HEADER UNKNOWN FUNCTION 11-JUL-14 4U08 TITLE STRUCTURE OF LEPTOSPIRA INTERROGANS LRR PROTEIN LIC11098 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIC11098; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 30-426; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPTOSPIRA INTERROGANS SEROGROUP SOURCE 3 ICTEROHAEMORRHAGIAE SEROVAR COPENHAGENI (STRAIN FIOCRUZ L1-130); SOURCE 4 ORGANISM_TAXID: 267671; SOURCE 5 STRAIN: FIOCRUZ L1-130; SOURCE 6 GENE: LIC_11098; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PDEST17 KEYWDS LRR PROTEIN, PATHOGEN, VIRULENCE FACTOR, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR W.SHEPARD,F.A.SAUL,A.HAOUZ,M.PICARDEAU REVDAT 3 20-DEC-23 4U08 1 LINK REVDAT 2 17-JUN-15 4U08 1 JRNL REVDAT 1 03-JUN-15 4U08 0 JRNL AUTH I.MIRAS,F.SAUL,M.NOWAKOWSKI,P.WEBER,A.HAOUZ,W.SHEPARD, JRNL AUTH 2 M.PICARDEAU JRNL TITL STRUCTURAL CHARACTERIZATION OF A NOVEL SUBFAMILY OF JRNL TITL 2 LEUCINE-RICH REPEAT PROTEINS FROM THE HUMAN PATHOGEN JRNL TITL 3 LEPTOSPIRA INTERROGANS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1351 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 26057675 JRNL DOI 10.1107/S139900471500704X REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 76690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1544 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.99 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5608 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2764 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5494 REMARK 3 BIN R VALUE (WORKING SET) : 0.2764 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.03 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 114 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 488 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.10580 REMARK 3 B22 (A**2) : 2.10580 REMARK 3 B33 (A**2) : -4.21160 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.282 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.155 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.137 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.152 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.137 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6404 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8662 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2436 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 264 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 838 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6404 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 828 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7457 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.92 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.75 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U08 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202603. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : CHANNEL CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76748 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 46.