HEADER REPLICATION 01-AUG-14 4U87 TITLE CRYSTAL STRUCTURE OF THE BA-SOAKED C2 CRYSTAL FORM OF PMV158 TITLE 2 REPLICATION INITIATOR REPB (P3221 SPACE GROUP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICATION PROTEIN REPB; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: REPLICATION INITATOR REPB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; SOURCE 3 ORGANISM_TAXID: 1311; SOURCE 4 GENE: REPB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEM-T KEYWDS DNA REPLICATION INITIATOR, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR D.R.BOER,J.A.RUIZ MASO,G.DEL SOLAR,M.COLL REVDAT 3 20-DEC-23 4U87 1 REMARK REVDAT 2 24-FEB-16 4U87 1 JRNL REVDAT 1 26-AUG-15 4U87 0 JRNL AUTH D.R.BOER,J.A.RUIZ-MASO,M.RUEDA,M.V.PETOUKHOV,C.MACHON, JRNL AUTH 2 D.I.SVERGUN,M.OROZCO,G.DEL SOLAR,M.COLL JRNL TITL CONFORMATIONAL PLASTICITY OF REPB, THE REPLICATION INITIATOR JRNL TITL 2 PROTEIN OF PROMISCUOUS STREPTOCOCCAL PLASMID PMV158. JRNL REF SCI REP V. 6 20915 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26875695 JRNL DOI 10.1038/SREP20915 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7700 - 7.1690 1.00 2683 135 0.1760 0.1899 REMARK 3 2 7.1690 - 5.7360 1.00 2687 144 0.1908 0.2116 REMARK 3 3 5.7360 - 5.0245 1.00 2696 136 0.1783 0.2203 REMARK 3 4 5.0245 - 4.5713 1.00 2705 134 0.1915 0.2175 REMARK 3 5 4.5713 - 4.2471 1.00 2692 143 0.2005 0.2550 REMARK 3 6 4.2471 - 3.9989 1.00 2707 139 0.2481 0.2946 REMARK 3 7 3.9989 - 3.8001 1.00 2703 137 0.2946 0.3342 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.28 REMARK 3 B_SOL : 43.59 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 109.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.33890 REMARK 3 B22 (A**2) : 3.33890 REMARK 3 B33 (A**2) : -6.67770 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4933 REMARK 3 ANGLE : 1.168 6656 REMARK 3 CHIRALITY : 0.067 761 REMARK 3 PLANARITY : 0.003 824 REMARK 3 DIHEDRAL : 13.704 1818 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 3:134 OR RESID 301) REMARK 3 ORIGIN FOR THE GROUP (A): -47.8916 38.1846 -27.7513 REMARK 3 T TENSOR REMARK 3 T11: 1.1654 T22: 1.6784 REMARK 3 T33: 1.3137 T12: 0.1747 REMARK 3 T13: 0.1362 T23: -0.2224 REMARK 3 L TENSOR REMARK 3 L11: 0.2291 L22: 0.5102 REMARK 3 L33: 0.1928 L12: -0.1579 REMARK 3 L13: 0.0816 L23: 0.2418 REMARK 3 S TENSOR REMARK 3 S11: -0.1683 S12: -0.7377 S13: 0.5668 REMARK 3 S21: 0.6331 S22: -0.0370 S23: 0.5474 REMARK 3 S31: -0.6486 S32: -0.7309 S33: -0.0012 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND (RESID 3:134 OR RESID 301) REMARK 3 ORIGIN FOR THE GROUP (A): -51.5009 32.9344 -58.0791 REMARK 3 T TENSOR REMARK 3 T11: 0.4428 T22: 1.4956 REMARK 3 T33: 0.8439 T12: -0.0952 REMARK 3 T13: 0.0092 T23: 0.1196 REMARK 3 L TENSOR REMARK 3 L11: 0.5779 L22: 1.0586 REMARK 3 L33: 0.4249 L12: -0.2449 REMARK 3 L13: -0.2711 L23: -0.5134 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: 0.2570 S13: 0.0820 REMARK 3 S21: -0.0165 S22: 0.1370 S23: 0.2293 REMARK 3 S31: -0.1214 S32: -0.6081 S33: -0.0004 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C AND (RESID 3:134 