HEADER TRANSFERASE 11-JUL-14 4U07 TITLE ATP BOUND TO EUKARYOTIC FIC DOMAIN CONTAINING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE FICD; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 102-445; COMPND 5 SYNONYM: HYPE,AMPYLATOR FICD,FIC DOMAIN-CONTAINING PROTEIN,HUNTINGTIN COMPND 6 YEAST PARTNER E,HUNTINGTIN-INTERACTING PROTEIN 13,HIP-13,HUNTINGTIN- COMPND 7 INTERACTING PROTEIN E; COMPND 8 EC: 2.7.7.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FICD, HIP13, HYPE, UNQ3041/PRO9857; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TPR, FIC, ATP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.R.COLE,T.D.BUNNEY,M.KATAN REVDAT 4 20-DEC-23 4U07 1 LINK REVDAT 3 04-FEB-15 4U07 1 JRNL REVDAT 2 31-DEC-14 4U07 1 REVDAT 1 10-DEC-14 4U07 0 JRNL AUTH T.D.BUNNEY,A.R.COLE,M.BRONCEL,D.ESPOSITO,E.W.TATE,M.KATAN JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN, FIC-DOMAIN CONTAINING JRNL TITL 2 PROTEIN HYPE AND IMPLICATIONS FOR ITS FUNCTIONS. JRNL REF STRUCTURE V. 22 1831 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 25435325 JRNL DOI 10.1016/J.STR.2014.10.007 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 27305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 1428 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.74 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.02 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2641 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2211 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2481 REMARK 3 BIN R VALUE (WORKING SET) : 0.2181 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.06 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 160 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5058 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.43790 REMARK 3 B22 (A**2) : 22.30730 REMARK 3 B33 (A**2) : -17.86950 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -42.03470 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.362 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.475 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.292 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.830 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.817 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 10180 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 18349 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2246 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 114 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1567 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 10180 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 714 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 11286 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.87 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.64 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U07 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27626 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 48.