data_4U92 # _entry.id 4U92 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4U92 pdb_00004u92 10.2210/pdb4u92/pdb WWPDB D_1000203021 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-11-26 2 'Structure model' 1 1 2014-12-10 3 'Structure model' 1 2 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 3 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' citation 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_database_status 6 3 'Structure model' pdbx_entity_src_syn 7 3 'Structure model' pdbx_struct_conn_angle 8 3 'Structure model' pdbx_struct_oper_list 9 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_id_CSD' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_database_status.pdb_format_compatible' 5 3 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 25 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 26 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 27 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 28 3 'Structure model' '_pdbx_struct_conn_angle.value' 29 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 30 3 'Structure model' '_struct_conn.pdbx_dist_value' 31 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 32 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 33 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 34 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 35 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 36 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 37 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 38 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 39 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 40 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 41 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 42 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 43 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 44 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 45 3 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4U92 _pdbx_database_status.recvd_initial_deposition_date 2014-08-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Paukstelis, P.J.' 1 'Zhang, D.' 2 'Huang, T.' 3 'Lukeman, P.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 42 _citation.language ? _citation.page_first 13422 _citation.page_last 13429 _citation.title 'Crystal structure of a DNA/Ba2+ G-quadruplex containing a water-mediated C-tetrad.' _citation.year 2014 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gku1122 _citation.pdbx_database_id_PubMed 25389267 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, D.' 1 ? primary 'Huang, T.' 2 ? primary 'Lukeman, P.S.' 3 ? primary 'Paukstelis, P.J.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*AP*KP*GP*CP*GP*TP*GP*G)-3') ; 2793.873 2 ? ? ? '3-cyanovinylcarabazole nucleotide at position 4' 2 non-polymer syn 'BARIUM ION' 137.327 6 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 water nat water 18.015 61 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DA)(CNV)(DG)(DC)(DG)(DT)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCAXGCGTGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BARIUM ION' BA 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DA n 1 4 CNV n 1 5 DG n 1 6 DC n 1 7 DG n 1 8 DT n 1 9 DG n 1 10 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 CNV non-polymer . propanenitrile ? 'C3 H5 N' 55.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 ? ? ? A . n A 1 2 DC 2 2 ? ? ? A . n A 1 3 DA 3 3 ? ? ? A . n A 1 4 CNV 4 4 ? ? ? A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n B 1 1 DC 1 1 ? ? ? B . n B 1 2 DC 2 2 ? ? ? B . n B 1 3 DA 3 3 ? ? ? B . n B 1 4 CNV 4 4 ? ? ? B . n B 1 5 DG 5 5 5 DG DG B . n B 1 6 DC 6 6 6 DC DC B . n B 1 7 DG 7 7 7 DG DG B . n B 1 8 DT 8 8 8 DT DT B . n B 1 9 DG 9 9 9 DG DG B . n B 1 10 DG 10 10 10 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BA 1 101 3 BA BA A . D 2 BA 1 102 4 BA BA A . E 2 BA 1 103 5 BA BA A . F 3 MG 1 104 1 MG MG A . G 3 MG 1 105 2 MG MG A . H 2 BA 1 101 1 BA BA B . I 2 BA 1 102 2 BA BA B . J 2 BA 1 103 6 BA BA B . K 4 HOH 1 201 10 HOH HOH A . K 4 HOH 2 