HEADER TRANSPORT PROTEIN 24-JUL-14 4U4T TITLE STRUCTURE OF A NITRATE/NITRITE ANTIPORTER NARK IN NITRATE-BOUND TITLE 2 INWARD-OPEN STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRATE/NITRITE TRANSPORTER NARK; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NITRITE EXTRUSION PROTEIN 1, NITRITE FACILITATOR 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI STR. K12 SUBSTR. MG1655; SOURCE 3 ORGANISM_TAXID: 511145; SOURCE 4 STRAIN: MG1655; SOURCE 5 GENE: NARK, B1223, JW1214; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET VARIANT KEYWDS TRANSPORTER, NITRATE NITRITE PORTER FAMILY, MAJOR FACILITATOR KEYWDS 2 SUPERFAMILY, MEMBRANE TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.FUKUDA,H.TAKEDA,H.E.KATO,S.DOKI,K.ITO,A.D.MATURANA,R.ISHITANI, AUTHOR 2 O.NUREKI REVDAT 3 20-MAR-24 4U4T 1 REMARK REVDAT 2 29-JAN-20 4U4T 1 SOURCE REMARK REVDAT 1 15-JUL-15 4U4T 0 JRNL AUTH M.FUKUDA,H.TAKEDA,H.E.KATO,S.DOKI,K.ITO,A.D.MATURANA, JRNL AUTH 2 R.ISHITANI,O.NUREKI JRNL TITL STRUCTURAL BASIS FOR DYNAMIC MECHANISM OF NITRATE/NITRITE JRNL TITL 2 ANTIPORT BY NARK JRNL REF NAT COMMUN V. 6 7097 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25959928 JRNL DOI 10.1038/NCOMMS8097 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.3_1479) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3064 - 4.5895 1.00 2872 152 0.1963 0.2061 REMARK 3 2 4.5895 - 3.6435 1.00 2729 144 0.1909 0.2300 REMARK 3 3 3.6435 - 3.1831 1.00 2681 142 0.2144 0.2735 REMARK 3 4 3.1831 - 2.8922 1.00 2684 141 0.2396 0.2670 REMARK 3 5 2.8922 - 2.6849 1.00 2672 140 0.2484 0.2533 REMARK 3 6 2.6849 - 2.5266 1.00 2631 139 0.2625 0.3292 REMARK 3 7 2.5266 - 2.4001 1.00 2654 140 0.2911 0.3214 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3453 REMARK 3 ANGLE : 1.169 4674 REMARK 3 CHIRALITY : 0.047 531 REMARK 3 PLANARITY : 0.006 575 REMARK 3 DIHEDRAL : 14.699 1159 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4538 -3.1487 11.2076 REMARK 3 T TENSOR REMARK 3 T11: 0.5411 T22: 0.4960 REMARK 3 T33: 0.3811 T12: -0.0006 REMARK 3 T13: 0.0523 T23: 0.0533 REMARK 3 L TENSOR REMARK 3 L11: 0.2115 L22: 0.1390 REMARK 3 L33: 0.1566 L12: -0.1368 REMARK 3 L13: 0.0763 L23: 0.0360 REMARK 3 S TENSOR REMARK 3 S11: -0.1003 S12: 0.2319 S13: -0.0061 REMARK 3 S21: -0.3411 S22: -0.1984 S23: -0.1655 REMARK 3 S31: -0.1197 S32: 0.1457 S33: -0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2180 -8.3442 32.1149 REMARK 3 T TENSOR REMARK 3 T11: 0.2790 T22: 0.3499 REMARK 3 T33: 0.3468 T12: -0.0007 REMARK 3 T13: 0.0016 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.8202 L22: 1.6536 REMARK 3 L33: 1.0588 L12: 0.0440 REMARK 3 L13: -0.4606 L23: 0.1843 REMARK 3 S TENSOR REMARK 3 S11: 0.0449 S12: 0.0003 S13: 0.0963 REMARK 3 S21: -0.0744 S22: -0.0863 S23: 0.0021 REMARK 3 S31: -0.1233 S32: -0.0205 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 348 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8342 -32.9199 36.1812 REMARK 3 T TENSOR REMARK 3 T11: 0.5623 T22: 0.3945 