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CUC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 200MM NA K TARTRATE, REMARK 280 100MM BIST-TRIS PROPANE 7.5, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.05700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 102 REMARK 465 LYS A 103 REMARK 465 LEU A 104 REMARK 465 GLU A 105 REMARK 465 ALA A 106 REMARK 465 ARG A 107 REMARK 465 PRO A 209 REMARK 465 LYS A 210 REMARK 465 GLY A 211 REMARK 465 THR A 434 REMARK 465 GLU A 435 REMARK 465 TYR A 436 REMARK 465 SER A 437 REMARK 465 VAL A 438 REMARK 465 ALA A 439 REMARK 465 LEU A 440 REMARK 465 PRO A 441 REMARK 465 GLU A 442 REMARK 465 ALA A 443 REMARK 465 GLN A 444 REMARK 465 PRO A 445 REMARK 465 GLY B 102 REMARK 465 LYS B 103 REMARK 465 LEU B 104 REMARK 465 GLU B 105 REMARK 465 ALA B 106 REMARK 465 ARG B 107 REMARK 465 PRO B 209 REMARK 465 LYS B 210 REMARK 465 GLY B 211 REMARK 465 THR B 434 REMARK 465 GLU B 435 REMARK 465 TYR B 436 REMARK 465 SER B 437 REMARK 465 VAL B 438 REMARK 465 ALA B 439 REMARK 465 LEU B 440 REMARK 465 PRO B 441 REMARK 465 GLU B 442 REMARK 465 ALA B 443 REMARK 465 GLN B 444 REMARK 465 PRO B 445 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 110 CG CD1 CD2 REMARK 470 ASN A 111 CG OD1 ND2 REMARK 470 GLN A 112 CG CD OE1 NE2 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 MET A 116 CG SD CE REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 119 CG CD OE1 NE2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 ARG A 122 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 HIS A 131 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 133 CG CD1 CD2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 ASP A 181 CG OD1 OD2 REMARK 470 LYS A 203 CE NZ REMARK 470 LYS A 204 CE NZ REMARK 470 ARG A 216 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 GLU A 234 CB CG CD OE1 OE2 REMARK 470 THR A 372 CG2 REMARK 470 LYS A 393 CE NZ REMARK 470 ARG A 396 CZ NH1 NH2 REMARK 470 GLU A 408 OE1 OE2 REMARK 470 LYS A 420 CG CD CE NZ REMARK 470 GLN B 112 CG CD OE1 NE2 REMARK 470 GLU B 115 CG CD OE1 OE2 REMARK 470 MET B 116 CG SD CE REMARK 470 ARG B 118 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 119 CG CD OE1 NE2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 HIS B 131 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 133 CG CD1 CD2 REMARK 470 LYS B 134 CG CD CE NZ REMARK 470 GLU B 174 CG CD OE1 OE2 REMARK 470 ASP B 181 CG OD1 OD2 REMARK 470 LYS B 203 CE NZ REMARK 470 LYS B 204 CE NZ REMARK 470 ARG B 216 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 221 CG CD OE1 OE2 REMARK 470 GLU B 234 CB CG CD OE1 OE2 REMARK 470 ARG B 244 NE CZ NH1 NH2 REMARK 470 THR B 372 CG2 REMARK 470 LYS B 393 CE NZ REMARK 470 ARG B 396 CZ NH1 NH2 REMARK 470 GLU B 408 OE1 OE2 REMARK 470 LYS B 420 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 141 OE2 GLU B 145 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 119 103.04 70.84 REMARK 500 ASP A 136 92.82 -166.92 REMARK 500 ASP A 155 77.01 -100.94 REMARK 500 MET A 206 52.57 -95.30 REMARK 500 SER A 207 50.95 -162.17 REMARK 500 HIS A 363 62.64 63.05 REMARK 500 ARG B 118 99.85 -64.30 REMARK 500 GLN B 119 102.61 70.95 REMARK 500 ASP B 136 92.79 -166.68 REMARK 500 ASP B 155 76.92 -100.38 REMARK 500 MET B 206 52.54 -95.33 REMARK 500 SER B 207 50.95 -161.23 REMARK 500 PRO B 322 156.02 -48.96 REMARK 500 ALA B 432 47.52 -97.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 620 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH A 635 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 648 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH A 653 DISTANCE = 5.