202 28 HOH HOH A . K 4 HOH 3 203 9 HOH HOH A . K 4 HOH 4 204 4 HOH HOH A . K 4 HOH 5 205 53 HOH HOH A . K 4 HOH 6 206 37 HOH HOH A . K 4 HOH 7 207 18 HOH HOH A . K 4 HOH 8 208 52 HOH HOH A . K 4 HOH 9 209 16 HOH HOH A . K 4 HOH 10 210 21 HOH HOH A . K 4 HOH 11 211 15 HOH HOH A . K 4 HOH 12 212 5 HOH HOH A . K 4 HOH 13 213 32 HOH HOH A . K 4 HOH 14 214 67 HOH HOH A . K 4 HOH 15 215 17 HOH HOH A . K 4 HOH 16 216 62 HOH HOH A . K 4 HOH 17 217 88 HOH HOH A . K 4 HOH 18 218 55 HOH HOH A . K 4 HOH 19 219 45 HOH HOH A . K 4 HOH 20 220 46 HOH HOH A . K 4 HOH 21 221 29 HOH HOH A . K 4 HOH 22 222 8 HOH HOH A . K 4 HOH 23 223 35 HOH HOH A . K 4 HOH 24 224 33 HOH HOH A . K 4 HOH 25 225 12 HOH HOH A . K 4 HOH 26 226 31 HOH HOH A . K 4 HOH 27 227 22 HOH HOH A . K 4 HOH 28 228 24 HOH HOH A . K 4 HOH 29 229 41 HOH HOH A . K 4 HOH 30 230 99 HOH HOH A . L 4 HOH 1 201 30 HOH HOH B . L 4 HOH 2 202 1 HOH HOH B . L 4 HOH 3 203 26 HOH HOH B . L 4 HOH 4 204 3 HOH HOH B . L 4 HOH 5 205 20 HOH HOH B . L 4 HOH 6 206 11 HOH HOH B . L 4 HOH 7 207 23 HOH HOH B . L 4 HOH 8 208 43 HOH HOH B . L 4 HOH 9 209 25 HOH HOH B . L 4 HOH 10 210 19 HOH HOH B . L 4 HOH 11 211 13 HOH HOH B . L 4 HOH 12 212 47 HOH HOH B . L 4 HOH 13 213 2 HOH HOH B . L 4 HOH 14 214 61 HOH HOH B . L 4 HOH 15 215 38 HOH HOH B . L 4 HOH 16 216 27 HOH HOH B . L 4 HOH 17 217 14 HOH HOH B . L 4 HOH 18 218 54 HOH HOH B . L 4 HOH 19 219 56 HOH HOH B . L 4 HOH 20 220 66 HOH HOH B . L 4 HOH 21 221 93 HOH HOH B . L 4 HOH 22 222 36 HOH HOH B . L 4 HOH 23 223 92 HOH HOH B . L 4 HOH 24 224 59 HOH HOH B . L 4 HOH 25 225 34 HOH HOH B . L 4 HOH 26 226 6 HOH HOH B . L 4 HOH 27 227 65 HOH HOH B . L 4 HOH 28 228 48 HOH HOH B . L 4 HOH 29 229 7 HOH HOH B . L 4 HOH 30 230 42 HOH HOH B . L 4 HOH 31 231 87 HOH HOH B . # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name REFMAC _software.os ? _software.os_version ? _software.type ? _software.version 5.8.0073 _software.pdbx_ordinal 1 # _cell.entry_id 4U92 _cell.length_a 29.621 _cell.length_b 29.621 _cell.length_c 63.737 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 75 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4U92 _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.50 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 50.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Magnesium chloride hexahydrate, Barium chloride dihydrate, MOPS pH 7.0, 1,4-Dioxane' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR CCD 130 mm' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-11-13 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4U92 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8348 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 14.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 44.25 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.aniso_B[1][1] 0.00 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] -0.00 _refine.B_iso_max ? _refine.B_iso_mean 15.791 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.967 _refine.correlation_coeff_Fo_to_Fc_free 0.970 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4U92 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.50 _refine.ls_d_res_low 26.8 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8348 _refine.ls_number_reflns_R_free 425 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.11 _refine.ls_percent_reflns_R_free 4.8 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.13002 _refine.ls_R_factor_R_free 0.14423 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.12931 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.042 _refine.pdbx_overall_ESU_R_Free 0.043 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.872 _refine.overall_SU_ML 0.032 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 254 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 61 _refine_hist.number_atoms_total 323 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 26.8 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.015 0.011 284 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.007 0.020 134 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.720 