OR RESID 301) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2903 40.3373 -81.4125 REMARK 3 T TENSOR REMARK 3 T11: 0.5457 T22: 1.1571 REMARK 3 T33: 0.6983 T12: 0.0102 REMARK 3 T13: -0.0192 T23: 0.2719 REMARK 3 L TENSOR REMARK 3 L11: 0.7777 L22: 1.8403 REMARK 3 L33: 0.5674 L12: -0.8851 REMARK 3 L13: 0.0528 L23: 0.1383 REMARK 3 S TENSOR REMARK 3 S11: 0.0580 S12: -0.1735 S13: 0.0154 REMARK 3 S21: -0.0566 S22: -0.4062 S23: 0.2567 REMARK 3 S31: -0.1622 S32: 0.8810 S33: 0.0010 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C AND (RESID 135:203) REMARK 3 SELECTION : CHAIN B AND (RESID 135:203) REMARK 3 ATOM PAIRS NUMBER : 560 REMARK 3 RMSD : 0.046 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN C AND (RESID 135:203) REMARK 3 SELECTION : CHAIN A AND (RESID 135:136 OR RESID REMARK 3 138:203) REMARK 3 ATOM PAIRS NUMBER : 551 REMARK 3 RMSD : 0.050 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C AND (RESID 4:129 OR RESID 301) REMARK 3 SELECTION : CHAIN B AND (RESID 4:129 OR RESID 301) REMARK 3 ATOM PAIRS NUMBER : 1027 REMARK 3 RMSD : 0.046 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN C AND (RESID 4:129 OR RESID 301) REMARK 3 SELECTION : CHAIN A AND (RESID 4:129 OR RESID 301) REMARK 3 ATOM PAIRS NUMBER : 946 REMARK 3 RMSD : 0.041 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000202947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 2.0702 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL (SI111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19844 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.540 REMARK 200 R MERGE (I) : 0.23600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.73100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3DKX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 8000, 100MM BACL2, 50MM TRIS REMARK 280 HCL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 164.10667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.05333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.05333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 164.10667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 HELICAL SYMMETRY WITH THE FOLLOWING PARAMETERS: REMARK 300 ROTATION PER SUBUNIT (TWIST) = 0.00 DEGREES REMARK 300 RISE PER SUBUNIT (HEIGHT) = 0.00 ANGSTROMS REMARK 300 IN ADDITION, THERE IS 2-FOLD CIRCULAR REMARK 300 SYMMETRY AROUND THE HELIX AXIS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -257.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -82.05333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 43 REMARK 465 SER A 44 REMARK 465 SER A 45 REMARK 465 ILE A 46 REMARK 465 LYS A 47 REMARK 465 GLY A 48 REMARK 465 GLN A 49 REMARK 465 LYS A 50 REMARK 465 TYR A 51 REMARK 465 LYS A 52 REMARK 465 GLY A 204 REMARK 465 THR A 205 REMARK 465 LYS A 206 REMARK 465 ASN A 207 REMARK 465 GLU A 208 REMARK 465 GLU A 209 REMARK 465 ARG A 210 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 204 REMARK 465 THR B 205 REMARK 465 LYS B 206 REMARK 465 ASN B 207 REMARK 465 GLU B 208 REMARK 465 GLU B 209 REMARK 465 ARG B 210 