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 367 OD1 REMARK 620 2 ATP A 502 O1B 89.4 REMARK 620 3 ATP A 502 O1A 87.4 70.8 REMARK 620 4 HOH A 606 O 151.9 66.2 97.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 367 OD1 REMARK 620 2 ATP B 502 O1B 91.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4U04 RELATED DB: PDB REMARK 900 4U04 IS THE APO STRUCTURE DBREF 4U07 A 102 445 UNP Q9BVA6 FICD_HUMAN 102 445 DBREF 4U07 B 102 445 UNP Q9BVA6 FICD_HUMAN 102 445 SEQRES 1 A 344 GLY LYS LEU GLU ALA ARG ALA ALA LEU ASN GLN ALA LEU SEQRES 2 A 344 GLU MET LYS ARG GLN GLY LYS ARG GLU LYS ALA GLN LYS SEQRES 3 A 344 LEU PHE MET HIS ALA LEU LYS MET ASP PRO ASP PHE VAL SEQRES 4 A 344 ASP ALA LEU THR GLU PHE GLY ILE PHE SER GLU GLU ASP SEQRES 5 A 344 LYS ASP ILE ILE GLN ALA ASP TYR LEU TYR THR ARG ALA SEQRES 6 A 344 LEU THR ILE SER PRO TYR HIS GLU LYS ALA LEU VAL ASN SEQRES 7 A 344 ARG ASP ARG THR LEU PRO LEU VAL GLU GLU ILE ASP GLN SEQRES 8 A 344 ARG TYR PHE SER ILE ILE ASP SER LYS VAL LYS LYS VAL SEQRES 9 A 344 MET SER ILE PRO LYS GLY ASN SER ALA LEU ARG ARG VAL SEQRES 10 A 344 MET GLU GLU THR TYR TYR HIS HIS ILE TYR HIS THR VAL SEQRES 11 A 344 ALA ILE GLU GLY ASN THR LEU THR LEU SER GLU ILE ARG SEQRES 12 A 344 HIS ILE LEU GLU THR ARG TYR ALA VAL PRO GLY LYS SER SEQRES 13 A 344 LEU GLU GLU GLN ASN GLU VAL ILE GLY MET HIS ALA ALA SEQRES 14 A 344 MET LYS TYR ILE ASN THR THR LEU VAL SER ARG ILE GLY SEQRES 15 A 344 SER VAL THR ILE SER ASP VAL LEU GLU ILE HIS ARG ARG SEQRES 16 A 344 VAL LEU GLY TYR VAL ASP PRO VAL GLU ALA GLY ARG PHE SEQRES 17 A 344 ARG THR THR GLN VAL LEU VAL GLY HIS HIS ILE PRO PRO SEQRES 18 A 344 HIS PRO GLN ASP VAL GLU LYS GLN MET GLN GLU PHE VAL SEQRES 19 A 344 GLN TRP LEU ASN SER GLU GLU ALA MET ASN LEU HIS PRO SEQRES 20 A 344 VAL GLU PHE ALA ALA LEU ALA HIS TYR LYS LEU VAL TYR SEQRES 21 A 344 ILE HIS PRO PHE ILE ASP GLY ASN GLY ARG THR SER ARG SEQRES 22 A 344 LEU LEU MET ASN LEU ILE LEU MET GLN ALA GLY TYR PRO SEQRES 23 A 344 PRO ILE THR ILE ARG LYS GLU GLN ARG SER ASP TYR TYR SEQRES 24 A 344 HIS VAL LEU GLU ALA ALA ASN GLU GLY ASP VAL ARG PRO SEQRES 25 A 344 PHE ILE ARG PHE ILE ALA LYS CYS THR GLU THR THR LEU SEQRES 26 A 344 ASP THR LEU LEU PHE ALA THR THR GLU TYR SER VAL ALA SEQRES 27 A 344 LEU PRO GLU ALA GLN PRO SEQRES 1 B 344 GLY LYS LEU GLU ALA ARG ALA ALA LEU ASN GLN ALA LEU SEQRES 2 B 344 GLU MET LYS ARG GLN GLY LYS ARG GLU LYS ALA GLN LYS SEQRES 3 B 344 LEU PHE MET HIS ALA LEU LYS MET ASP PRO ASP PHE VAL SEQRES 4 B 344 ASP ALA LEU THR GLU PHE GLY ILE PHE SER GLU GLU ASP SEQRES 5 B 344 LYS ASP ILE ILE GLN ALA ASP TYR LEU TYR THR ARG ALA SEQRES 6 B 344 LEU THR ILE SER PRO TYR HIS GLU LYS ALA LEU VAL ASN SEQRES 7 B 344 ARG ASP ARG THR LEU PRO LEU VAL GLU GLU ILE ASP GLN SEQRES 8 B 344 ARG TYR PHE SER ILE ILE ASP SER LYS VAL LYS LYS VAL SEQRES 9 B 344 MET SER ILE PRO LYS GLY ASN SER ALA LEU ARG ARG VAL SEQRES 10 B 344 MET GLU GLU THR TYR TYR HIS HIS ILE TYR HIS THR VAL SEQRES 11 B 344 ALA ILE GLU GLY ASN THR LEU THR LEU SER GLU ILE ARG SEQRES 12 B 344 HIS ILE LEU GLU THR ARG TYR ALA VAL PRO GLY LYS SER SEQRES 13 B 344 LEU GLU GLU GLN ASN GLU VAL ILE GLY MET HIS ALA ALA SEQRES 14 B 344 MET LYS TYR ILE ASN THR THR LEU VAL SER ARG ILE GLY SEQRES 15 B 344 SER VAL THR ILE SER ASP VAL LEU GLU ILE HIS ARG ARG SEQRES 16 B 344 VAL LEU GLY TYR VAL ASP PRO VAL GLU ALA GLY ARG PHE SEQRES 17 B 