HEADER TRANSFER PROTEIN / STRUCTURAL PROTEIN 05-AUG-14 4U91 TITLE GEPHE IN COMPLEX WITH PARA-PHENYL CROSSLINKED GLYCINE RECEPTOR BETA TITLE 2 SUBUNIT DERIVED DIMERIC PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GEPHYRIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GEPHYRIN E DOMAIN, UNP RESIDUES 344-762; COMPND 5 SYNONYM: PUTATIVE GLYCINE RECEPTOR-TUBULIN LINKER PROTEIN; COMPND 6 EC: 2.7.7.75,2.10.1.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GLYCINE RECEPTOR SUBUNIT BETA; COMPND 10 CHAIN: B, E; COMPND 11 SYNONYM: GLYCINE RECEPTOR 58 KDA SUBUNIT; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GPHN, GPH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 11 ORGANISM_COMMON: RAT; SOURCE 12 ORGANISM_TAXID: 10116 KEYWDS TRANSFERASE, SCAFFOLDING PROTEIN, INHIBITORY SYNAPSE, GABA TYPE A KEYWDS 2 RECEPTOR, TRANSFER PROTEIN - STRUCTURAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR V.B.KASARAGOD,H.M.MARIC,H.SCHINDELIN REVDAT 3 20-DEC-23 4U91 1 REMARK ATOM REVDAT 2 11-FEB-15 4U91 1 JRNL REVDAT 1 10-DEC-14 4U91 0 JRNL AUTH H.M.MARIC,V.B.KASARAGOD,L.HAUGAARD-KEDSTROM,T.J.HAUSRAT, JRNL AUTH 2 M.KNEUSSEL,H.SCHINDELIN,K.STRMGAARD JRNL TITL DESIGN AND SYNTHESIS OF HIGH-AFFINITY DIMERIC INHIBITORS JRNL TITL 2 TARGETING THE INTERACTIONS BETWEEN GEPHYRIN AND INHIBITORY JRNL TITL 3 NEUROTRANSMITTER RECEPTORS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 54 490 2015 JRNL REFN ESSN 1521-3773 JRNL PMID 25413248 JRNL DOI 10.1002/ANIE.201409043 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 31672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1688 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2281 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3330 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 288 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.705 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3471 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3398 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4722 ; 1.706 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7839 ; 0.856 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 447 ; 6.778 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;37.715 ;24.043 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 590 ;16.435 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;19.899 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 547 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3899 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 718 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1765 ; 3.428 ; 3.857 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1763 ; 3.429 ; 3.853 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2204 ; 5.089 ; 5.739 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2205 ; 5.088 ; 5.741 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1706 ; 4.007 ; 4.426 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1706 ; 4.007 ; 4.426 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2514 ; 6.040 ; 6.450 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 14156 ; 9.470 ;36.353 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 