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.96200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4U09 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, 200 MM CALCIUM ACETATE, 10MM REMARK 280 ZINC ACETATE, 100 MM CACODYLATE, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.81533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.90767 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.90767 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.81533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMER REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMER REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 30 REMARK 465 SER A 31 REMARK 465 ASN A 32 REMARK 465 GLU A 33 REMARK 465 ALA A 34 REMARK 465 GLU A 426 REMARK 465 GLU A 427 REMARK 465 GLN B 30 REMARK 465 SER B 31 REMARK 465 ASN B 32 REMARK 465 GLU B 33 REMARK 465 ALA B 34 REMARK 465 GLU B 426 REMARK 465 GLU B 427 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 49 -8.65 71.80 REMARK 500 ASN A 105 -159.96 -126.45 REMARK 500 GLU A 127 73.19 60.94 REMARK 500 ASN A 151 -162.37 -128.54 REMARK 500 ASN A 174 -154.83 -126.41 REMARK 500 ASN A 197 -160.34 -118.77 REMARK 500 ASN A 220 -149.87 -106.22 REMARK 500 ASN A 243 -161.48 -118.64 REMARK 500 ASN A 266 -161.49 -121.44 REMARK 500 ASN A 289 -162.85 -114.48 REMARK 500 ASN A 358 -158.34 -101.09 REMARK 500 ASN A 381 -167.89 -122.20 REMARK 500 ASN B 105 -158.72 -126.93 REMARK 500 GLU B 127 67.46 63.03 REMARK 500 ASN B 151 -163.28 -127.37 REMARK 500 ASN B 174 -154.21 -124.34 REMARK 500 ASN B 197 -156.62 -117.52 REMARK 500 ASN B 220 -149.18 -105.06 REMARK 500 ASN B 243 -161.62 -118.40 REMARK 500 ASN B 266 -161.74 -121.60 REMARK 500 ASN B 289 -167.10 -113.71 REMARK 500 ASN B 358 -167.54 -119.98 REMARK 500 GLN B 359 51.85 -113.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 866 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH B 821 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH B 822 DISTANCE = 7.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 158 OE2 REMARK 620 2 GLU B 127 OE1 34.5 REMARK 620 3 HIS B 150 ND1 33.3 3.7 REMARK 620 4 SO4 B 501 S 31.1 3.5 3.5 REMARK 620 5 SO4 B 501 O3 31.5 3.0 3.8 0.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 190 OE2 REMARK 620 2 GLU A 213 OE1 97.1 REMARK 620 3 HOH A 764 O 162.2 65.9 REMARK 620 4 GLU B 190 OE2 93.6 103.2 95.4 REMARK 620 5 GLU B 213 OE1 104.1 153.7 91.0 90.9 REMARK 620 6 HOH B 656 O 86.6 111.8 94.8 144.7 55.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 196 NE2 REMARK 620 2 HIS A 219 ND1 112.6 REMARK 620 3 HOH A 793 O 111.7 102.0 REMARK 620 4 HOH B 763 O 129.1 89.9 106.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 239 ND1 REMARK 620 2 HOH A 780 O 118.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 310 OD1 REMARK 620 2 ASP A 310 OD2 51.9 REMARK 620 3 HIS B 402 NE2 99.7 127.1 REMARK 620 4 HOH B 789 O 95.7 121.6 102.