1.144 436 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.739 3.000 318 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.102 0.200 36 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.039 0.020 154 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.008 0.020 64 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 1.930 1.462 284 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.933 1.464 283 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 2.712 2.165 436 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.654 15.000 493 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 4.156 14.514 468 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.500 _refine_ls_shell.d_res_low 1.539 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 29 _refine_ls_shell.number_reflns_R_work 558 _refine_ls_shell.percent_reflns_obs 93.17 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.134 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.121 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? # _struct.entry_id 4U92 _struct.title 'Crystal structure of a DNA/Ba2+ G-quadruplex containing a water-mediated C-tetrad' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4U92 _struct_keywords.text 'DNA quadruplex Barium C-tetrad, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 4 ? L N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4U92 _struct_ref.pdbx_db_accession 4U92 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4U92 A 1 ? 10 ? 4U92 1 ? 10 ? 1 10 2 1 4U92 B 1 ? 10 ? 4U92 1 ? 10 ? 1 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10320 ? 1 MORE -211 ? 1 'SSA (A^2)' 4860 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 29.6210000000 0.0000000000 -1.0000000000 0.0000000000 29.6210000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -y+1,x,z 0.0000000000 -1.0000000000 0.0000000000 29.6210000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_565 y,-x+1,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 29.6210000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 5 O6 ? ? ? 1_555 E BA . BA ? ? A DG 5 A BA 103 1_555 ? ? ? ? ? ? ? 2.579 ? ? metalc2 metalc ? ? A DG 5 O6 ? ? ? 1_555 E BA . BA ? ? A DG 5 A BA 103 2_665 ? ? ? ? ? ? ? 2.577 ? ? metalc3 metalc ? ? A DG 7 O6 ? ? ? 1_555 D BA . BA ? ? A DG 7 A BA 102 1_555 ? ? ? ? ? ? ? 2.717 ? ? metalc4 metalc ? ? A DG 7 O6 ? ? ? 1_555 D BA . BA ? ? A DG 7 A BA 102 2_665 ? ? ? ? ? ? ? 2.716 ? ? metalc5 metalc ? ? A DG 9 O6 ? ? ? 1_555 C BA . BA ? ? A DG 9 A BA 101 1_555 ? ? ? ? ? ? ? 2.721 ? ? metalc6 metalc ? ? A DG 9 O6 ? ? ? 1_555 C BA . BA ? ? A DG 9 A BA 101 2_665 ? ? ? ? ? ? ? 2.721 ? ? metalc7 metalc ? ? A DG 9 OP1 ? ? ? 1_555 F MG . MG ? ? A DG 9 A MG 104 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc8 metalc ? ? A DG 10 O6 ? ? ? 1_555 C BA . BA ? ? A DG 10 A BA 101 1_555 ? ? ? ? ? ? ? 2.800 ? ? metalc9 metalc ? ? A DG 10 O6 ? ? ? 1_555 C BA . BA ? ? A DG 10 A BA 101 2_665 ? ? ? ? ? ? ? 2.800 ? ? metalc10 metalc ? ? A DG 10 OP2 ? ? ? 1_555 F MG . MG ? ? A DG 10 A MG 104 1_555 ? ? ? ? ? ? ? 1.986 ? ? metalc11 metalc ? ? D BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 102 A HOH 204 1_555 ? ? ? ? ? ? ? 2.831 ? ? metalc12 metalc ? ? D BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 102 A HOH 204 2_665 ? ? ? ? ? ? ? 2.831 ? ? metalc13 metalc ? ? D BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 102 A HOH 214 1_555 ? ? ? ? ? ? ? 2.935 ? ? metalc14 metalc ? ? D BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 102 A HOH 214 2_665 ? ? ? ? ? ? ? 2.935 ? ? metalc15 metalc ? ? E BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 103 A HOH 204 1_555 ? ? ? ? ? ? ? 2.776 ? ? metalc16 metalc ? ? E BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 103 A HOH 204 2_665 ? ? ? ? ? ? ? 2.776 ? ? metalc17 metalc ? ? F MG . MG ? ? ? 1_555 B DG 9 OP1 ? ? A MG 104 B DG 9 1_555 ? ? ? ? ? ? ? 2.079 ? ? metalc18 metalc ? ? F MG . MG ? ? ? 1_555 B DG 10 OP2 ? ? A MG 104 B DG 10 1_555 ? ? ? ? ? ? ? 2.032 ? ? metalc19 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 104 B HOH 204 1_555 ? ? ? ? ? ? ? 