14157 ; 9.470 ;36.355 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 319 A 736 REMARK 3 ORIGIN FOR THE GROUP (A): 37.8960 20.0240 227.7484 REMARK 3 T TENSOR REMARK 3 T11: 0.0524 T22: 0.0704 REMARK 3 T33: 0.0645 T12: 0.0180 REMARK 3 T13: 0.0026 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.1488 L22: 0.0987 REMARK 3 L33: 0.3421 L12: 0.1040 REMARK 3 L13: 0.1447 L23: 0.0426 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: -0.0220 S13: 0.0241 REMARK 3 S21: -0.0102 S22: -0.0169 S23: 0.0169 REMARK 3 S31: -0.0171 S32: -0.0397 S33: 0.0108 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 398 B 408 REMARK 3 ORIGIN FOR THE GROUP (A): 31.7953 41.0266 215.7040 REMARK 3 T TENSOR REMARK 3 T11: 0.2243 T22: 0.0423 REMARK 3 T33: 0.1217 T12: 0.0551 REMARK 3 T13: -0.0528 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 8.3172 L22: 9.1096 REMARK 3 L33: 1.8836 L12: 3.7515 REMARK 3 L13: -3.9569 L23: -1.8706 REMARK 3 S TENSOR REMARK 3 S11: 0.4963 S12: 0.1145 S13: 0.5551 REMARK 3 S21: 0.6237 S22: -0.2348 S23: -0.1203 REMARK 3 S31: -0.2436 S32: -0.0530 S33: -0.2615 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 398 E 408 REMARK 3 ORIGIN FOR THE GROUP (A): 55.6446 58.2363 215.5575 REMARK 3 T TENSOR REMARK 3 T11: 0.1424 T22: 0.0576 REMARK 3 T33: 0.0843 T12: 0.0384 REMARK 3 T13: 0.0423 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 2.2937 L22: 7.7928 REMARK 3 L33: 1.1052 L12: 3.1595 REMARK 3 L13: 1.5894 L23: 2.2688 REMARK 3 S TENSOR REMARK 3 S11: 0.1690 S12: 0.1172 S13: -0.0144 REMARK 3 S21: 0.4060 S22: -0.1636 S23: 0.1516 REMARK 3 S31: 0.1360 S32: 0.0801 S33: -0.0054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4U91 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203007. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33407 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 56.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.57600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2FU3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 0.1M SODIUM REMARK 280 ACETATE PH 4.5, 20-30% 2-METHYL 2,4-PENTANEDIOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.72000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.60500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.24500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.72000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.60500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.24500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.72000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.60500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.24500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.72000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.60500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.24500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 950 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1105 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1125 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 318 REMARK 465 GLN A 695 REMARK 465 MET A 696 REMARK 465 SER A 697 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1045 O HOH B 501 1.35 REMARK 