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLY C 204 REMARK 465 THR C 205 REMARK 465 LYS C 206 REMARK 465 ASN C 207 REMARK 465 GLU C 208 REMARK 465 GLU C 209 REMARK 465 ARG C 210 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 19 156.20 -44.89 REMARK 500 ILE A 61 79.97 -117.86 REMARK 500 ALA A 62 156.87 -41.79 REMARK 500 LYS A 111 53.36 34.18 REMARK 500 VAL A 136 -70.80 -41.59 REMARK 500 GLU A 137 -19.06 -42.89 REMARK 500 THR A 154 62.49 38.81 REMARK 500 PRO B 19 155.63 -46.15 REMARK 500 LYS B 43 109.68 -50.62 REMARK 500 LYS B 52 151.06 -49.52 REMARK 500 ALA B 62 155.92 -42.25 REMARK 500 LYS B 111 52.10 36.20 REMARK 500 PRO C 19 156.16 -45.89 REMARK 500 LYS C 52 154.55 -48.05 REMARK 500 ALA C 62 158.03 -43.50 REMARK 500 LYS C 111 52.61 34.91 REMARK 500 ARG C 130 4.04 -68.75 REMARK 500 THR C 154 62.89 37.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 306 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 42 OD2 REMARK 620 2 HIS B 57 NE2 138.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 302 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 129 O REMARK 620 2 VAL B 132 O 63.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA C 304 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 44 O REMARK 620 2 ILE C 46 O 58.2 REMARK 620 3 GLN C 49 O 56.4 60.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA C 302 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 129 O REMARK 620 2 VAL C 132 O 72.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA C 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA C 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN C 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DKX RELATED DB: PDB REMARK 900 RELATED ID: 3DKY RELATED DB: PDB DBREF 4U87 A 1 210 UNP P13921 REPB_STRAG 1 210 DBREF 4U87 B 1 210 UNP P13921 REPB_STRAG 1 210 DBREF 4U87 C 1 210 UNP P13921 REPB_STRAG 1 210 SEQRES 1 A 210 MET ALA LYS GLU LYS ALA ARG TYR PHE THR PHE LEU LEU SEQRES 2 A 210 TYR PRO GLU SER ILE PRO SER ASP TRP GLU LEU LYS LEU SEQRES 3 A 210 GLU THR LEU GLY VAL PRO MET ALA ILE SER PRO LEU HIS SEQRES 4 A 210 ASP LYS ASP LYS SER SER ILE LYS GLY GLN LYS TYR LYS SEQRES 5 A 210 LYS ALA HIS TYR HIS VAL LEU TYR ILE ALA LYS ASN PRO SEQRES 6 A 210 VAL THR ALA ASP SER VAL ARG LYS LYS ILE LYS LEU LEU SEQRES 7 A 210 LEU GLY GLU LYS SER LEU ALA MET VAL GLN VAL VAL LEU SEQRES 8 A 210 ASN VAL GLU ASN MET TYR LEU TYR LEU THR HIS GLU SER SEQRES 9 A 210 LYS ASP ALA ILE ALA LYS LYS LYS HIS VAL TYR ASP LYS SEQRES 10 A 210 ALA ASP ILE LYS LEU ILE ASN ASN PHE ASP ILE ASP ARG SEQRES 11 A 210 TYR VAL THR LEU ASP VAL GLU GLU LYS THR GLU LEU PHE SEQRES 12 A 210 ASN VAL VAL VAL SER LEU ILE ARG ALA TYR THR LEU GLN SEQRES 13 A 210 ASN ILE PHE ASP LEU TYR ASP PHE ILE ASP GLU ASN GLY SEQRES 14 A 210 GLU THR TYR GLY LEU THR ILE ASN LEU VAL ASN GLU VAL SEQRES 15 A 210 ILE ALA GLY LYS THR GLY PHE MET LYS LEU LEU PHE ASP SEQRES 16 A 210 GLY ALA TYR GLN ARG SER LYS ARG GLY THR LYS ASN GLU SEQRES 17 A 210 GLU ARG SEQRES 1 B 210 MET ALA LYS GLU LYS ALA ARG TYR PHE THR PHE LEU LEU SEQRES 2 B 210 TYR PRO GLU SER ILE PRO SER