2.131 ? ? metalc20 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 104 B HOH 213 1_555 ? ? ? ? ? ? ? 2.094 ? ? metalc21 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 105 A HOH 201 3_645 ? ? ? ? ? ? ? 2.030 ? ? metalc22 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 105 A HOH 203 3_645 ? ? ? ? ? ? ? 1.962 ? ? metalc23 metalc ? ? B DG 5 O6 ? ? ? 1_555 J BA . BA ? ? B DG 5 B BA 103 1_555 ? ? ? ? ? ? ? 2.656 ? ? metalc24 metalc ? ? B DG 5 O6 ? ? ? 1_555 J BA . BA ? ? B DG 5 B BA 103 2_665 ? ? ? ? ? ? ? 2.657 ? ? metalc25 metalc ? ? B DG 7 O6 ? ? ? 1_555 H BA . BA ? ? B DG 7 B BA 101 1_555 ? ? ? ? ? ? ? 2.682 ? ? metalc26 metalc ? ? B DG 7 O6 ? ? ? 1_555 H BA . BA ? ? B DG 7 B BA 101 2_665 ? ? ? ? ? ? ? 2.683 ? ? metalc27 metalc ? ? B DG 9 O6 ? ? ? 1_555 I BA . BA ? ? B DG 9 B BA 102 1_555 ? ? ? ? ? ? ? 2.729 ? ? metalc28 metalc ? ? B DG 9 O6 ? ? ? 1_555 I BA . BA ? ? B DG 9 B BA 102 2_665 ? ? ? ? ? ? ? 2.729 ? ? metalc29 metalc ? ? B DG 10 O6 ? ? ? 1_555 I BA . BA ? ? B DG 10 B BA 102 1_555 ? ? ? ? ? ? ? 2.762 ? ? metalc30 metalc ? ? B DG 10 O6 ? ? ? 1_555 I BA . BA ? ? B DG 10 B BA 102 2_665 ? ? ? ? ? ? ? 2.762 ? ? metalc31 metalc ? ? H BA . BA ? ? ? 1_555 L HOH . O ? ? B BA 101 B HOH 202 1_555 ? ? ? ? ? ? ? 2.822 ? ? metalc32 metalc ? ? H BA . BA ? ? ? 1_555 L HOH . O ? ? B BA 101 B HOH 202 2_665 ? ? ? ? ? ? ? 2.823 ? ? metalc33 metalc ? ? H BA . BA ? ? ? 1_555 L HOH . O ? ? B BA 101 B HOH 220 1_555 ? ? ? ? ? ? ? 3.048 ? ? metalc34 metalc ? ? H BA . BA ? ? ? 1_555 L HOH . O ? ? B BA 101 B HOH 220 2_665 ? ? ? ? ? ? ? 3.048 ? ? metalc35 metalc ? ? J BA . BA ? ? ? 1_555 L HOH . O ? ? B BA 103 B HOH 202 1_555 ? ? ? ? ? ? ? 2.759 ? ? metalc36 metalc ? ? J BA . BA ? ? ? 1_555 L HOH . O ? ? B BA 103 B HOH 202 2_665 ? ? ? ? ? ? ? 2.760 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 5 ? A DG 5 ? 1_555 BA ? E BA . ? A BA 103 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 0.0 ? 2 O6 ? A DG 5 ? A DG 5 ? 1_555 BA ? E BA . ? A BA 103 ? 1_555 O ? K HOH . ? A HOH 204 ? 1_555 92.6 ? 3 O6 ? A DG 5 ? A DG 5 ? 1_555 BA ? E BA . ? A BA 103 ? 1_555 O ? K HOH . ? A HOH 204 ? 1_555 92.6 ? 4 O6 ? A DG 5 ? A DG 5 ? 1_555 BA ? E BA . ? A BA 103 ? 1_555 O ? K HOH . ? A HOH 204 ? 2_665 128.3 ? 5 O6 ? A DG 5 ? A DG 5 ? 1_555 BA ? E BA . ? A BA 103 ? 1_555 O ? K HOH . ? A HOH 204 ? 2_665 128.3 ? 6 O ? K HOH . ? A HOH 204 ? 1_555 BA ? E BA . ? A BA 103 ? 1_555 O ? K HOH . ? A HOH 204 ? 2_665 93.8 ? 7 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? D BA . ? A BA 102 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 0.0 ? 8 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? D BA . ? A BA 102 ? 1_555 O ? K HOH . ? A HOH 204 ? 1_555 73.7 ? 9 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? D BA . ? A BA 102 ? 1_555 O ? K HOH . ? A HOH 204 ? 1_555 73.7 ? 10 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? D BA . ? A BA 102 ? 1_555 O ? K HOH . ? A HOH 204 ? 2_665 160.6 ? 11 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? D BA . ? A BA 102 ? 1_555 O ? K HOH . ? A HOH 204 ? 2_665 160.6 ? 12 O ? K HOH . ? A HOH 204 ? 1_555 BA ? D BA . ? A BA 102 ? 1_555 O ? K HOH . ? A HOH 204 ? 2_665 91.4 ? 13 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? D BA . ? A BA 102 ? 1_555 O ? K HOH . ? A HOH 214 ? 1_555 61.7 ? 14 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? D BA . ? A BA 102 ? 1_555 O ? K HOH . ? A HOH 214 ? 1_555 61.7 ? 15 O ? K HOH . ? A HOH 204 ? 1_555 BA ? D BA . ? A BA 102 ? 1_555 O ? K HOH . ? A HOH 214 ? 1_555 134.3 ? 16 O ? K HOH . ? A HOH 204 ? 2_665 BA ? D BA . ? A BA 102 ? 1_555 O ? K HOH . ? A HOH 214 ? 1_555 134.3 ? 17 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? D BA . ? A BA 102 ? 1_555 O ? K HOH . ? A HOH 214 ? 2_665 61.7 ? 18 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? D BA . ? A BA 102 ? 1_555 O ? K HOH . ? A HOH 214 ? 2_665 61.7 ? 19 O ? K HOH . ? A HOH 204 ? 1_555 BA ? D BA . ? A BA 102 ? 1_555 O ? K HOH . ? A HOH 214 ? 2_665 134.3 ? 20 O ? K HOH . ? A HOH 204 ? 2_665 BA ? D BA . ? A BA 102 ? 1_555 O ? K HOH . ? A HOH 214 ? 