500 C TYR A 581 NE2 GLN A 584 1.59 REMARK 500 O TYR A 581 NE2 GLN A 584 1.68 REMARK 500 NH1 ARG A 653 O HOH A 901 1.91 REMARK 500 OG SER A 575 OD2 ASP A 580 1.96 REMARK 500 CA TYR A 581 NE2 GLN A 584 1.99 REMARK 500 O HOH A 1022 O HOH A 1118 2.00 REMARK 500 O SER A 436 N GLY A 439 2.05 REMARK 500 OG SER A 571 O HOH A 902 2.10 REMARK 500 OD1 ASP A 524 O HOH A 903 2.13 REMARK 500 O HOH A 1069 O HOH A 1089 2.13 REMARK 500 O HOH A 1072 O HOH A 1151 2.14 REMARK 500 OD2 ASP A 382 N GLY A 406 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1182 O HOH A 1182 2655 1.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 736 CA - CB - CG ANGL. DEV. = 18.5 DEGREES REMARK 500 PRO E 405 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 433 -69.71 -94.93 REMARK 500 GLU A 435 -163.12 -109.77 REMARK 500 ARG E 406 -142.60 59.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1182 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A1183 DISTANCE = 6.90 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4U90 RELATED DB: PDB REMARK 900 RELATED ID: 4PD0 RELATED DB: PDB REMARK 900 RELATED ID: 4PD1 RELATED DB: PDB REMARK 900 RELATED ID: 4TK1 RELATED DB: PDB REMARK 900 RELATED ID: 4TK2 RELATED DB: PDB REMARK 900 RELATED ID: 4TK3 RELATED DB: PDB REMARK 900 RELATED ID: 4TK4 RELATED DB: PDB DBREF 4U91 A 318 736 UNP Q03555 GEPH_RAT 344 762 DBREF 4U91 B 398 408 PDB 4U91 4U91 398 408 DBREF 4U91 E 398 408 PDB 4U91 4U91 398 408 SEQRES 1 A 419 MET SER PRO PHE PRO LEU THR SER MET ASP LYS ALA PHE SEQRES 2 A 419 ILE THR VAL LEU GLU MET THR PRO VAL LEU GLY THR GLU SEQRES 3 A 419 ILE ILE ASN TYR ARG ASP GLY MET GLY ARG VAL LEU ALA SEQRES 4 A 419 GLN ASP VAL TYR ALA LYS ASP ASN LEU PRO PRO PHE PRO SEQRES 5 A 419 ALA SER VAL LYS ASP GLY TYR ALA VAL ARG ALA ALA ASP SEQRES 6 A 419 GLY PRO GLY ASP ARG PHE ILE ILE GLY GLU SER GLN ALA SEQRES 7 A 419 GLY GLU GLN PRO THR GLN THR VAL MET PRO GLY GLN VAL SEQRES 8 A 419 MET ARG VAL THR THR GLY ALA PRO ILE PRO CYS GLY ALA SEQRES 9 A 419 ASP ALA VAL VAL GLN VAL GLU ASP THR GLU LEU ILE ARG SEQRES 10 A 419 GLU SER ASP ASP GLY THR GLU GLU LEU GLU VAL ARG ILE SEQRES 11 A 419 LEU VAL GLN ALA ARG PRO GLY GLN ASP ILE ARG PRO ILE SEQRES 12 A 419 GLY HIS ASP ILE LYS ARG GLY GLU CYS VAL LEU ALA LYS SEQRES 13 A 419 GLY THR HIS MET GLY PRO SER GLU ILE GLY LEU LEU ALA SEQRES 14 A 419 THR VAL GLY VAL THR GLU VAL GLU VAL ASN LYS PHE PRO SEQRES 15 A 419 VAL VAL ALA VAL MET SER THR GLY ASN GLU LEU LEU ASN SEQRES 16 A 419 PRO GLU ASP ASP LEU LEU PRO GLY LYS ILE ARG ASP SER SEQRES 17 A 419 ASN ARG SER THR LEU LEU ALA THR ILE GLN GLU HIS GLY SEQRES 18 A 419 TYR PRO THR ILE ASN LEU GLY ILE VAL GLY ASP ASN PRO SEQRES 19 A 419 ASP ASP LEU LEU ASN ALA LEU ASN GLU GLY ILE SER ARG SEQRES 20 A 419 ALA ASP VAL ILE ILE THR SER GLY GLY VAL SER MET GLY SEQRES 21 A 419 GLU LYS ASP TYR LEU LYS GLN VAL LEU ASP ILE ASP LEU SEQRES 22 A 419 HIS ALA GLN ILE HIS PHE GLY ARG VAL PHE MET LYS PRO SEQRES 23 A 419 GLY LEU PRO THR THR PHE ALA THR LEU ASP ILE ASP GLY SEQRES 24 A 419 VAL ARG LYS ILE ILE PHE ALA LEU PRO GLY ASN PRO VAL SEQRES 25 A 419 SER ALA VAL VAL THR CYS ASN LEU PHE VAL VAL PRO ALA SEQRES 26 A 419 LEU ARG LYS MET GLN GLY ILE