HEADER TRANSFERASE 13-JUL-14 4U0O TITLE CRYSTAL STRUCTURE OF THERMOSYNECHOCOCCUS ELONGATUS LIPOYL SYNTHASE 2 TITLE 2 COMPLEXED WITH MTA AND DTT COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOYL SYNTHASE 2; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: LIP-SYN 2,LIPOATE SYNTHASE 2,LIPOIC ACID SYNTHASE 2,SULFUR COMPND 5 INSERTION PROTEIN LIPA2; COMPND 6 EC: 2.8.1.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: BP-1; SOURCE 5 GENE: LIPA2, TLL0574; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS RADICAL SAM, TIM BARREL, SULFOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.HARMER,M.J.HISCOX,P.C.DINIS,J.SANDY,P.L.ROACH REVDAT 5 20-DEC-23 4U0O 1 REMARK REVDAT 4 30-AUG-17 4U0O 1 REMARK SITE ATOM REVDAT 3 10-DEC-14 4U0O 1 REVDAT 2 05-NOV-14 4U0O 1 JRNL REVDAT 1 20-AUG-14 4U0O 0 JRNL AUTH J.E.HARMER,M.J.HISCOX,P.C.DINIS,S.J.FOX,A.ILIOPOULOS, JRNL AUTH 2 J.E.HUSSEY,J.SANDY,F.T.VAN BEEK,J.W.ESSEX,P.L.ROACH JRNL TITL STRUCTURES OF LIPOYL SYNTHASE REVEAL A COMPACT ACTIVE SITE JRNL TITL 2 FOR CONTROLLING SEQUENTIAL SULFUR INSERTION REACTIONS. JRNL REF BIOCHEM.J. V. 464 123 2014 JRNL REFN ESSN 1470-8728 JRNL PMID 25100160 JRNL DOI 10.1042/BJ20140895 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 44172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.0413 - 4.0315 0.99 2842 131 0.1763 0.2343 REMARK 3 2 4.0315 - 3.1999 0.98 2677 155 0.1860 0.2024 REMARK 3 3 3.1999 - 2.7954 0.99 2669 155 0.2023 0.2147 REMARK 3 4 2.7954 - 2.5398 0.98 2659 126 0.1979 0.2297 REMARK 3 5 2.5398 - 2.3578 0.99 2669 137 0.1950 0.2480 REMARK 3 6 2.3578 - 2.2188 0.97 2627 117 0.2052 0.2597 REMARK 3 7 2.2188 - 2.1076 0.99 2659 140 0.2078 0.2622 REMARK 3 8 2.1076 - 2.0159 0.95 2520 134 0.2210 0.2779 REMARK 3 9 2.0159 - 1.9383 0.97 2583 166 0.2157 0.2373 REMARK 3 10 1.9383 - 1.8714 0.93 2474 112 0.2458 0.2879 REMARK 3 11 1.8714 - 1.8129 0.98 2591 157 0.2523 0.3260 REMARK 3 12 1.8129 - 1.7610 0.98 2594 148 0.2796 0.2986 REMARK 3 13 1.7610 - 1.7147 0.97 2557 135 0.2946 0.3567 REMARK 3 14 1.7147 - 1.6728 0.99 2608 141 0.3168 0.3480 REMARK 3 15 1.6728 - 1.6348 0.98 2586 148 0.3476 0.3643 REMARK 3 16 1.6348 - 1.6000 0.98 2628 127 0.3674 0.4400 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2164 REMARK 3 ANGLE : 1.958 2959 REMARK 3 CHIRALITY : 0.085 339 REMARK 3 PLANARITY : 0.008 377 REMARK 3 DIHEDRAL : 14.224 782 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U0O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202543. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA, XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44264 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 64.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.60100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4U0P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BICINE PH 8.5, 15% PEG 20,000, REMARK 280 3% DEXTRAN SULFATE SODIUM SALT, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.30000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.30000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.44000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.40000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.44000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.40000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.30000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.44000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.40000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 29.30000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.44000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 