2_665 134.3 ? 21 O ? K HOH . ? A HOH 214 ? 1_555 BA ? D BA . ? A BA 102 ? 1_555 O ? K HOH . ? A HOH 214 ? 2_665 0.0 ? 22 O6 ? A DG 9 ? A DG 9 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 0.0 ? 23 O6 ? A DG 9 ? A DG 9 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 72.1 ? 24 O6 ? A DG 9 ? A DG 9 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 72.1 ? 25 O6 ? A DG 9 ? A DG 9 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 72.1 ? 26 O6 ? A DG 9 ? A DG 9 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 72.1 ? 27 O6 ? A DG 10 ? A DG 10 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 0.0 ? 28 OP1 ? A DG 9 ? A DG 9 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 OP2 ? A DG 10 ? A DG 10 ? 1_555 89.9 ? 29 OP1 ? A DG 9 ? A DG 9 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 OP1 ? B DG 9 ? B DG 9 ? 1_555 177.3 ? 30 OP2 ? A DG 10 ? A DG 10 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 OP1 ? B DG 9 ? B DG 9 ? 1_555 92.4 ? 31 OP1 ? A DG 9 ? A DG 9 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 OP2 ? B DG 10 ? B DG 10 ? 1_555 90.4 ? 32 OP2 ? A DG 10 ? A DG 10 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 OP2 ? B DG 10 ? B DG 10 ? 1_555 178.6 ? 33 OP1 ? B DG 9 ? B DG 9 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 OP2 ? B DG 10 ? B DG 10 ? 1_555 87.4 ? 34 OP1 ? A DG 9 ? A DG 9 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? B HOH 204 ? 1_555 86.2 ? 35 OP2 ? A DG 10 ? A DG 10 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? B HOH 204 ? 1_555 93.0 ? 36 OP1 ? B DG 9 ? B DG 9 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? B HOH 204 ? 1_555 92.2 ? 37 OP2 ? B DG 10 ? B DG 10 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? B HOH 204 ? 1_555 88.4 ? 38 OP1 ? A DG 9 ? A DG 9 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? B HOH 213 ? 1_555 91.2 ? 39 OP2 ? A DG 10 ? A DG 10 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? B HOH 213 ? 1_555 90.0 ? 40 OP1 ? B DG 9 ? B DG 9 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? B HOH 213 ? 1_555 90.3 ? 41 OP2 ? B DG 10 ? B DG 10 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? B HOH 213 ? 1_555 88.6 ? 42 O ? L HOH . ? B HOH 204 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? B HOH 213 ? 1_555 176.0 ? 43 O ? K HOH . ? A HOH 201 ? 3_645 MG ? G MG . ? A MG 105 ? 1_555 O ? K HOH . ? A HOH 203 ? 3_645 81.6 ? 44 O6 ? B DG 5 ? B DG 5 ? 1_555 BA ? J BA . ? B BA 103 ? 1_555 O6 ? B DG 5 ? B DG 5 ? 1_555 0.0 ? 45 O6 ? B DG 5 ? B DG 5 ? 1_555 BA ? J BA . ? B BA 103 ? 1_555 O ? L HOH . ? B HOH 202 ? 1_555 93.8 ? 46 O6 ? B DG 5 ? B DG 5 ? 1_555 BA ? J BA . ? B BA 103 ? 1_555 O ? L HOH . ? B HOH 202 ? 1_555 93.8 ? 47 O6 ? B DG 5 ? B DG 5 ? 1_555 BA ? J BA . ? B BA 103 ? 1_555 O ? L HOH . ? B HOH 202 ? 2_665 128.6 ? 48 O6 ? B DG 5 ? B DG 5 ? 1_555 BA ? J BA . ? B BA 103 ? 1_555 O ? L HOH . ? B HOH 202 ? 2_665 128.6 ? 49 O ? L HOH . ? B HOH 202 ? 1_555 BA ? J BA . ? B BA 103 ? 1_555 O ? L HOH . ? B HOH 202 ? 2_665 94.0 ? 50 O6 ? B DG 7 ? B DG 7 ? 1_555 BA ? H BA . ? B BA 101 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 0.0 ? 51 O6 ? B DG 7 ? B DG 7 ? 1_555 BA ? H BA . ? B BA 101 ? 1_555 O ? L HOH . ? B HOH 202 ? 1_555 72.9 ? 52 O6 ? B DG 7 ? B DG 7 ? 1_555 BA ? H BA . ? B BA 101 ? 1_555 O ? L HOH . ? B HOH 202 ? 1_555 72.9 ? 53 O6 ? B DG 7 ? B DG 7 ? 1_555 BA ? H BA . ? B BA 101 ? 1_555 O ? L HOH . ? B HOH 202 ? 2_665 161.1 ? 54 O6 ? B DG 7 ? B DG 7 ? 1_555 BA ? H BA . ? B BA 101 ? 1_555 O ? L HOH . ? B HOH 202 ? 2_665 161.1 ? 55 O ? L HOH . ? B HOH 202 ? 1_555 BA ? H BA . ? B BA 101 ? 1_555 O ? L HOH . ? B HOH 202 ? 2_665 91.3 ? 56 O6 ? B DG 7 ? B DG 7 ? 1_555 BA ? H BA . ? B BA 101 ? 1_555 O ? L HOH . ? B HOH 220 ? 1_555 62.2 ? 57 O6 ? B DG 7 ? B DG 7 ? 1_555 BA ? H BA . ? B BA 101 ? 1_555 O ? L HOH . ? B HOH 220 ? 1_555 62.2 ? 58 O ? L HOH . ? B HOH 202 ? 1_555 BA ? H BA . ? B BA 101 ? 1_555 O ? L HOH . ? B HOH 220 ? 1_555 134.4 ? 59 O ? L HOH . ? B HOH 202 ? 2_665 BA ? H BA . ? B BA 101 ? 1_555 O ? L HOH . ? B HOH 220 ? 1_555 134.3 ? 60 O6 ? B DG 7 ? B DG 7 ? 