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 357 NE2 REMARK 620 2 HOH A 699 O 89.9 REMARK 620 3 HIS B 357 NE2 63.9 91.9 REMARK 620 4 HOH B 759 O 103.0 156.5 111.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 402 NE2 REMARK 620 2 HOH A 801 O 111.9 REMARK 620 3 ASP B 310 OD1 91.4 103.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 729 O REMARK 620 2 ASP B 80 OD2 97.3 REMARK 620 3 HIS B 101 ND1 90.3 132.1 REMARK 620 4 HOH B 713 O 134.8 108.8 97.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 817 O REMARK 620 2 HIS B 196 NE2 112.8 REMARK 620 3 HIS B 219 ND1 110.3 107.8 REMARK 620 4 HOH B 782 O 110.8 110.1 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 239 ND1 REMARK 620 2 HOH B 753 O 114.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZTH RELATED DB: PDB REMARK 900 RELATED ID: 4U06 RELATED DB: PDB REMARK 900 RELATED ID: 4UO9 RELATED DB: PDB DBREF 4U08 A 30 426 UNP Q72TC3 Q72TC3_LEPIC 30 426 DBREF 4U08 B 30 426 UNP Q72TC3 Q72TC3_LEPIC 30 426 SEQADV 4U08 GLU A 427 UNP Q72TC3 EXPRESSION TAG SEQADV 4U08 GLU B 427 UNP Q72TC3 EXPRESSION TAG SEQRES 1 A 398 GLN SER ASN GLU ALA GLN THR TYR TYR ARG ASN ILE THR SEQRES 2 A 398 GLU ALA LEU LYS ASN PRO GLN ASN VAL ARG ILE LEU ASN SEQRES 3 A 398 LEU SER GLY SER LYS LEU THR THR LEU PRO GLY GLU ILE SEQRES 4 A 398 GLY LYS LEU GLN ASN LEU GLN LEU LEU ASN LEU ASP ASP SEQRES 5 A 398 ASN GLN LEU ILE ALA LEU PRO LYS GLU ILE GLY LYS LEU SEQRES 6 A 398 GLN ASN LEU GLN GLN LEU HIS LEU SER LYS ASN GLN LEU SEQRES 7 A 398 MSE ALA LEU PRO GLU GLU ILE GLY GLN LEU GLN ASN LEU SEQRES 8 A 398 GLN LYS LEU LYS LEU TYR GLU ASN GLN LEU THR ALA ILE SEQRES 9 A 398 PRO LYS GLU ILE GLY GLN LEU GLN ASN LEU GLN GLU LEU SEQRES 10 A 398 ASN LEU ALA HIS ASN GLN LEU ALA THR LEU PRO GLU ASP SEQRES 11 A 398 ILE GLU GLN LEU GLN ARG LEU GLN THR LEU TYR LEU GLY SEQRES 12 A 398 HIS ASN GLN PHE ASN SER ILE LEU LYS GLU ILE GLY GLN SEQRES 13 A 398 LEU GLN ASN LEU GLU SER LEU GLY LEU ASP HIS ASN GLN SEQRES 14 A 398 LEU ASN VAL LEU PRO LYS GLU ILE GLY GLN LEU ARG ASN SEQRES 15 A 398 LEU GLU SER LEU GLY LEU ASP HIS ASN GLN LEU ASN VAL SEQRES 16 A 398 LEU PRO LYS GLU ILE GLY GLN LEU GLN ASN LEU GLN ILE SEQRES 17 A 398 LEU HIS LEU ARG ASN ASN GLN LEU THR THR LEU PRO LYS SEQRES 18 A 398 GLU ILE GLY GLN LEU GLN ASN LEU GLN LYS LEU LEU LEU SEQRES 19 A 398 ASN LYS ASN LYS LEU THR THR LEU PRO LYS GLU ILE GLY SEQRES 20 A 398 GLN LEU GLN ASN LEU GLN LYS LEU LYS LEU TYR GLU ASN SEQRES 21 A 398 GLN LEU THR THR LEU PRO LYS GLU ILE GLY GLN LEU GLN SEQRES 22 A 398 ASN LEU GLN GLU LEU ASP LEU ASP GLY ASN GLN LEU THR SEQRES 23 A 398 THR LEU PRO GLU ASN ILE GLY GLN LEU GLN ARG LEU GLN SEQRES 24 A 398 THR LEU TYR LEU GLY ASN ASN GLN LEU ASN PHE LEU PRO SEQRES 25 A 398 LYS GLU ILE GLY GLN LEU ARG ASN LEU GLU SER LEU ASP SEQRES 26 A 398 LEU GLU HIS ASN GLN LEU ASN ALA LEU PRO LYS GLU ILE SEQRES 27 A 398 GLY LYS LEU GLN LYS LEU GLN THR LEU ASN LEU LYS TYR