ILE A1089 N VAL A 6 SHEET 1 AA2 4 GLY A 17 GLY A 21 0 SHEET 2 AA2 4 ASN A 30 LYS A 35 -1 O LEU A 32 N VAL A 19 SHEET 3 AA2 4 ARG A 38 VAL A 43 -1 O GLU A 40 N ILE A 33 SHEET 4 AA2 4 ARG A 50 GLY A 56 -1 O ARG A 50 N VAL A 43 SHEET 1 AA3 4 ILE A 61 PHE A 67 0 SHEET 2 AA3 4 LEU A 76 THR A 81 -1 O PHE A 78 N GLU A 65 SHEET 3 AA3 4 ASN A 85 LYS A 92 -1 O LEU A 89 N LEU A 77 SHEET 4 AA3 4 ASP A 99 ASN A 107 -1 O GLY A 106 N ALA A 86 SHEET 1 AA4 4 ILE A 121 ILE A 124 0 SHEET 2 AA4 4 MET A 130 ARG A 134 -1 O GLY A 132 N ILE A 123 SHEET 3 AA4 4 LEU A 139 PRO A 144 -1 O LYS A 141 N LEU A 133 SHEET 4 AA4 4 PHE A 155 ARG A 158 -1 O PHE A 155 N VAL A 142 SHEET 1 AA5 4 VAL A 164 PHE A 169 0 SHEET 2 AA5 4 THR A 177 ASP A 184 -1 O CYS A 179 N LYS A 168 SHEET 3 AA5 4 GLY A 187 SER A 196 -1 O HIS A 189 N TYR A 182 SHEET 4 AA5 4 GLU A 201 LYS A 204 -1 O ASN A 203 N GLU A 194 SHEET 1 AA6 4 MET A 218 ALA A 221 0 SHEET 2 AA6 4 ALA A 229 ILE A 232 -1 O ILE A 230 N ILE A 220 SHEET 3 AA6 4 ILE A 237 ASN A 241 -1 O THR A 238 N ILE A 231 SHEET 4 AA6 4 LYS A 244 ILE A 248 -1 O LEU A 246 N TYR A 239 SHEET 1 AA7 4 CYS A 260 ARG A 263 0 SHEET 2 AA7 4 ARG A 270 GLY A 274 -1 O LEU A 272 N ASN A 262 SHEET 3 AA7 4 ARG A 279 GLU A 286 -1 O PHE A 281 N LEU A 273 SHEET 4 AA7 4 ASP A 299 GLU A 307 -1 O ASP A 299 N GLU A 286 SHEET 1 AA8 4 ALA A 311 TYR A 316 0 SHEET 2 AA8 4 VAL A 321 SER A 326 -1 O GLY A 325 N GLU A 312 SHEET 3 AA8 4 SER A 331 ASN A 337 -1 O VAL A 334 N VAL A 322 SHEET 4 AA8 4 TYR A 346 PHE A 353 -1 O MET A 350 N LEU A 333 SHEET 1 AA9 4 ILE A 359 VAL A 365 0 SHEET 2 AA9 4 GLN A 374 SER A 379 -1 O CYS A 378 N ASP A 361 SHEET 3 AA9 4 SER A 386 GLY A 393 -1 O SER A 386 N SER A 379 SHEET 4 AA9 4 LYS A 709 PRO A 716 -1 O VAL A 715 N LEU A 387 SHEET 1 AB1 4 ILE A 396 ASP A 403 0 SHEET 2 AB1 4 THR A 698 ILE A 704 -1 O LEU A 699 N ILE A 402 SHEET 3 AB1 4 SER A 690 ALA A 694 -1 N LEU A 693 O THR A 700 SHEET 4 AB1 4 TYR A 678 LEU A 682 -1 N TYR A 678 O ALA A 694 SHEET 1 AB2 4 GLY A 409 LEU A 413 0 SHEET 2 AB2 4 THR A 424 PHE A 429 -1 O VAL A 426 N TRP A 411 SHEET 3 AB2 4 GLN A 432 ASN A 439 -1 O LEU A 436 N LEU