344 ARG THR THR GLN VAL LEU VAL GLY HIS HIS ILE PRO PRO SEQRES 18 B 344 HIS PRO GLN ASP VAL GLU LYS GLN MET GLN GLU PHE VAL SEQRES 19 B 344 GLN TRP LEU ASN SER GLU GLU ALA MET ASN LEU HIS PRO SEQRES 20 B 344 VAL GLU PHE ALA ALA LEU ALA HIS TYR LYS LEU VAL TYR SEQRES 21 B 344 ILE HIS PRO PHE ILE ASP GLY ASN GLY ARG THR SER ARG SEQRES 22 B 344 LEU LEU MET ASN LEU ILE LEU MET GLN ALA GLY TYR PRO SEQRES 23 B 344 PRO ILE THR ILE ARG LYS GLU GLN ARG SER ASP TYR TYR SEQRES 24 B 344 HIS VAL LEU GLU ALA ALA ASN GLU GLY ASP VAL ARG PRO SEQRES 25 B 344 PHE ILE ARG PHE ILE ALA LYS CYS THR GLU THR THR LEU SEQRES 26 B 344 ASP THR LEU LEU PHE ALA THR THR GLU TYR SER VAL ALA SEQRES 27 B 344 LEU PRO GLU ALA GLN PRO HET MG A 501 1 HET ATP A 502 31 HET PG4 A 503 13 HET MG B 501 1 HET ATP B 502 31 HET PG4 B 503 13 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 3 MG 2(MG 2+) FORMUL 4 ATP 2(C10 H16 N5 O13 P3) FORMUL 5 PG4 2(C8 H18 O5) FORMUL 9 HOH *117(H2 O) HELIX 1 AA1 ALA A 109 ARG A 118 1 10 HELIX 2 AA2 LYS A 121 MET A 135 1 15 HELIX 3 AA3 PHE A 139 ASP A 153 1 15 HELIX 4 AA4 ASP A 155 SER A 170 1 16 HELIX 5 AA5 HIS A 173 MET A 206 1 34 HELIX 6 AA6 LEU A 215 ILE A 233 1 19 HELIX 7 AA7 THR A 239 ARG A 250 1 12 HELIX 8 AA8 SER A 257 LEU A 278 1 22 HELIX 9 AA9 THR A 286 LEU A 298 1 13 HELIX 10 AB1 ASP A 326 SER A 340 1 15 HELIX 11 AB2 SER A 340 ASN A 345 1 6 HELIX 12 AB3 HIS A 347 HIS A 363 1 17 HELIX 13 AB4 GLY A 368 ALA A 384 1 17 HELIX 14 AB5 ARG A 392 GLU A 394 5 3 HELIX 15 AB6 GLN A 395 GLU A 408 1 14 HELIX 16 AB7 VAL A 411 PHE A 431 1 21 HELIX 17 AB8 ALA B 109 ARG B 118 1 10 HELIX 18 AB9 LYS B 121 ASP B 136 1 16 HELIX 19 AC1 PHE B 139 ASP B 153 1 15 HELIX 20 AC2 ASP B 155 SER B 170 1 16 HELIX 21 AC3 HIS B 173 MET B 206 1 34 HELIX 22 AC4 LEU B 215 ILE B 233 1 19 HELIX 23 AC5 THR B 239 ARG B 250 1 12 HELIX 24 AC6 SER B 257 LEU B 278 1 22 HELIX 25 AC7 THR B 286 LEU B 298 1 13 HELIX 26 AC8 ASP B 326 SER B 340 1 15 HELIX 27 AC9 SER B 340 ASN B 345 1 6 HELIX 28 AD1 HIS B 347 HIS B 363 1 17 HELIX 29 AD2 GLY B 368 ALA B 384 1 17 HELIX 30 AD3 ARG B 392 GLU B 394 5 3 HELIX 31 AD4 GLN B 395 GLY B 409 1 15 HELIX 32 AD5 VAL B 411 ALA B 432 1 22 LINK OD1 ASP A 367 MG MG A 501 1555 1555 1.98 LINK MG MG A 501 O1B ATP A 502 1555 1555 2.75 LINK MG MG A 501 O1A ATP A 502 1555 1555 2.32 LINK MG MG A 501 O HOH A 606 1555 1555 2.38 LINK OD1 ASP B 367 MG MG B 501 1555 1555 2.24 LINK MG MG B 501 O1B ATP B 502 1555 1555 2.72 SITE 1 AC1 3 ASP A 367 ATP A 502 HOH A 606 SITE 1 AC2 19 ILE A 233 GLU A 234 HIS A 319 HIS A 356 SITE 2 AC2 19 VAL A 360 HIS A 363 ASP A 367 GLY A 368 SITE 3 AC2 19 ASN A 369 GLY A 370 ARG A 371 ARG A 374 SITE 4 AC2 19 TYR A 399 TYR A 400 LEU A 403 ASN A 407 SITE 5 AC2 19 MG A 501 HOH A 606 HOH A 639 SITE 1 AC3 4 TRP A 337 TYR A 357 LYS A 358 HOH A 690 SITE 1 AC4 2 ASP B 367 ATP B 502 SITE 1 AC5 18 ILE B 233 GLU B 234 VAL B 316 HIS B 319 SITE 2 AC5 18 VAL B 360 HIS B 363 ASP B 367 GLY B 368 SITE 3 AC5 18 ASN B 369 GLY B 370 ARG B 371 ARG B 374 SITE 4 AC5 18 TYR B 399 TYR B 400 LEU B 403 ASN B 407 SITE 5 AC5 18 MG B 501 HOH B 604 SITE 1 AC6 1 LYS B 358 CRYST1 71.254 76.114 92.189 90.00 107.28 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014034 0.000000 0.004366 0.00000 SCALE2 0.000000 0.013138 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011360 0.00000