SEQRES 28 A 398 ASN GLN LEU ALA THR LEU PRO GLU GLU ILE LYS GLN LEU SEQRES 29 A 398 LYS ASN LEU LYS LYS LEU TYR LEU HIS ASN ASN PRO LEU SEQRES 30 A 398 PRO SER GLU LYS ILE ALA ARG ILE ARG LYS LEU LEU PRO SEQRES 31 A 398 GLN CYS ILE ILE TYR PHE GLU GLU SEQRES 1 B 398 GLN SER ASN GLU ALA GLN THR TYR TYR ARG ASN ILE THR SEQRES 2 B 398 GLU ALA LEU LYS ASN PRO GLN ASN VAL ARG ILE LEU ASN SEQRES 3 B 398 LEU SER GLY SER LYS LEU THR THR LEU PRO GLY GLU ILE SEQRES 4 B 398 GLY LYS LEU GLN ASN LEU GLN LEU LEU ASN LEU ASP ASP SEQRES 5 B 398 ASN GLN LEU ILE ALA LEU PRO LYS GLU ILE GLY LYS LEU SEQRES 6 B 398 GLN ASN LEU GLN GLN LEU HIS LEU SER LYS ASN GLN LEU SEQRES 7 B 398 MSE ALA LEU PRO GLU GLU ILE GLY GLN LEU GLN ASN LEU SEQRES 8 B 398 GLN LYS LEU LYS LEU TYR GLU ASN GLN LEU THR ALA ILE SEQRES 9 B 398 PRO LYS GLU ILE GLY GLN LEU GLN ASN LEU GLN GLU LEU SEQRES 10 B 398 ASN LEU ALA HIS ASN GLN LEU ALA THR LEU PRO GLU ASP SEQRES 11 B 398 ILE GLU GLN LEU GLN ARG LEU GLN THR LEU TYR LEU GLY SEQRES 12 B 398 HIS ASN GLN PHE ASN SER ILE LEU LYS GLU ILE GLY GLN SEQRES 13 B 398 LEU GLN ASN LEU GLU SER LEU GLY LEU ASP HIS ASN GLN SEQRES 14 B 398 LEU ASN VAL LEU PRO LYS GLU ILE GLY GLN LEU ARG ASN SEQRES 15 B 398 LEU GLU SER LEU GLY LEU ASP HIS ASN GLN LEU ASN VAL SEQRES 16 B 398 LEU PRO LYS GLU ILE GLY GLN LEU GLN ASN LEU GLN ILE SEQRES 17 B 398 LEU HIS LEU ARG ASN ASN GLN LEU THR THR LEU PRO LYS SEQRES 18 B 398 GLU ILE GLY GLN LEU GLN ASN LEU GLN LYS LEU LEU LEU SEQRES 19 B 398 ASN LYS ASN LYS LEU THR THR LEU PRO LYS GLU ILE GLY SEQRES 20 B 398 GLN LEU GLN ASN LEU GLN LYS LEU LYS LEU TYR GLU ASN SEQRES 21 B 398 GLN LEU THR THR LEU PRO LYS GLU ILE GLY GLN LEU GLN SEQRES 22 B 398 ASN LEU GLN GLU LEU ASP LEU ASP GLY ASN GLN LEU THR SEQRES 23 B 398 THR LEU PRO GLU ASN ILE GLY GLN LEU GLN ARG LEU GLN SEQRES 24 B 398 THR LEU TYR LEU GLY ASN ASN GLN LEU ASN PHE LEU PRO SEQRES 25 B 398 LYS GLU ILE GLY GLN LEU ARG ASN LEU GLU SER LEU ASP SEQRES 26 B 398 LEU GLU HIS ASN GLN LEU ASN ALA LEU PRO LYS GLU ILE SEQRES 27 B 398 GLY LYS LEU GLN LYS LEU GLN THR LEU ASN LEU LYS TYR SEQRES 28 B 398 ASN GLN LEU ALA THR LEU PRO GLU GLU ILE LYS GLN LEU SEQRES 29 B 398 LYS ASN LEU LYS LYS LEU TYR LEU HIS ASN ASN PRO LEU SEQRES 30 B 398 PRO SER GLU LYS ILE ALA ARG ILE ARG LYS LEU LEU PRO SEQRES 31 B 398 GLN CYS ILE ILE TYR PHE GLU GLU MODRES 4U08 MSE A 108 MET MODIFIED RESIDUE MODRES 4U08 MSE B 108 MET MODIFIED RESIDUE HET MSE A 108 8 HET MSE B 108 8 HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET ZN A 505 1 HET CA A 506 1 HET SO4 B 501 5 HET ZN B 502 1 HET ZN B 503 1 HET ZN B 504 1 HET ZN B 505 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 ZN 9(ZN 2+) FORMUL 8 CA CA 2+ FORMUL 9 SO4 O4 S 2- FORMUL 14 HOH *488(H2 O) HELIX 1 AA1 ASN A 40 ASN A 47 1 8 HELIX 2 AA2 PRO A 65 LEU A 71 5 7 HELIX 3 AA3 PRO A 88 LEU A 94 5 7 HELIX 4 AA4 PRO A 111 LEU A 117 5 7 HELIX 5 AA5 PRO A 134 LEU A 140 5 7 HELIX 6 AA6 PRO A 157 LEU A 163 5 7 HELIX 