1_555 BA ? H BA . ? B BA 101 ? 1_555 O ? L HOH . ? B HOH 220 ? 2_665 62.2 ? 61 O6 ? B DG 7 ? B DG 7 ? 1_555 BA ? H BA . ? B BA 101 ? 1_555 O ? L HOH . ? B HOH 220 ? 2_665 62.2 ? 62 O ? L HOH . ? B HOH 202 ? 1_555 BA ? H BA . ? B BA 101 ? 1_555 O ? L HOH . ? B HOH 220 ? 2_665 134.4 ? 63 O ? L HOH . ? B HOH 202 ? 2_665 BA ? H BA . ? B BA 101 ? 1_555 O ? L HOH . ? B HOH 220 ? 2_665 134.3 ? 64 O ? L HOH . ? B HOH 220 ? 1_555 BA ? H BA . ? B BA 101 ? 1_555 O ? L HOH . ? B HOH 220 ? 2_665 0.0 ? 65 O6 ? B DG 9 ? B DG 9 ? 1_555 BA ? I BA . ? B BA 102 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 0.0 ? 66 O6 ? B DG 9 ? B DG 9 ? 1_555 BA ? I BA . ? B BA 102 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 69.8 ? 67 O6 ? B DG 9 ? B DG 9 ? 1_555 BA ? I BA . ? B BA 102 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 69.8 ? 68 O6 ? B DG 9 ? B DG 9 ? 1_555 BA ? I BA . ? B BA 102 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 69.8 ? 69 O6 ? B DG 9 ? B DG 9 ? 1_555 BA ? I BA . ? B BA 102 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 69.8 ? 70 O6 ? B DG 10 ? B DG 10 ? 1_555 BA ? I BA . ? B BA 102 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 0.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BA 101 ? 8 'binding site for residue BA A 101' AC2 Software A BA 102 ? 12 'binding site for residue BA A 102' AC3 Software A BA 103 ? 8 'binding site for residue BA A 103' AC4 Software A MG 104 ? 6 'binding site for residue MG A 104' AC5 Software A MG 105 ? 4 'binding site for residue MG A 105' AC6 Software B BA 101 ? 12 'binding site for residue BA B 101' AC7 Software B BA 102 ? 8 'binding site for residue BA B 102' AC8 Software B BA 103 ? 8 'binding site for residue BA B 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DG A 9 ? DG A 9 . ? 1_555 ? 2 AC1 8 DG A 9 ? DG A 9 . ? 4_565 ? 3 AC1 8 DG A 9 ? DG A 9 . ? 3_655 ? 4 AC1 8 DG A 9 ? DG A 9 . ? 2_665 ? 5 AC1 8 DG A 10 ? DG A 10 . ? 4_565 ? 6 AC1 8 DG A 10 ? DG A 10 . ? 3_655 ? 7 AC1 8 DG A 10 ? DG A 10 . ? 2_665 ? 8 AC1 8 DG A 10 ? DG A 10 . ? 1_555 ? 9 AC2 12 DG A 7 ? DG A 7 . ? 2_665 ? 10 AC2 12 DG A 7 ? DG A 7 . ? 4_565 ? 11 AC2 12 DG A 7 ? DG A 7 . ? 3_655 ? 12 AC2 12 DG A 7 ? DG A 7 . ? 1_555 ? 13 AC2 12 HOH K . ? HOH A 204 . ? 4_565 ? 14 AC2 12 HOH K . ? HOH A 204 . ? 3_655 ? 15 AC2 12 HOH K . ? HOH A 204 . ? 2_665 ? 16 AC2 12 HOH K . ? HOH A 204 . ? 1_555 ? 17 AC2 12 HOH K . ? HOH A 214 . ? 4_565 ? 18 AC2 12 HOH K . ? HOH A 214 . ? 3_655 ? 19 AC2 12 HOH K . ? HOH A 214 . ? 2_665 ? 20 AC2 12 HOH K . ? HOH A 214 . ? 1_555 ? 21 AC3 8 DG A 5 ? DG A 5 . ? 4_565 ? 22 AC3 8 DG A 5 ? DG A 5 . ? 3_655 ? 23 AC3 8 DG A 5 ? DG A 5 . ? 2_665 ? 24 AC3 8 DG A 5 ? DG A 5 . ? 1_555 ? 25 AC3 8 HOH K . ? HOH A 204 . ? 4_565 ? 26 AC3 8 HOH K . ? HOH A 204 . ? 3_655 ? 27 AC3 8 HOH K . ? HOH A 204 . ? 2_665 ? 28 AC3 8 HOH K . ? HOH A 204 . ? 1_555 ? 29 AC4 6 DG A 9 ? DG A 9 . ? 1_555 ? 30 AC4 6 DG A 10 ? DG A 10 . ? 1_555 ? 31 AC4 6 DG B 9 ? DG B 9 . ? 1_555 ? 32 AC4 6 DG B 10 ? DG B 10 . ? 1_555 ? 33 AC4 6 HOH L . ? HOH B 204 . ? 1_555 ? 34 AC4 6 HOH L . ? HOH B 213 . ? 1_555 ? 35 AC5 4 HOH K . ? HOH A 201 . ? 3_645 ? 36 AC5 4 HOH K . ? HOH A 201 . ? 4_565 ? 37 AC5 4 HOH K . ? HOH A 203 . ? 4_565 ? 38 AC5 4 HOH K . ? HOH A 203 . ? 3_645 ? 39 AC6 12 DG B 7 ? DG B 7 . ? 1_555 ? 40 AC6 12 DG B 7 ? DG B 7 . ? 2_665 ? 41 AC6 12 DG B 7 ? DG B 7 . ? 4_565 ? 42 AC6 12 DG B 7 ? DG B 7 . ? 3_655 ? 43 AC6 12 HOH L . ? HOH B 202 . ? 4_565 ? 44 AC6 12 HOH L . ? HOH B 202 . ? 1_555 ? 45 AC6 12 HOH L . ? HOH B 202 . ? 2_665 ? 46 AC6 12 HOH L . ? HOH B 202 . ? 3_655 ? 47 AC6 12 HOH L . ? HOH B 220 . ? 2_665 ? 48 AC6 12 HOH L . ? HOH B 220 . ? 3_655 ? 49 AC6 12 HOH L . ? HOH B 220 . ? 4_565 ? 50 AC6 12 HOH L . ? HOH B 220 . ? 1_555 ? 51 AC7 8 DG B 9 ? DG B 9 . ? 4_565 ? 52 AC7 8 DG B 9 ? DG B 9 . ? 1_555 ? 53 AC7 8 DG B 9 ? DG B 9 . ? 2_665 ? 54 AC7 8 DG B 9 ? DG B 9 . ? 3_655 ? 55 AC7 8 DG B 10 ? DG B 10 . ? 3_655 ? 56 AC7 8 DG B 10 ? DG B 10 . ? 4_565 ? 57 AC7 8 DG B 10 ? DG B 10 . ? 1_555 ? 58 AC7 8 DG B 10 ? DG B 10 . ? 2_665 ? 59 AC8 8 DG B 5 ? DG B 5 . ? 1_555 ? 