A 425 SHEET 4 AB2 4 GLU A 442 THR A 446 -1 O GLU A 444 N MET A 437 SHEET 1 AB3 4 THR A 457 VAL A 463 0 SHEET 2 AB3 4 GLN A 467 THR A 472 -1 O ILE A 471 N PHE A 459 SHEET 3 AB3 4 VAL A 476 SER A 480 -1 O VAL A 479 N LEU A 468 SHEET 4 AB3 4 LEU A 486 TRP A 490 -1 O TRP A 490 N VAL A 476 SHEET 1 AB4 4 VAL A 500 CYS A 503 0 SHEET 2 AB4 4 GLN A 507 VAL A 512 -1 O ALA A 511 N VAL A 500 SHEET 3 AB4 4 ALA A 515 GLN A 520 -1 O LEU A 519 N VAL A 508 SHEET 4 AB4 4 GLN A 528 HIS A 531 -1 O ILE A 529 N TYR A 518 SHEET 1 AB5 3 CYS A 540 ASP A 542 0 SHEET 2 AB5 3 LEU A 555 GLY A 559 -1 O ALA A 557 N ASP A 542 SHEET 3 AB5 3 ALA A 566 LYS A 570 -1 O ARG A 567 N ILE A 558 SHEET 1 AB6 4 PRO A 588 PHE A 596 0 SHEET 2 AB6 4 SER A 599 LEU A 606 -1 O LEU A 603 N LEU A 592 SHEET 3 AB6 4 ALA A 610 GLY A 615 -1 O ALA A 610 N LEU A 606 SHEET 4 AB6 4 LYS A 628 THR A 630 -1 O VAL A 629 N LEU A 611 SHEET 1 AB7 3 VAL A 637 ARG A 642 0 SHEET 2 AB7 3 THR A 647 CYS A 652 -1 O ASN A 648 N PHE A 641 SHEET 3 AB7 3 THR A 657 ILE A 659 -1 O THR A 657 N ALA A 651 SHEET 1 AB8 3 SER A 720 GLN A 727 0 SHEET 2 AB8 3 CYS A 732 VAL A 742 -1 O LEU A 736 N ARG A 722 SHEET 3 AB8 3 THR A 750 ALA A 751 -1 O THR A 750 N VAL A 742 SHEET 1 AB9 5 SER A 720 GLN A 727 0 SHEET 2 AB9 5 CYS A 732 VAL A 742 -1 O LEU A 736 N ARG A 722 SHEET 3 AB9 5 GLU A 785 ASP A 795 -1 O ASN A 790 N SER A 737 SHEET 4 AB9 5 VAL A 801 GLN A 806 -1 O HIS A 803 N ILE A 793 SHEET 5 AB9 5 SER A 762 VAL A 765 1 N SER A 764 O ALA A 804 SHEET 1 AC1 4 GLU A 811 CYS A 819 0 SHEET 2 AC1 4 TYR A 828 MET A 835 -1 O ALA A 834 N TYR A 812 SHEET 3 AC1 4 GLY A 846 SER A 854 -1 O PHE A 851 N PHE A 829 SHEET 4 AC1 4 LYS A 857 VAL A 866 -1 O ALA A 862 N VAL A 850 SHEET 1 AC2 4 VAL A 870 PHE A 876 0 SHEET 2 AC2 4 LYS A 879 ILE A 884 -1 O LYS A 879 N PHE A 876 SHEET 3 AC2 4 THR A 887 TRP A 893 -1 O ARG A 889 N ALA A 882 SHEET 4 AC2 4 LEU A 899 TYR A 906 -1 O ARG A 900 N GLU A 892 SHEET 1 AC3 4 TYR A 913 LYS A 917 0 SHEET 2 AC3 4 PHE A 920 GLY A 924 -1 O LEU A 922 N LYS A 915 SHEET 3 AC3 4 VAL A 930 TYR A 935 -1 O LEU A 933 N ILE A 921 SHEET 4 AC3 4 PHE A 942 ASP A 948 -1 O