REMARK 3 T33: 0.5395 T12: 0.0194 REMARK 3 T13: -0.0177 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 0.1956 L22: 0.2623 REMARK 3 L33: 0.0162 L12: -0.0049 REMARK 3 L13: -0.0398 L23: 0.0502 REMARK 3 S TENSOR REMARK 3 S11: -0.1797 S12: -0.2238 S13: -0.4014 REMARK 3 S21: 0.2637 S22: -0.0365 S23: -0.0915 REMARK 3 S31: 0.1290 S32: -0.1550 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 349 THROUGH 464 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8173 -25.7976 22.4110 REMARK 3 T TENSOR REMARK 3 T11: 0.5095 T22: 0.4444 REMARK 3 T33: 0.4350 T12: -0.0406 REMARK 3 T13: 0.0062 T23: -0.0631 REMARK 3 L TENSOR REMARK 3 L11: 0.7772 L22: 0.9702 REMARK 3 L33: 0.1326 L12: -0.1769 REMARK 3 L13: -0.1073 L23: 0.2273 REMARK 3 S TENSOR REMARK 3 S11: 0.1332 S12: 0.1380 S13: -0.1800 REMARK 3 S21: -0.3154 S22: -0.0656 S23: 0.1531 REMARK 3 S31: 0.4483 S32: -0.1017 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U4T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000202816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19921 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32-36% PEG 400, 10 MM ZINC ACETATE, 3% REMARK 280 D-SUCROSE, 100 MM MES-NAOH, PH 6.0, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.69700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.02000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.67900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.02000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.69700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.67900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLU A 8 REMARK 465 ARG A 9 REMARK 465 ALA A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 SER A 240 REMARK 465 LYS A 241 REMARK 465 ALA A 242 REMARK 465 SER A 243 REMARK 465 ILE A 244 REMARK 465 LYS A 245 REMARK 465 GLU A 246 REMARK 465 GLU A 465 REMARK 465 SER A 466 REMARK 465 SER A 467 REMARK 465 GLY A 468 REMARK 465 GLU A 469 REMARK 465 ASN A 470 REMARK 465 LEU A 471 REMARK 465 TYR A 472 REMARK 465 PHE A 473 REMARK 465 GLN A 474 REMARK 465 GLY A 475 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 161 CG CD OE1 NE2 REMARK 470 THR A 239 OG1 CG2 REMARK 470 GLN A 247 CG CD OE1 NE2 REMARK 470 LEU A 248 CG CD1 CD2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 ARG A 253 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 314 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 319 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 342 CG OD1 OD2 REMARK 470 GLN A 344 CG CD OE1 NE2 REMARK 470 MET A 349 CG SD CE REMARK 470 ARG A 378 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 379 CG CD CE NZ REMARK 470 LEU A 380 CG CD1 CD2 REMARK 470 ARG A 384 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 386 CG CD CE NZ REMARK 470 ARG A 397 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 459 CZ NH1 NH2 REMARK 470 LYS A 463 CG CD CE NZ REMARK 470 LEU A 464 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 29 -31.19 -138.62 REMARK 500 SER A 192 35.24 -97.64 REMARK 500 TYR A 211 75.81 -110.19 REMARK 500 THR A 266 -70.37 -99.69 REMARK 500 THR A 341 99.54 -162.03 REMARK 500 GLN A 344 19.75 -161.36 REMARK 500 HIS A 460 -54.14 -121.