60 AC8 8 DG B 5 ? DG B 5 . ? 2_665 ? 61 AC8 8 DG B 5 ? DG B 5 . ? 4_565 ? 62 AC8 8 DG B 5 ? DG B 5 . ? 3_655 ? 63 AC8 8 HOH L . ? HOH B 202 . ? 2_665 ? 64 AC8 8 HOH L . ? HOH B 202 . ? 3_655 ? 65 AC8 8 HOH L . ? HOH B 202 . ? 4_565 ? 66 AC8 8 HOH L . ? HOH B 202 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DG 5 ? ? P A DG 5 ? ? OP1 A DG 5 ? ? 99.96 105.70 -5.74 0.90 N 2 1 "O5'" A DG 5 ? ? P A DG 5 ? ? OP2 A DG 5 ? ? 97.12 105.70 -8.58 0.90 N 3 1 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 101.36 104.50 -3.14 0.40 N 4 1 "O5'" B DG 5 ? ? P B DG 5 ? ? OP1 B DG 5 ? ? 99.20 105.70 -6.50 0.90 N 5 1 "O5'" B DG 5 ? ? P B DG 5 ? ? OP2 B DG 5 ? ? 100.29 105.70 -5.41 0.90 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 9 ? ? 0.077 'SIDE CHAIN' 2 1 DG B 9 ? ? 0.073 'SIDE CHAIN' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A BA 101 ? C BA . 2 1 A BA 102 ? D BA . 3 1 A BA 103 ? E BA . 4 1 A MG 105 ? G MG . 5 1 B BA 101 ? H BA . 6 1 B BA 102 ? I BA . 7 1 B BA 103 ? J BA . 8 1 A HOH 214 ? K HOH . 9 1 B HOH 220 ? L HOH . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A DC 1 ? A DC 1 2 1 Y 1 A DC 2 ? A DC 2 3 1 Y 1 A DA 3 ? A DA 3 4 1 Y 1 A CNV 4 ? A CNV 4 5 1 Y 1 B DC 1 ? B DC 1 6 1 Y 1 B DC 2 ? B DC 2 7 1 Y 1 B DA 3 ? B DA 3 8 1 Y 1 B CNV 4 ? B CNV 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BA BA BA N N 1 CNV NAB N N N 2 CNV CAC C N N 3 CNV CAD C N N 4 CNV CAA C N N 5 CNV HAD H N N 6 CNV HAA1 H N N 7 CNV HAA2 H N N 8 CNV HAA3 H N N 9 CNV HXT H N N 10 DA OP3 O N N 11 DA P P N N 12 DA OP1 O N N 13 DA OP2 O N N 14 DA "O5'" O N N 15 DA "C5'" C N N 16 DA "C4'" C N R 17 DA "O4'" O N N 18 DA "C3'" C N S 19 DA "O3'" O N N 20 DA "C2'" C N N 21 DA "C1'" C N R 22 DA N9 N Y N 23 DA C8 C Y N 24 DA N7 N Y N 25 DA C5 C Y N 26 DA C6 C Y N 27 DA N6 N N N 28 DA N1 N Y N 29 DA C2 C Y N 30 DA N3 N Y N 31 DA C4 C Y N 32 DA HOP3 H N N 33 DA HOP2 H N N 34 DA "H5'" H N N 35 DA "H5''" H N N 36 DA "H4'" H N N 37 DA "H3'" H N N 38 DA "HO3'" H N N 39 DA "H2'" H N N 40 DA "H2''" H N N 41 DA "H1'" H N N 42 DA H8 H N N 43 DA H61 H N N 44 DA H62 H N N 45 DA H2 H N N 46 DC OP3 O N N 47 DC P P N N 48 DC OP1 O N N 49 DC OP2 O N N 50 DC "O5'" O N N 51 DC "C5'" C N N 52 DC "C4'" C N R 53 DC "O4'" O N N 54 DC "C3'" C N S 55 DC "O3'" O N N 56 DC "C2'" C N N 57 DC "C1'" C N R 58 DC N1 N N N 59 DC C2 C N N 60 DC O2 O N N 61 DC N3 N N N 62 DC C4 C N N 63 DC N4 N N N 64 DC C5 C N N 65 DC C6 C N N 66 DC HOP3 H N N 67 DC HOP2 H N N 68 DC "H5'" H N N 69 DC "H5''" H N N 70 DC "H4'" H N N 71 DC "H3'" H N N 72 DC "HO3'" H N N 73 DC "H2'" H N N 74 DC "H2''" H N N 75 DC "H1'" H N N 76 DC H41 H N N 77 DC H42 H N N 78 DC H5 H N N 79 DC H6 H N N 80 DG OP3 O N N 81 DG P P N N 82 DG OP1 O N N 83 DG OP2 O N N 84 DG "O5'" O N N 85 DG "C5'" C N N 86 DG "C4'" C N R 87 DG "O4'" O N N 88 DG "C3'" C N S 89 DG "O3'" O N N 90 DG "C2'" C N N 91 DG "C1'" C N R 92 DG N9 N Y N 93 DG C8 C Y N 94 DG N7 N Y N 95 DG C5 C Y N 96 DG C6 C N N 97 DG O6 O N N 98 DG N1 N N N 99 DG C2 C N N 100 DG N2 N N N 101 DG N3 N N N 102 DG C4 C Y N 103 DG HOP3 H N N 104 DG HOP2 H N N 105 DG "H5'" H N N 106 DG "H5''" H N N 107 DG "H4'" H N N 108 DG "H3'" H N N 109 DG "HO3'" H N N 110 DG "H2'" H N N 111 DG "H2''" H N N 112 DG "H1'" H N N 113 DG H8 H N N 114 DG H1 H N N 115 DG H21 H N N 116 DG H22 H N N 117 DT OP3 O N N 118 DT P P N N 119 DT OP1 O N N 120 DT OP2 O N N 121 DT "O5'" O N N 122 DT "C5'" C N N 123 DT "C4'" C N R 124 DT "O4'" O N N 125 DT "C3'" C N S 126 DT "O3'" O N N 127 DT "C2'" C N N 128 DT "C1'" C N R 129 DT N1 N N N 130 DT C2 C N N 131 DT O2 O N N 132 DT N3 N N N 133 DT C4 C N N 134 DT O4 O N N 135 DT C5 C N N 136 DT C7 C N N 137 DT C6 C N N 138 DT HOP3 H N N 139 DT HOP2 H N N 140 DT "H5'" H N N 141 DT "H5''" H N N 142 DT "H4'" H N N 143 DT "H3'" H N N 144 DT "HO3'" H N N 145 DT "H2'" H N N 146 DT "H2''" H N N 147 DT "H1'" H N N 148 DT H3 H N N 149 DT H71 H N N 150 DT H72 H N N 151 DT H73 H N N 152 DT H6 H N N 153 HOH O O N N 154 HOH H1 H N N 155 HOH H2 H N N 156 MG MG MG N N 157 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CNV NAB CAC trip N N 1 CNV CAC CAD sing N