ILE A 945 N LEU A 932 SHEET 1 AC4 4 MET A 954 ASP A 961 0 SHEET 2 AC4 4 ASN A 964 GLU A 969 -1 O LEU A 966 N GLU A 958 SHEET 3 AC4 4 ASN A 973 GLN A 978 -1 O ASN A 973 N GLU A 969 SHEET 4 AC4 4 GLN A 993 HIS A 999 -1 O PHE A 998 N LEU A 974 SHEET 1 AC5 2 GLN A1113 TYR A1114 0 SHEET 2 AC5 2 ARG A1122 GLU A1123 -1 O ARG A1122 N TYR A1114 SHEET 1 AC6 7 GLU C 65 GLU C 66 0 SHEET 2 AC6 7 PHE C 135 ASP C 149 -1 O TYR C 144 N GLU C 65 SHEET 3 AC6 7 THR C 119 LEU C 123 -1 N VAL C 122 O THR C 137 SHEET 4 AC6 7 CYS C 78 VAL C 83 1 N PRO C 82 O ALA C 121 SHEET 5 AC6 7 GLN C 178 ILE C 184 -1 O VAL C 182 N GLN C 79 SHEET 6 AC6 7 ILE C 152 ARG C 171 -1 N GLU C 169 O LYS C 181 SHEET 7 AC6 7 THR C 96 LEU C 101 -1 N LEU C 97 O ALA C 159 SHEET 1 AC7 4 GLU C 65 GLU C 66 0 SHEET 2 AC7 4 PHE C 135 ASP C 149 -1 O TYR C 144 N GLU C 65 SHEET 3 AC7 4 ILE C 152 ARG C 171 -1 O ARG C 162 N THR C 138 SHEET 4 AC7 4 THR C 96 LEU C 101 -1 N LEU C 97 O ALA C 159 SHEET 1 AC8 3 GLU C 330 THR C 333 0 SHEET 2 AC8 3 SER C 320 CYS C 323 -1 N LEU C 321 O ILE C 331 SHEET 3 AC8 3 LEU C 422 THR C 425 -1 O THR C 425 N SER C 320 SHEET 1 AC9 6 MET C 346 VAL C 350 0 SHEET 2 AC9 6 VAL C 356 VAL C 362 -1 O HIS C 357 N TYR C 349 SHEET 3 AC9 6 LYS C 413 THR C 418 -1 O TRP C 415 N VAL C 362 SHEET 4 AC9 6 HIS C 397 ALA C 404 -1 N TRP C 400 O GLY C 416 SHEET 5 AC9 6 TYR C 384 CYS C 391 -1 N THR C 387 O LYS C 401 SHEET 6 AC9 6 LEU C 368 SER C 375 -1 N SER C 375 O TRP C 386 SSBOND 1 CYS A 18 CYS A 313 1555 1555 2.16 LINK SG CYS C 323 ZN ZN C 501 1555 1555 2.28 LINK SG CYS C 326 ZN ZN C 501 1555 1555 2.40 LINK SG CYS C 391 ZN ZN C 501 1555 1555 2.11 LINK SG CYS C 394 ZN ZN C 501 1555 1555 2.28 CISPEP 1 TYR A 660 SER A 661 0 14.14 CISPEP 2 GLN C 115 LYS C 116 0 -24.11 SITE 1 AC1 4 CYS C 323 CYS C 326 CYS C 391 CYS C 394 SITE 1 AC2 8 ASN C 351 PRO C 352 HIS C 378 SER C 379 SITE 2 AC2 8 TRP C 380 TRP C 386 TRP C 400 PHE C 402 CRYST1 71.862 129.117 198.677 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013916 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007745 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005033 0.00000