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA A 503 REMARK 610 OLA A 504 REMARK 610 OLC A 505 REMARK 610 OLC A 506 REMARK 610 OLC A 507 REMARK 610 OLC A 508 REMARK 610 OLC A 509 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 255 NE2 REMARK 620 2 HIS A 460 NE2 80.9 REMARK 620 3 HOH A 615 O 102.2 140.4 REMARK 620 4 HOH A 620 O 111.6 81.9 130.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 509 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4U4W RELATED DB: PDB REMARK 900 RELATED ID: 4U4V RELATED DB: PDB DBREF 4U4T A 1 463 UNP P10903 NARK_ECOLI 1 463 SEQADV 4U4T LEU A 464 UNP P10903 EXPRESSION TAG SEQADV 4U4T GLU A 465 UNP P10903 EXPRESSION TAG SEQADV 4U4T SER A 466 UNP P10903 EXPRESSION TAG SEQADV 4U4T SER A 467 UNP P10903 EXPRESSION TAG SEQADV 4U4T GLY A 468 UNP P10903 EXPRESSION TAG SEQADV 4U4T GLU A 469 UNP P10903 EXPRESSION TAG SEQADV 4U4T ASN A 470 UNP P10903 EXPRESSION TAG SEQADV 4U4T LEU A 471 UNP P10903 EXPRESSION TAG SEQADV 4U4T TYR A 472 UNP P10903 EXPRESSION TAG SEQADV 4U4T PHE A 473 UNP P10903 EXPRESSION TAG SEQADV 4U4T GLN A 474 UNP P10903 EXPRESSION TAG SEQADV 4U4T GLY A 475 UNP P10903 EXPRESSION TAG SEQRES 1 A 475 MET SER HIS SER SER ALA PRO GLU ARG ALA THR GLY ALA SEQRES 2 A 475 VAL ILE THR ASP TRP ARG PRO GLU ASP PRO ALA PHE TRP SEQRES 3 A 475 GLN GLN ARG GLY GLN ARG ILE ALA SER ARG ASN LEU TRP SEQRES 4 A 475 ILE SER VAL PRO CYS LEU LEU LEU ALA PHE CYS VAL TRP SEQRES 5 A 475 MET LEU PHE SER ALA VAL ALA VAL ASN LEU PRO LYS VAL SEQRES 6 A 475 GLY PHE ASN PHE THR THR ASP GLN LEU PHE MET LEU THR SEQRES 7 A 475 ALA LEU PRO SER VAL SER GLY ALA LEU LEU ARG VAL PRO SEQRES 8 A 475 TYR SER PHE MET VAL PRO ILE PHE GLY GLY ARG ARG TRP SEQRES 9 A 475 THR ALA PHE SER THR GLY ILE LEU ILE ILE PRO CYS VAL SEQRES 10 A 475 TRP LEU GLY PHE ALA VAL GLN ASP THR SER THR PRO TYR SEQRES 11 A 475 SER VAL PHE ILE ILE ILE SER LEU LEU CYS GLY PHE ALA SEQRES 12 A 475 GLY ALA ASN PHE ALA SER SER MET ALA ASN ILE SER PHE SEQRES 13 A 475 PHE PHE PRO LYS GLN LYS GLN GLY GLY ALA LEU GLY LEU SEQRES 14 A 475 ASN GLY GLY LEU GLY ASN MET GLY VAL SER VAL MET GLN SEQRES 15 A 475 LEU VAL ALA PRO LEU VAL VAL SER LEU SER ILE PHE ALA SEQRES 16 A 475 VAL PHE GLY SER GLN GLY VAL LYS GLN PRO ASP GLY THR SEQRES 17 A 475 GLU LEU TYR LEU ALA ASN ALA SER TRP ILE TRP VAL PRO SEQRES 18 A 475 PHE LEU ALA ILE PHE THR ILE ALA ALA TRP PHE GLY MET SEQRES 19 A 475 ASN ASP LEU ALA THR SER LYS ALA SER ILE LYS GLU GLN SEQRES 20 A 475 LEU PRO VAL LEU LYS ARG GLY HIS LEU TRP ILE MET SER SEQRES 21 A 475 LEU LEU TYR LEU ALA THR PHE GLY SER PHE ILE GLY PHE SEQRES 22 A 475 SER ALA GLY PHE ALA MET LEU SER LYS THR GLN PHE PRO SEQRES 23 A 475 ASP VAL GLN ILE LEU GLN TYR ALA PHE PHE GLY PRO PHE SEQRES 24 A 475 ILE GLY ALA LEU ALA ARG SER ALA GLY GLY ALA LEU SER SEQRES 