81.40000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 ARG B 5 REMARK 465 PRO B 6 REMARK 465 LEU B 7 REMARK 465 LYS B 13 REMARK 465 PRO B 14 REMARK 465 LEU B 15 REMARK 465 GLY B 16 REMARK 465 LYS B 17 REMARK 465 ALA B 18 REMARK 465 SER B 19 REMARK 465 GLU B 20 REMARK 465 GLY B 289 REMARK 465 GLY B 290 REMARK 465 HIS B 291 REMARK 465 HIS B 292 REMARK 465 HIS B 293 REMARK 465 HIS B 294 REMARK 465 HIS B 295 REMARK 465 HIS B 296 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 12 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 25 CG CD OE1 NE2 REMARK 470 LEU B 27 CG CD1 CD2 REMARK 470 GLN B 30 CG CD OE1 NE2 REMARK 470 ARG B 41 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 52 CG CD CE NZ REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 HIS B 76 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 146 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 247 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 288 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 429 O HOH B 498 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 37 CA - CB - SG ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 37 -86.79 -52.42 REMARK 500 GLU B 38 61.63 -68.97 REMARK 500 GLU B 38 63.82 -68.97 REMARK 500 GLU B 39 -53.55 -155.91 REMARK 500 GLU B 39 -36.62 -165.83 REMARK 500 GLN B 114 27.37 49.99 REMARK 500 PRO B 140 -178.61 -68.36 REMARK 500 GLU B 171 -47.94 73.28 REMARK 500 ARG B 182 102.13 -49.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 581 DISTANCE = 6.16 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 302 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 37 SG REMARK 620 2 SF4 B 302 S1 125.1 REMARK 620 3 SF4 B 302 S3 114.8 98.1 REMARK 620 4 SF4 B 302 S4 117.9 100.4 94.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 302 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 42 SG REMARK 620 2 SF4 B 302 S1 129.8 REMARK 620 3 SF4 B 302 S2 109.0 96.6 REMARK 620 4 SF4 B 302 S4 119.0 102.4 90.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 302 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 48 SG REMARK 620 2 SF4 B 302 S2 123.4 REMARK 620 3 SF4 B 302 S3 124.2 102.9 REMARK 620 4 SF4 B 302 S4 115.3 87.7 93.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 63 SG REMARK 620 2 SF4 B 301 S1 119.4 REMARK 620 3 SF4 B 301 S2 114.7 98.0 REMARK 620 4 SF4 B 301 S3 121.6 105.0 92.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 67 SG REMARK 620 2 SF4 B 301 S1 110.7 REMARK 620 3 SF4 B 301 S2 126.1 97.4 REMARK 620 4 SF4 B 301 S4 115.3 102.0 101.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 70 SG REMARK 620 2 SF4 B 301 S1 114.0 REMARK 620 3 SF4 B 301 S3 127.2 105.1 REMARK 620 4 SF4 B 301 S4 106.8 100.5 99.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 302 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 283 OG REMARK 620 2 SF4 B 302 S1 112.9 REMARK 620 3 SF4 B 302 S2 122.1 98.1 REMARK 620 4 SF4 B 302 S3 114.9 101.3 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DTT B 303 S4 REMARK 620 2 SF4 B 301 S2 100.9 REMARK 620 3 SF4 B 301 S3 141.6 90.2 REMARK 620 4 SF4 B 301 S4 116.6 100.6 96.