ASP TRP GLU LEU LYS LEU SEQRES 3 B 210 GLU THR LEU GLY VAL PRO MET ALA ILE SER PRO LEU HIS SEQRES 4 B 210 ASP LYS ASP LYS SER SER ILE LYS GLY GLN LYS TYR LYS SEQRES 5 B 210 LYS ALA HIS TYR HIS VAL LEU TYR ILE ALA LYS ASN PRO SEQRES 6 B 210 VAL THR ALA ASP SER VAL ARG LYS LYS ILE LYS LEU LEU SEQRES 7 B 210 LEU GLY GLU LYS SER LEU ALA MET VAL GLN VAL VAL LEU SEQRES 8 B 210 ASN VAL GLU ASN MET TYR LEU TYR LEU THR HIS GLU SER SEQRES 9 B 210 LYS ASP ALA ILE ALA LYS LYS LYS HIS VAL TYR ASP LYS SEQRES 10 B 210 ALA ASP ILE LYS LEU ILE ASN ASN PHE ASP ILE ASP ARG SEQRES 11 B 210 TYR VAL THR LEU ASP VAL GLU GLU LYS THR GLU LEU PHE SEQRES 12 B 210 ASN VAL VAL VAL SER LEU ILE ARG ALA TYR THR LEU GLN SEQRES 13 B 210 ASN ILE PHE ASP LEU TYR ASP PHE ILE ASP GLU ASN GLY SEQRES 14 B 210 GLU THR TYR GLY LEU THR ILE ASN LEU VAL ASN GLU VAL SEQRES 15 B 210 ILE ALA GLY LYS THR GLY PHE MET LYS LEU LEU PHE ASP SEQRES 16 B 210 GLY ALA TYR GLN ARG SER LYS ARG GLY THR LYS ASN GLU SEQRES 17 B 210 GLU ARG SEQRES 1 C 210 MET ALA LYS GLU LYS ALA ARG TYR PHE THR PHE LEU LEU SEQRES 2 C 210 TYR PRO GLU SER ILE PRO SER ASP TRP GLU LEU LYS LEU SEQRES 3 C 210 GLU THR LEU GLY VAL PRO MET ALA ILE SER PRO LEU HIS SEQRES 4 C 210 ASP LYS ASP LYS SER SER ILE LYS GLY GLN LYS TYR LYS SEQRES 5 C 210 LYS ALA HIS TYR HIS VAL LEU TYR ILE ALA LYS ASN PRO SEQRES 6 C 210 VAL THR ALA ASP SER VAL ARG LYS LYS ILE LYS LEU LEU SEQRES 7 C 210 LEU GLY GLU LYS SER LEU ALA MET VAL GLN VAL VAL LEU SEQRES 8 C 210 ASN VAL GLU ASN MET TYR LEU TYR LEU THR HIS GLU SER SEQRES 9 C 210 LYS ASP ALA ILE ALA LYS LYS LYS HIS VAL TYR ASP LYS SEQRES 10 C 210 ALA ASP ILE LYS LEU ILE ASN ASN PHE ASP ILE ASP ARG SEQRES 11 C 210 TYR VAL THR LEU ASP VAL GLU GLU LYS THR GLU LEU PHE SEQRES 12 C 210 ASN VAL VAL VAL SER LEU ILE ARG ALA TYR THR LEU GLN SEQRES 13 C 210 ASN ILE PHE ASP LEU TYR ASP PHE ILE ASP GLU ASN GLY SEQRES 14 C 210 GLU THR TYR GLY LEU THR ILE ASN LEU VAL ASN GLU VAL SEQRES 15 C 210 ILE ALA GLY LYS THR GLY PHE MET LYS LEU LEU PHE ASP SEQRES 16 C 210 GLY ALA TYR GLN ARG SER LYS ARG GLY THR LYS ASN GLU SEQRES 17 C 210 GLU ARG HET CL A 301 1 HET MN A 302 1 HET CL B 301 1 HET BA B 302 1 HET BA B 303 1 HET BA B 304 1 HET BA B 305 1 HET MN B 306 1 HET CL C 301 1 HET BA C 302 1 HET BA C 303 1 HET BA C 304 1 HET BA C 305 1 HET BA C 306 1 HET MN C 307 1 HETNAM CL CHLORIDE ION HETNAM MN MANGANESE (II) ION HETNAM BA BARIUM ION FORMUL 4 CL 3(CL 1-) FORMUL 5 MN 3(MN 2+) FORMUL 7 BA 9(BA 2+) HELIX 1 AA1 TYR A 14 ILE A 18 5 5 HELIX 2 AA2 ASP A 21 THR A 28 1 8 HELIX 3 AA3 THR A 67 GLY A 80 1 14 HELIX 4 AA4 ASN A 92 TYR A 99 1 8 HELIX 5 AA5 LEU A 100 HIS A 102 5 3 HELIX 6 AA6 SER A 104 LYS A 110 1 7 HELIX 7 AA7 ASP A 116 ILE A 120 5 5 HELIX 8 AA8 ASP A 127 TYR A 131 5 5 HELIX 9 AA9 ASP A 135 TYR A 153 1 19 HELIX 10 AB1 ASN A 157 GLY A 169 1 13 HELIX 11 AB2 GLU A 170 TYR A 172 5 3 HELIX 12 AB3 THR A 175 ILE A 183 1 9 HELIX 13 AB4 LYS A 186 ARG A 203 1 18 HELIX 14 AB5 TYR B 14 ILE B 18 5 5 HELIX 15 AB6 ASP B 21 THR B 28 1 8 HELIX 16 AB7 THR B 67 GLY B 80 1 14 HELIX 17 AB8 ASN B 92 TYR B 99 1 8 HELIX 18 