25 A 475 ASP ARG LEU GLY GLY THR ARG VAL THR LEU VAL ASN PHE SEQRES 26 A 475 ILE LEU MET ALA ILE PHE SER GLY LEU LEU PHE LEU THR SEQRES 27 A 475 LEU PRO THR ASP GLY GLN GLY GLY SER PHE MET ALA PHE SEQRES 28 A 475 PHE ALA VAL PHE LEU ALA LEU PHE LEU THR ALA GLY LEU SEQRES 29 A 475 GLY SER GLY SER THR PHE GLN MET ILE SER VAL ILE PHE SEQRES 30 A 475 ARG LYS LEU THR MET ASP ARG VAL LYS ALA GLU GLY GLY SEQRES 31 A 475 SER ASP GLU ARG ALA MET ARG GLU ALA ALA THR ASP THR SEQRES 32 A 475 ALA ALA ALA LEU GLY PHE ILE SER ALA ILE GLY ALA ILE SEQRES 33 A 475 GLY GLY PHE PHE ILE PRO LYS ALA PHE GLY SER SER LEU SEQRES 34 A 475 ALA LEU THR GLY SER PRO VAL GLY ALA MET LYS VAL PHE SEQRES 35 A 475 LEU ILE PHE TYR ILE ALA CYS VAL VAL ILE THR TRP ALA SEQRES 36 A 475 VAL TYR GLY ARG HIS SER LYS LYS LEU GLU SER SER GLY SEQRES 37 A 475 GLU ASN LEU TYR PHE GLN GLY HET NO3 A 501 4 HET ZN A 502 1 HET OLA A 503 7 HET OLA A 504 5 HET OLC A 505 11 HET OLC A 506 12 HET OLC A 507 9 HET OLC A 508 12 HET OLC A 509 16 HETNAM NO3 NITRATE ION HETNAM ZN ZINC ION HETNAM OLA OLEIC ACID HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 NO3 N O3 1- FORMUL 3 ZN ZN 2+ FORMUL 4 OLA 2(C18 H34 O2) FORMUL 6 OLC 5(C21 H40 O4) FORMUL 11 HOH *31(H2 O) HELIX 1 AA1 ASP A 22 ARG A 29 1 8 HELIX 2 AA2 ARG A 29 MET A 53 1 25 HELIX 3 AA3 LEU A 54 LEU A 62 1 9 HELIX 4 AA4 PRO A 63 GLY A 66 5 4 HELIX 5 AA5 THR A 70 ILE A 111 1 42 HELIX 6 AA6 LEU A 112 VAL A 123 1 12 HELIX 7 AA7 PRO A 129 PHE A 142 1 14 HELIX 8 AA8 ALA A 145 PHE A 156 1 12 HELIX 9 AA9 PRO A 159 MET A 176 1 18 HELIX 10 AB1 MET A 176 VAL A 189 1 14 HELIX 11 AB2 PHE A 194 GLY A 198 5 5 HELIX 12 AB3 ALA A 213 ILE A 218 1 6 HELIX 13 AB4 ILE A 218 MET A 234 1 17 HELIX 14 AB5 GLN A 247 LYS A 252 5 6 HELIX 15 AB6 ARG A 253 PHE A 285 1 33 HELIX 16 AB7 GLN A 289 ALA A 294 5 6 HELIX 17 AB8 PHE A 295 GLY A 316 1 22 HELIX 18 AB9 GLY A 316 LEU A 339 1 24 HELIX 19 AC1 SER A 347 GLU A 388 1 42 HELIX 20 AC2 SER A 391 ILE A 416 1 26 HELIX 21 AC3 ILE A 416 GLY A 433 1 18 HELIX 22 AC4 PRO A 435 HIS A 460 1 26 HELIX 23 AC5 SER A 461 LEU A 464 5 4 SHEET 1 AA1 2 VAL A 202 LYS A 203 0 SHEET 2 AA1 2 GLU A 209 LEU A 210 -1 O LEU A 210 N VAL A 202 LINK NE2 HIS A 255 ZN ZN A 502 1555 1555 2.26 LINK NE2 HIS A 460 ZN ZN A 502 1555 1555 2.01 LINK ZN ZN A 502 O HOH A 615 1555 1555 2.40 LINK ZN ZN A 502 O HOH A 620 1555 1555 2.62 CISPEP 1 THR A 341 ASP A 342 0 -0.90 SITE 1 AC1 7 ARG A 89 PHE A 147 ASN A 175 TYR A 263 SITE 2 AC1 7 PHE A 267 ARG A 305 SER A 411 SITE 1 AC2 4 HIS A 255 HIS A 460 HOH A 615 HOH A 620 SITE 1 AC3 2 PHE A 197 TRP A 217 SITE 1 AC4 5 SER A 269 PHE A 420 PHE A 442 PHE A 445 SITE 2 AC4 5 TYR A 446 SITE 1 AC5 3 VAL A 117 TRP A 118 PHE A 121 SITE 1 AC6 1 SER A 190 SITE 1 AC7 1 MET A 76 SITE 1 AC8 4 MET A 76 PHE A 419 LYS A 423 SER A 427 SITE 1 AC9 2 TRP A 231 LYS A 440 CRYST1 35.394 109.358 126.040 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028253 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007934 0.00000