N 2 CNV CAD CAA sing N N 3 CNV CAD HXT sing N N 4 CNV CAD HAD sing N N 5 CNV CAA HAA1 sing N N 6 CNV CAA HAA2 sing N N 7 CNV CAA HAA3 sing N N 8 DA OP3 P sing N N 9 DA OP3 HOP3 sing N N 10 DA P OP1 doub N N 11 DA P OP2 sing N N 12 DA P "O5'" sing N N 13 DA OP2 HOP2 sing N N 14 DA "O5'" "C5'" sing N N 15 DA "C5'" "C4'" sing N N 16 DA "C5'" "H5'" sing N N 17 DA "C5'" "H5''" sing N N 18 DA "C4'" "O4'" sing N N 19 DA "C4'" "C3'" sing N N 20 DA "C4'" "H4'" sing N N 21 DA "O4'" "C1'" sing N N 22 DA "C3'" "O3'" sing N N 23 DA "C3'" "C2'" sing N N 24 DA "C3'" "H3'" sing N N 25 DA "O3'" "HO3'" sing N N 26 DA "C2'" "C1'" sing N N 27 DA "C2'" "H2'" sing N N 28 DA "C2'" "H2''" sing N N 29 DA "C1'" N9 sing N N 30 DA "C1'" "H1'" sing N N 31 DA N9 C8 sing Y N 32 DA N9 C4 sing Y N 33 DA C8 N7 doub Y N 34 DA C8 H8 sing N N 35 DA N7 C5 sing Y N 36 DA C5 C6 sing Y N 37 DA C5 C4 doub Y N 38 DA C6 N6 sing N N 39 DA C6 N1 doub Y N 40 DA N6 H61 sing N N 41 DA N6 H62 sing N N 42 DA N1 C2 sing Y N 43 DA C2 N3 doub Y N 44 DA C2 H2 sing N N 45 DA N3 C4 sing Y N 46 DC OP3 P sing N N 47 DC OP3 HOP3 sing N N 48 DC P OP1 doub N N 49 DC P OP2 sing N N 50 DC P "O5'" sing N N 51 DC OP2 HOP2 sing N N 52 DC "O5'" "C5'" sing N N 53 DC "C5'" "C4'" sing N N 54 DC "C5'" "H5'" sing N N 55 DC "C5'" "H5''" sing N N 56 DC "C4'" "O4'" sing N N 57 DC "C4'" "C3'" sing N N 58 DC "C4'" "H4'" sing N N 59 DC "O4'" "C1'" sing N N 60 DC "C3'" "O3'" sing N N 61 DC "C3'" "C2'" sing N N 62 DC "C3'" "H3'" sing N N 63 DC "O3'" "HO3'" sing N N 64 DC "C2'" "C1'" sing N N 65 DC "C2'" "H2'" sing N N 66 DC "C2'" "H2''" sing N N 67 DC "C1'" N1 sing N N 68 DC "C1'" "H1'" sing N N 69 DC N1 C2 sing N N 70 DC N1 C6 sing N N 71 DC C2 O2 doub N N 72 DC C2 N3 sing N N 73 DC N3 C4 doub N N 74 DC C4 N4 sing N N 75 DC C4 C5 sing N N 76 DC N4 H41 sing N N 77 DC N4 H42 sing N N 78 DC C5 C6 doub N N 79 DC C5 H5 sing N N 80 DC C6 H6 sing N N 81 DG OP3 P sing N N 82 DG OP3 HOP3 sing N N 83 DG P OP1 doub N N 84 DG P OP2 sing N N 85 DG P "O5'" sing N N 86 DG OP2 HOP2 sing N N 87 DG "O5'" "C5'" sing N N 88 DG "C5'" "C4'" sing N N 89 DG "C5'" "H5'" sing N N 90 DG "C5'" "H5''" sing N N 91 DG "C4'" "O4'" sing N N 92 DG "C4'" "C3'" sing N N 93 DG "C4'" "H4'" sing N N 94 DG "O4'" "C1'" sing N N 95 DG "C3'" "O3'" sing N N 96 DG "C3'" "C2'" sing N N 97 DG "C3'" "H3'" sing N N 98 DG "O3'" "HO3'" sing N N 99 DG "C2'" "C1'" sing N N 100 DG "C2'" "H2'" sing N N 101 DG "C2'" "H2''" sing N N 102 DG "C1'" N9 sing N N 103 DG "C1'" "H1'" sing N N 104 DG N9 C8 sing Y N 105 DG N9 C4 sing Y N 106 DG C8 N7 doub Y N 107 DG C8 H8 sing N N 108 DG N7 C5 sing Y N 109 DG C5 C6 sing N N 110 DG C5 C4 doub Y N 111 DG C6 O6 doub N N 112 DG C6 N1 sing N N 113 DG N1 C2 sing N N 114 DG N1 H1 sing N N 115 DG C2 N2 sing N N 116 DG C2 N3 doub N N 117 DG N2 H21 sing N N 118 DG N2 H22 sing N N 119 DG N3 C4 sing N N 120 DT OP3 P sing N N 121 DT OP3 HOP3 sing N N 122 DT P OP1 doub N N 123 DT P OP2 sing N N 124 DT P "O5'" sing N N 125 DT OP2 HOP2 sing N N 126 DT "O5'" "C5'" sing N N 127 DT "C5'" "C4'" sing N N 128 DT "C5'" "H5'" sing N N 129 DT "C5'" "H5''" sing N N 130 DT "C4'" "O4'" sing N N 131 DT "C4'" "C3'" sing N N 132 DT "C4'" "H4'" sing N N 133 DT "O4'" "C1'" sing N N 134 DT "C3'" "O3'" sing N N 135 DT "C3'" "C2'" sing N N 136 DT "C3'" "H3'" sing N N 137 DT "O3'" "HO3'" sing N N 138 DT "C2'" "C1'" sing N N 139 DT "C2'" "H2'" sing N N 140 DT "C2'" "H2''" sing N N 141 DT "C1'" N1 sing N N 142 DT "C1'" "H1'" sing N N 143 DT N1 C2 sing N N 144 DT N1 C6 sing N N 145 DT C2 O2 doub N N 146 DT C2 N3 sing N N 147 DT N3 C4 sing N N 148 DT N3 H3 sing N N 149 DT C4 O4 doub N N 150 DT C4 C5 sing N N 151 DT C5 C7 sing N N 152 DT C5 C6 doub N N 153 DT C7 H71 sing N N 154 DT C7 H72 sing N N 155 DT C7 H73 sing N N 156 DT C6 H6 sing N N 157 HOH O H1 sing N N 158 HOH O H2 sing N N 159 # _atom_sites.entry_id 4U92 _atom_sites.fract_transf_matrix[1][1] 0.033760 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033760 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015689 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C MG N O P # loop_