7 AA7 LEU A 180 LEU A 186 5 7 HELIX 8 AA8 PRO A 203 LEU A 209 5 7 HELIX 9 AA9 PRO A 226 LEU A 232 5 7 HELIX 10 AB1 PRO A 249 LEU A 255 5 7 HELIX 11 AB2 PRO A 272 LEU A 278 5 7 HELIX 12 AB3 PRO A 295 LEU A 301 5 7 HELIX 13 AB4 PRO A 318 LEU A 324 5 7 HELIX 14 AB5 PRO A 341 LEU A 347 5 7 HELIX 15 AB6 PRO A 364 LEU A 370 5 7 HELIX 16 AB7 PRO A 387 LEU A 393 5 7 HELIX 17 AB8 PRO A 407 LEU A 418 1 12 HELIX 18 AB9 ASN B 40 ASN B 47 1 8 HELIX 19 AC1 PRO B 48 VAL B 51 5 4 HELIX 20 AC2 PRO B 65 LEU B 71 5 7 HELIX 21 AC3 PRO B 88 LEU B 94 5 7 HELIX 22 AC4 PRO B 111 LEU B 117 5 7 HELIX 23 AC5 PRO B 134 LEU B 140 5 7 HELIX 24 AC6 PRO B 157 LEU B 163 5 7 HELIX 25 AC7 LEU B 180 LEU B 186 5 7 HELIX 26 AC8 PRO B 203 LEU B 209 5 7 HELIX 27 AC9 PRO B 226 LEU B 232 5 7 HELIX 28 AD1 PRO B 249 LEU B 255 5 7 HELIX 29 AD2 PRO B 272 LEU B 278 5 7 HELIX 30 AD3 PRO B 295 LEU B 301 5 7 HELIX 31 AD4 PRO B 318 LEU B 324 5 7 HELIX 32 AD5 PRO B 341 LEU B 347 5 7 HELIX 33 AD6 PRO B 364 LEU B 370 5 7 HELIX 34 AD7 PRO B 387 LEU B 393 5 7 HELIX 35 AD8 PRO B 407 LEU B 418 1 12 SHEET 1 AA118 TYR A 37 TYR A 38 0 SHEET 2 AA118 ILE A 53 ASN A 55 1 O ASN A 55 N TYR A 38 SHEET 3 AA118 LEU A 76 ASN A 78 1 O ASN A 78 N LEU A 54 SHEET 4 AA118 GLN A 99 HIS A 101 1 O HIS A 101 N LEU A 77 SHEET 5 AA118 LYS A 122 LYS A 124 1 O LYS A 124 N LEU A 100 SHEET 6 AA118 GLU A 145 ASN A 147 1 O ASN A 147 N LEU A 123 SHEET 7 AA118 THR A 168 TYR A 170 1 O THR A 168 N LEU A 146 SHEET 8 AA118 SER A 191 GLY A 193 1 O GLY A 193 N LEU A 169 SHEET 9 AA118 SER A 214 GLY A 216 1 O GLY A 216 N LEU A 192 SHEET 10 AA118 ILE A 237 HIS A 239 1 O HIS A 239 N LEU A 215 SHEET 11 AA118 LYS A 260 LEU A 262 1 O LEU A 262 N LEU A 238 SHEET 12 AA118 LYS A 283 LYS A 285 1 O LYS A 283 N LEU A 261 SHEET 13 AA118 GLU A 306 ASP A 308 1 O ASP A 308 N LEU A 284 SHEET 14 AA118 THR A 329 TYR A 331 1 O TYR A 331 N LEU A 307 SHEET 15 AA118 SER A 352 ASP A 354 1 O ASP A 354 N LEU A 330 SHEET 16 AA118 THR A 375 ASN A 377 1 O ASN A 377 N LEU A 353 SHEET 17 AA118 LYS A 398 TYR A 400 1 O TYR A 400 N LEU A 376 SHEET 18 AA118 ILE A 422 TYR A 424 1 O TYR A 424 N LEU A 399 SHEET 1 AA218 TYR B 37 TYR B 38 0 SHEET 2 AA218 ILE B 53 ASN B 55 1 O ASN B 55 N TYR B 38 SHEET 3 AA218 LEU B 76 ASN B 78 1 O ASN B 78 N LEU B 54 SHEET 4 AA218 GLN B 99 HIS B 101 1 O HIS B 101 N LEU B 77 SHEET 5 AA218 LYS B 122 LYS B 124 1 O LYS B 124 N LEU B 100 SHEET 6 AA218 GLU B 145 ASN B 147 1 O ASN B 147 N LEU B 123 SHEET 7 AA218 THR B 168 TYR B 170 1 O THR B 168 N LEU B 146 SHEET 8 AA218 SER B 191 GLY B 193 1 O GLY B 193 N LEU B 169 SHEET 9 AA218 SER B 214 GLY B 216 1 O GLY B 216 N LEU B 192 SHEET 10 AA218 ILE B 237 HIS B 239 1 O HIS B 239 N LEU B 215 SHEET 11 AA218 LYS B 260 LEU B 262 1 O LEU B 262 N LEU B 238 SHEET 12 AA218 LYS B 283 LYS B 285 1 O LYS B 283 N LEU B 261 SHEET 13 AA218 GLU B 306 ASP B 308 1 O ASP B 308 N LEU B 284 SHEET 14 AA218 THR B 329 TYR B 331 1 O TYR B 331 N LEU B 307 SHEET 15 AA218 SER B 352 