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTT B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MTA B 304 DBREF 4U0O B 1 290 UNP Q8DLC2 LIPA2_THEEB 1 290 SEQADV 4U0O HIS B 291 UNP Q8DLC2 EXPRESSION TAG SEQADV 4U0O HIS B 292 UNP Q8DLC2 EXPRESSION TAG SEQADV 4U0O HIS B 293 UNP Q8DLC2 EXPRESSION TAG SEQADV 4U0O HIS B 294 UNP Q8DLC2 EXPRESSION TAG SEQADV 4U0O HIS B 295 UNP Q8DLC2 EXPRESSION TAG SEQADV 4U0O HIS B 296 UNP Q8DLC2 EXPRESSION TAG SEQRES 1 B 296 MET ALA LEU SER ARG PRO LEU PRO SER TRP LEU ARG LYS SEQRES 2 B 296 PRO LEU GLY LYS ALA SER GLU ILE SER THR VAL GLN ARG SEQRES 3 B 296 LEU VAL ARG GLN TYR GLY ILE HIS THR ILE CYS GLU GLU SEQRES 4 B 296 GLY ARG CYS PRO ASN ARG GLY GLU CYS TYR GLY GLN LYS SEQRES 5 B 296 THR ALA THR PHE LEU LEU LEU GLY PRO THR CYS THR ARG SEQRES 6 B 296 ALA CYS ALA PHE CYS GLN VAL GLU LYS GLY HIS ALA PRO SEQRES 7 B 296 ALA ALA VAL ASP PRO GLU GLU PRO THR LYS ILE ALA ALA SEQRES 8 B 296 ALA VAL ALA THR LEU GLY LEU ARG TYR VAL VAL LEU THR SEQRES 9 B 296 SER VAL ALA ARG ASP ASP LEU PRO ASP GLN GLY ALA GLY SEQRES 10 B 296 GLN PHE VAL ALA THR MET ALA ALA ILE ARG GLN ARG CYS SEQRES 11 B 296 PRO GLY THR GLU ILE GLU VAL LEU SER PRO ASP PHE ARG SEQRES 12 B 296 MET ASP ARG GLY ARG LEU SER GLN ARG ASP CYS ILE ALA SEQRES 13 B 296 GLN ILE VAL ALA ALA GLN PRO ALA CYS TYR ASN HIS ASN SEQRES 14 B 296 LEU GLU THR VAL ARG ARG LEU GLN GLY PRO VAL ARG ARG SEQRES 15 B 296 GLY ALA THR TYR GLU SER SER LEU ARG VAL LEU ALA THR SEQRES 16 B 296 VAL LYS GLU LEU ASN PRO ASP ILE PRO THR LYS SER GLY SEQRES 17 B 296 LEU MET LEU GLY LEU GLY GLU THR GLU ALA GLU ILE ILE SEQRES 18 B 296 GLU THR LEU LYS ASP LEU ARG ARG VAL GLY CYS ASP ARG SEQRES 19 B 296 LEU THR LEU GLY GLN TYR LEU PRO PRO SER LEU SER HIS SEQRES 20 B 296 LEU PRO VAL VAL LYS TYR TRP THR PRO GLU GLU PHE ASN SEQRES 21 B 296 THR LEU GLY ASN ILE ALA ARG GLU LEU GLY PHE SER HIS SEQRES 22 B 296 VAL ARG SER GLY PRO LEU VAL ARG SER SER TYR HIS ALA SEQRES 23 B 296 ALA GLU GLY GLY HIS HIS HIS HIS HIS HIS HET SF4 B 301 8 HET SF4 B 302 8 HET DTT B 303 18 HET MTA B 304 35 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM MTA 5'-DEOXY-5'-METHYLTHIOADENOSINE HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 2 SF4 2(FE4 S4) FORMUL 4 DTT C4 H10 O2 S2 FORMUL 5 MTA C11 H15 N5 O3 S FORMUL 6 HOH *181(H2 O) HELIX 1 AA1 SER B 22 GLY B 32 1 11 HELIX 2 AA2 CYS B 48 GLN B 51 5 4 HELIX 3 AA3 GLU B 84 GLY B 97 1 14 HELIX 4 AA4 GLY B 115 CYS B 130 1 16 HELIX 5 AA5 SER B 150 ALA B 160 1 11 HELIX 6 AA6 VAL B 173 ARG B 175 5 3 HELIX 7 AA7 LEU B 176 ARG B 181 1 6 HELIX 8 AA8 THR B 185 ASN B 200 1 16 HELIX 9 AA9 THR B 216 VAL B 230 1 15 HELIX 10 AB1 THR B 255 GLY B 270 1 16 SHEET 1 AA1 7 THR B 53 LEU B 58 0 SHEET 2 AA1 7 TYR B 100 SER B 105 1 O THR B 104 N LEU B 58 SHEET 3 AA1 7 GLU B 134 LEU B 138 1 O LEU B 138 N LEU B 103 SHEET 4 AA1 7 CYS B 165 ASN B 167 1 O ASN B 167 N VAL B 137 SHEET 5 AA1 7 THR B 205 LEU B 211 1 O LYS B 206 N TYR B 166 SHEET 6 AA1 7 ARG B 234 GLN B 239 1 O GLY B 238 N LEU B 211 SHEET 7 AA1 7 SER B 272 SER B 276 1 O ARG B 275 N LEU B 237 LINK SG CYS B 37 FE2 SF4 B 302 1555 1555 2.22 LINK SG CYS B 42 FE3 SF4 B 302 1555 1555 2.17 LINK SG CYS B 48 FE1 SF4 B 302 1555 1555 2.24 LINK SG CYS B 63 FE4 SF4 B 301 1555 1555 2.34 LINK SG CYS B 67 FE3 SF4 B 301 1555 1555 2.29 LINK SG CYS B 70 FE2 SF4 B 301 1555 1555 2.34 LINK OG SER B 283 FE4 SF4 B 302 1555 1555 1.78 LINK FE1 SF4 B 301 S4 DTT B 303 1555 1555 2.57 CISPEP 1 GLY B 60 PRO B 61 0 5.36 SITE 1 AC1 5 CYS B 63 CYS B 67 PHE B 69 CYS B 70 SITE 2 AC1 5 DTT B 303 SITE 1 AC2 6 CYS B 37 CYS B 42 ASN B 44 CYS B 48 SITE 2 AC2 6 THR B 55 SER B 283 SITE 1 AC3 7 ILE B 36 THR B 104 SER B 105 SF4 B 301 SITE 2 AC3 7 MTA B 304 HOH B 450 HOH B 505 SITE 1 AC4 12 PHE B 69 ASN B 169 GLU B 171 MET B 210 SITE 2 AC4 12 GLN B 239 LEU B 241 ARG B 281 SER B 283 SITE 3 AC4 12 DTT B 303 HOH B 490 HOH B 483 HOH B 484 CRYST1 70.880 162.800 58.600 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014108 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006143 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017065 0.00000