LEU ASP PRO ARG PRO THR SEQRES 27 A 419 ILE ILE LYS ALA ARG LEU SER CYS ASP VAL LYS LEU ASP SEQRES 28 A 419 PRO ARG PRO GLU TYR HIS ARG CYS ILE LEU THR TRP HIS SEQRES 29 A 419 HIS GLN GLU PRO LEU PRO TRP ALA GLN SER THR GLY ASN SEQRES 30 A 419 GLN MET SER SER ARG LEU MET SER MET ARG SER ALA ASN SEQRES 31 A 419 GLY LEU LEU MET LEU PRO PRO LYS THR GLU GLN TYR VAL SEQRES 32 A 419 GLU LEU HIS LYS GLY GLU VAL VAL ASP VAL MET VAL ILE SEQRES 33 A 419 GLY ARG LEU SEQRES 1 B 11 PHE SER ILE VAL GLY SER LEU PRO ARG ASP CYS SEQRES 1 E 11 PHE SER ILE VAL GLY SER LEU PRO ARG ASP CYS HET ACT A 801 4 HET EDO A 802 4 HET CA A 803 1 HET 3F7 E 501 20 HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETNAM 3F7 1,1'-BENZENE-1,4-DIYLBIS(1H-PYRROLE-2,5-DIONE) HETSYN EDO ETHYLENE GLYCOL FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 EDO C2 H6 O2 FORMUL 6 CA CA 2+ FORMUL 7 3F7 C14 H8 N2 O4 FORMUL 8 HOH *288(H2 O) HELIX 1 AA1 SER A 325 THR A 337 1 13 HELIX 2 AA2 ARG A 348 GLY A 350 5 3 HELIX 3 AA3 ALA A 380 GLY A 383 5 4 HELIX 4 AA4 GLY A 478 GLY A 489 1 12 HELIX 5 AA5 SER A 525 HIS A 537 1 13 HELIX 6 AA6 ASN A 550 ALA A 565 1 16 HELIX 7 AA7 TYR A 581 ASP A 589 1 9 HELIX 8 AA8 ASN A 627 GLN A 647 1 21 HELIX 9 AA9 ARG A 699 MET A 703 1 5 SHEET 1 AA1 2 LEU A 323 THR A 324 0 SHEET 2 AA1 2 ARG A 598 VAL A 599 1 O ARG A 598 N THR A 324 SHEET 1 AA2 2 THR A 342 ASN A 346 0 SHEET 2 AA2 2 GLU A 492 ASN A 496 -1 O VAL A 495 N GLU A 343 SHEET 1 AA3 2 VAL A 359 TYR A 360 0 SHEET 2 AA3 2 CYS A 469 LEU A 471 -1 O LEU A 471 N VAL A 359 SHEET 1 AA4 2 ALA A 370 SER A 371 0 SHEET 2 AA4 2 ILE A 457 ARG A 458 -1 O ARG A 458 N ALA A 370 SHEET 1 AA5 6 ALA A 423 GLN A 426 0 SHEET 2 AA5 6 GLY A 375 VAL A 378 -1 N VAL A 378 O ALA A 423 SHEET 3 AA5 6 GLN A 407 VAL A 411 -1 O MET A 409 N ALA A 377 SHEET 4 AA5 6 GLY A 385 SER A 393 1 N SER A 393 O ARG A 410 SHEET 5 AA5 6 GLU A 444 ILE A 447 -1 O ILE A 447 N GLY A 385 SHEET 6 AA5 6 THR A 430 ARG A 434 -1 N GLU A 431 O ARG A 446 SHEET 1 AA6 6 THR A 541 VAL A 547 0 SHEET 2 AA6 6 VAL A 501 THR A 506 1 N SER A 505 O VAL A 547 SHEET 3 AA6 6 VAL A 567 SER A 571 1 O ILE A 569 N ALA A 502 SHEET 4 AA6 6 VAL A 617 LEU A 624 1 O LEU A 624 N THR A 570 SHEET 5 AA6 6 THR A 608 ILE A 614 -1 N THR A 608 O ALA A 623 SHEET 6 AA6 6 GLN A 593 PHE A 596 -1 N GLN A 593 O THR A 611 SHEET 1 AA7 2 LEU A 510 LEU A 511 0 SHEET 2 AA7 2 ILE A 522 ARG A 523 1 O ILE A 522 N LEU A 511 SHEET 1 AA8 6 ILE A 656 LEU A 661 0 SHEET 2 AA8 6 TRP A 688 SER A 691 1 O ALA A 689 N ARG A 660 SHEET 3 AA8 6 GLU A 672 THR A 679 -1 N THR A 679 O TRP A 688 SHEET 4 AA8 6 GLY A 708 LEU A 712 -1 O LEU A 710 N HIS A 674 SHEET 5 AA8 6 VAL A 727 VAL A 732 -1 O MET A 731 N LEU A 709 SHEET 6 AA8 6 ILE A 656 LEU A 661 -1 N ALA A 659 O VAL A 728 SHEET 1 AA9 2 VAL A 665 LYS A 666 0 SHEET 2 AA9 2 GLU A 721 LEU A 722 -1 O LEU A 722 N VAL A 665 CISPEP 1 SER A 319 PRO A 320 0 -4.15 CISPEP 2 LEU A 365 PRO A 366 0 -13.51 CISPEP 3 LYS A 602 PRO A 603 0 -13.23 CRYST1 87.440 99.210 112.490 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011436 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010080 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008890 0.00000