ASP B 354 1 O ASP B 354 N LEU B 330 SHEET 16 AA218 THR B 375 ASN B 377 1 O ASN B 377 N LEU B 353 SHEET 17 AA218 LYS B 398 TYR B 400 1 O TYR B 400 N LEU B 376 SHEET 18 AA218 ILE B 422 TYR B 424 1 O TYR B 424 N LEU B 399 LINK C LEU A 107 N MSE A 108 1555 1555 1.34 LINK C MSE A 108 N ALA A 109 1555 1555 1.35 LINK C LEU B 107 N MSE B 108 1555 1555 1.34 LINK C MSE B 108 N ALA B 109 1555 1555 1.34 LINK OE2 GLU A 158 ZN ZN B 503 1555 6454 1.93 LINK OE2 GLU A 190 CA CA A 506 1555 1555 2.60 LINK NE2 HIS A 196 ZN ZN A 505 1555 1555 2.07 LINK OE1 GLU A 213 CA CA A 506 1555 1555 2.85 LINK ND1 HIS A 219 ZN ZN A 505 1555 1555 1.90 LINK ND1 HIS A 239 ZN ZN A 504 1555 1555 2.24 LINK OD1 ASP A 310 ZN ZN A 503 1555 1555 2.30 LINK OD2 ASP A 310 ZN ZN A 503 1555 1555 2.66 LINK NE2 HIS A 357 ZN ZN A 501 1555 1555 1.98 LINK NE2 HIS A 402 ZN ZN A 502 1555 1555 2.22 LINK ZN ZN A 501 O HOH A 699 1555 1555 1.96 LINK ZN ZN A 501 NE2 HIS B 357 4555 1555 2.00 LINK ZN ZN A 501 O HOH B 759 1555 4555 2.21 LINK ZN ZN A 502 O HOH A 801 1555 1555 2.14 LINK ZN ZN A 502 OD1 ASP B 310 4555 1555 2.20 LINK ZN ZN A 503 NE2 HIS B 402 4555 1555 2.19 LINK ZN ZN A 503 O HOH B 789 1555 4555 2.48 LINK ZN ZN A 504 O HOH A 780 1555 1555 2.23 LINK ZN ZN A 505 O HOH A 793 1555 1555 2.21 LINK ZN ZN A 505 O HOH B 763 1555 4555 2.66 LINK CA CA A 506 O HOH A 764 1555 1555 2.63 LINK CA CA A 506 OE2 GLU B 190 1555 1555 2.53 LINK CA CA A 506 OE1 GLU B 213 1555 1555 3.19 LINK CA CA A 506 O HOH B 656 1555 1555 2.60 LINK O HOH A 729 ZN ZN B 504 1555 1555 2.40 LINK O HOH A 817 ZN ZN B 502 4555 1555 2.25 LINK OD2 ASP B 80 ZN ZN B 504 1555 1555 2.01 LINK ND1 HIS B 101 ZN ZN B 504 1555 1555 2.50 LINK OE1 GLU B 127 ZN ZN B 503 1555 1555 1.91 LINK ND1 HIS B 150 ZN ZN B 503 1555 1555 2.30 LINK NE2 HIS B 196 ZN ZN B 502 1555 1555 2.01 LINK ND1 HIS B 219 ZN ZN B 502 1555 1555 2.06 LINK ND1 HIS B 239 ZN ZN B 505 1555 1555 2.22 LINK S SO4 B 501 ZN ZN B 503 1555 1555 2.97 LINK O3 SO4 B 501 ZN ZN B 503 1555 1555 2.41 LINK ZN ZN B 502 O HOH B 782 1555 1555 2.20 LINK ZN ZN B 504 O HOH B 713 1555 1555 2.18 LINK ZN ZN B 505 O HOH B 753 1555 1555 2.24 SITE 1 AC1 4 HIS A 357 HOH A 699 HIS B 357 HOH B 759 SITE 1 AC2 3 HIS A 402 HOH A 801 ASP B 310 SITE 1 AC3 3 ASP A 310 HIS B 402 HOH B 789 SITE 1 AC4 4 ASP A 218 HIS A 239 HOH A 780 HOH A 850 SITE 1 AC5 4 HIS A 196 HIS A 219 HOH A 793 HOH B 763 SITE 1 AC6 6 GLU A 190 GLU A 213 HOH A 764 GLU B 190 SITE 2 AC6 6 GLU B 213 HOH B 656 SITE 1 AC7 6 GLU A 158 GLU A 161 LYS A 416 GLU B 127 SITE 2 AC7 6 ZN B 503 HOH B 728 SITE 1 AC8 4 HOH A 817 HIS B 196 HIS B 219 HOH B 782 SITE 1 AC9 4 GLU A 158 GLU B 127 HIS B 150 SO4 B 501 SITE 1 AD1 4 HOH A 729 ASP B 80 HIS B 101 HOH B 713 SITE 1 AD2 4 ASP B 218 HIS B 239 HOH B 753 HOH B 812 CRYST1 105.696 105.696 161.723 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009461 0.005462 0.000000 0.00000 SCALE2 0.000000 0.010925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006183 0.00000