AB9 LEU B 100 HIS B 102 5 3 HELIX 19 AC1 SER B 104 LYS B 110 1 7 HELIX 20 AC2 ASP B 116 ILE B 120 5 5 HELIX 21 AC3 ASP B 127 TYR B 131 5 5 HELIX 22 AC4 ASP B 135 TYR B 153 1 19 HELIX 23 AC5 ASN B 157 GLY B 169 1 13 HELIX 24 AC6 GLU B 170 TYR B 172 5 3 HELIX 25 AC7 THR B 175 ILE B 183 1 9 HELIX 26 AC8 LYS B 186 ARG B 203 1 18 HELIX 27 AC9 TYR C 14 ILE C 18 5 5 HELIX 28 AD1 ASP C 21 THR C 28 1 8 HELIX 29 AD2 THR C 67 GLY C 80 1 14 HELIX 30 AD3 ASN C 92 TYR C 99 1 8 HELIX 31 AD4 LEU C 100 HIS C 102 5 3 HELIX 32 AD5 SER C 104 LYS C 110 1 7 HELIX 33 AD6 ASP C 116 ILE C 120 5 5 HELIX 34 AD7 ASP C 127 VAL C 132 5 6 HELIX 35 AD8 ASP C 135 TYR C 153 1 19 HELIX 36 AD9 ASN C 157 GLY C 169 1 13 HELIX 37 AE1 GLU C 170 TYR C 172 5 3 HELIX 38 AE2 THR C 175 ILE C 183 1 9 HELIX 39 AE3 LYS C 186 ARG C 203 1 18 SHEET 1 AA1 5 VAL A 87 VAL A 89 0 SHEET 2 AA1 5 ALA A 6 LEU A 13 -1 N THR A 10 O GLN A 88 SHEET 3 AA1 5 TYR A 56 VAL A 66 -1 O TYR A 60 N PHE A 9 SHEET 4 AA1 5 MET A 33 ILE A 35 -1 N ALA A 34 O LEU A 59 SHEET 5 AA1 5 LYS A 121 ILE A 123 -1 O LYS A 121 N ILE A 35 SHEET 1 AA2 5 VAL B 87 VAL B 89 0 SHEET 2 AA2 5 ALA B 6 LEU B 13 -1 N THR B 10 O GLN B 88 SHEET 3 AA2 5 TYR B 56 VAL B 66 -1 O TYR B 60 N PHE B 9 SHEET 4 AA2 5 MET B 33 ILE B 35 -1 N ALA B 34 O LEU B 59 SHEET 5 AA2 5 LYS B 121 ILE B 123 -1 O LYS B 121 N ILE B 35 SHEET 1 AA3 5 VAL C 87 VAL C 89 0 SHEET 2 AA3 5 ALA C 6 LEU C 13 -1 N THR C 10 O GLN C 88 SHEET 3 AA3 5 TYR C 56 VAL C 66 -1 O TYR C 60 N PHE C 9 SHEET 4 AA3 5 MET C 33 ILE C 35 -1 N ALA C 34 O LEU C 59 SHEET 5 AA3 5 LYS C 121 ILE C 123 -1 O LYS C 121 N ILE C 35 LINK OD2 ASP A 42 MN MN A 302 1555 1555 2.75 LINK O GLU B 16 BA BA B 305 1555 1555 3.19 LINK OD2 ASP B 42 MN MN B 306 1555 1555 2.78 LINK NE2 HIS B 57 MN MN B 306 1555 1555 2.79 LINK O ASP B 129 BA BA B 302 1555 1555 2.94 LINK O VAL B 132 BA BA B 302 1555 1555 3.31 LINK O ASP B 166 BA BA B 304 1555 1555 3.35 LINK O GLU C 16 BA BA C 306 1555 1555 3.48 LINK OD2 ASP C 42 MN MN C 307 1555 1555 2.72 LINK O SER C 44 BA BA C 304 1555 1555 3.38 LINK O ILE C 46 BA BA C 304 1555 1555 3.46 LINK O GLN C 49 BA BA C 304 1555 1555 3.05 LINK O ASP C 129 BA BA C 302 1555 1555 3.17 LINK O VAL C 132 BA BA C 302 1555 1555 3.11 LINK O THR C 133 BA BA C 303 1555 1555 3.40 LINK O ASP C 166 BA BA C 305 1555 1555 3.23 SITE 1 AC1 2 GLY A 185 LYS B 186 SITE 1 AC2 5 HIS A 39 ASP A 42 HIS A 55 HIS A 57 SITE 2 AC2 5 HIS A 102 SITE 1 AC3 2 GLY B 185 LYS C 186 SITE 1 AC4 3 ASP B 129 VAL B 132 GLU B 181 SITE 1 AC5 1 ASP B 166 SITE 1 AC6 2 GLU B 16 LYS C 121 SITE 1 AC7 5 HIS B 39 ASP B 42 HIS B 55 HIS B 57 SITE 2 AC7 5 HIS B 102 SITE 1 AC8 2 LYS A 186 GLY C 185 SITE 1 AC9 2 ASP C 129 VAL C 132 SITE 1 AD1 3 LYS B 63 THR C 133 GLU C 138 SITE 1 AD2 3 SER C 44 ILE C 46 GLN C 49 SITE 1 AD3 1 ASP C 166 SITE 1 AD4 1 GLU C 16 SITE 1 AD5 5 HIS C 39 ASP C 42 HIS C 55 HIS C 57 SITE 2 AD5 5 HIS C 102 CRYST1 85.800 85.800 246.160 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011655 0.006729 0.000000 0.00000 SCALE2 0.000000 0.013458 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004062 0.00000