HEADER ELECTRON TRANSPORT 06-AUG-14 4U9E TITLE CRYSTAL STRUCTURE OF THE ZN-DIRECTED TETRAMER OF THE ENGINEERED CYT TITLE 2 CB562 VARIANT, A104/57G AB3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE CYTOCHROME B562; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 23-128; COMPND 5 SYNONYM: CYTOCHROME B-562; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CYBC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET20B(+) KEYWDS DESIGNED ENZYME, ZN-COORDINATING PROTEIN, TETRAMER ASSEMBLY, ELECTRON KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR F.A.TEZCAN,W.J.SONG REVDAT 5 27-SEP-23 4U9E 1 REMARK REVDAT 4 10-MAR-21 4U9E 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 HETSYN FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 27-NOV-19 4U9E 1 REMARK REVDAT 2 13-SEP-17 4U9E 1 SOURCE REMARK REVDAT 1 21-JAN-15 4U9E 0 JRNL AUTH W.J.SONG,A.F.TEZCAN JRNL TITL A DESIGNED SUPRAMOLECULAR PROTEIN ASSEMBLY WITH IN VIVO JRNL TITL 2 ENZYMATIC ACTIVITY JRNL REF SCIENCE V. 346 1525 2014 JRNL REFN ISSN 0036-8075 JRNL PMID 25525249 JRNL DOI 10.1126/SCIENCE.1259680 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 4104 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 184 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 292 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 9 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 712 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.89000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : -0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.866 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.379 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.368 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.305 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.904 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 776 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 711 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1058 ; 0.906 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1619 ; 0.714 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 89 ; 3.489 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 39 ;34.990 ;25.897 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 125 ;14.974 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 7.817 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 108 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 907 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 193 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 362 ; 1.220 ; 5.669 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 361 ; 1.221 ; 5.664 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 449 ; 2.221 ; 8.480 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 4 REMARK 4 4U9E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000202736. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4159 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 35.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 8.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.04800 REMARK 200 R SYM FOR SHELL (I) : 0.16800 REMARK 200 FOR SHELL : 22.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2BC5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% (+/-)-2-METHYL-2,4-PENTANEDIOL 400 REMARK 280 IN 100 MM BIS-TRIS (PH 6.5) WITH 0.2M CACL2 AND 20 MM AMPICILLIN, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.10650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.29950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.10650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.29950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.10650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.29950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.10650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.29950 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 35.65650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 49.29950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 35.65650 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 49.29950 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 35.65650 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 49.29950 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 35.65650 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 49.29950 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 35.65650 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 46.10650 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 35.65650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 46.10650 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 35.65650 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 46.10650 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 35.65650 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 46.10650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 DIHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = D2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -463.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 46.10650 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 49.29950 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 35.65650 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 49.29950 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 35.65650 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 46.10650 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 202 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 203 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 205 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 206 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 319 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 327 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 384 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 43 REMARK 465 THR A 44 REMARK 465 PRO A 45 REMARK 465 PRO A 46 REMARK 465 LYS A 47 REMARK 465 LEU A 48 REMARK 465 GLU A 49 REMARK 465 ASP A 50 REMARK 465 LYS A 51 REMARK 465 SER A 52 REMARK 465 PRO A 53 REMARK 465 ASP A 54 REMARK 465 SER A 55 REMARK 465 PRO A 56 REMARK 465 GLY A 57 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 101 CAC HEC A 201 1.53 REMARK 500 SG CYS A 101 CBC HEC A 201 2.03 REMARK 500 OD2 ASP A 2 O HOH A 301 2.12 REMARK 500 SG CYS A 98 CBB HEC A 201 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 101 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 41 70.23 -69.54 REMARK 500 ASP A 60 -100.45 61.98 REMARK 500 TYR A 105 50.37 -106.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 354 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH A 360 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH A 365 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A 366 DISTANCE = 8.26 ANGSTROMS REMARK 525 HOH A 378 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A 379 DISTANCE = 8.27 ANGSTROMS REMARK 525 HOH A 381 DISTANCE = 9.90 ANGSTROMS REMARK 525 HOH A 384 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A 388 DISTANCE = 7.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 4 OE1 REMARK 620 2 ASP A 5 OD1 83.8 REMARK 620 3 GLU A 8 OE1 114.0 39.0 REMARK 620 4 HEC A 201 O1A 70.2 114.9 101.5 REMARK 620 5 HOH A 301 O 54.7 75.6 113.0 122.8 REMARK 620 6 HOH A 316 O 78.3 156.7 164.3 72.8 81.8 REMARK 620 7 HOH A 321 O 156.4 119.8 87.7 97.6 126.7 78.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 5 OD1 REMARK 620 2 ASP A 5 OD1 0.0 REMARK 620 3 GLU A 8 OE1 107.4 107.4 REMARK 620 4 GLU A 8 OE2 84.4 84.4 46.8 REMARK 620 5 GLU A 8 OE1 107.4 107.4 0.0 46.8 REMARK 620 6 GLU A 8 OE2 84.4 84.4 46.8 0.0 46.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 7 SD REMARK 620 2 HEC A 201 NA 89.4 REMARK 620 3 HEC A 201 NB 86.2 88.7 REMARK 620 4 HEC A 201 NC 92.7 176.1 88.1 REMARK 620 5 HEC A 201 ND 94.8 92.0 178.7 91.1 REMARK 620 6 HIS A 102 NE2 173.1 89.0 87.0 88.5 92.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 206 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 GLU A 8 OE2 0.0 REMARK 620 3 HOH A 311 O 74.2 74.2 REMARK 620 4 HOH A 311 O 99.1 99.1 169.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 19 O REMARK 620 2 LYS A 19 O 0.0 REMARK 620 3 ASP A 21 OD1 75.8 75.8 REMARK 620 4 ASP A 21 OD1 75.8 75.8 0.0 REMARK 620 5 HOH A 319 O 108.2 108.2 114.3 114.3 REMARK 620 6 HOH A 319 O 108.2 108.2 114.3 114.3 0.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 207 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 ND1 REMARK 620 2 HIS A 73 NE2 86.4 REMARK 620 3 HIS A 77 NE2 81.0 5.6 REMARK 620 4 HOH A 315 O 118.8 106.3 109.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 208 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 86 OE1 REMARK 620 2 GLU A 86 OE2 52.1 REMARK 620 3 HIS A 89 ND1 101.1 101.9 REMARK 620 4 HIS A 100 NE2 124.3 72.4 93.5 REMARK 620 5 HOH A 318 O 122.9 70.9 92.7 1.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4U9D RELATED DB: PDB DBREF 4U9E A 1 106 UNP P0ABE7 C562_ECOLX 23 128 SEQADV 4U9E ALA A 34 UNP P0ABE7 ARG 56 ENGINEERED MUTATION SEQADV 4U9E ALA A 38 UNP P0ABE7 LEU 60 ENGINEERED MUTATION SEQADV 4U9E TRP A 41 UNP P0ABE7 GLN 63 ENGINEERED MUTATION SEQADV 4U9E SER A 42 UNP P0ABE7 LYS 64 ENGINEERED MUTATION SEQADV 4U9E GLY A 57 UNP P0ABE7 GLU 79 ENGINEERED MUTATION SEQADV 4U9E HIS A 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 4U9E TRP A 66 UNP P0ABE7 ASP 88 ENGINEERED MUTATION SEQADV 4U9E ILE A 69 UNP P0ABE7 VAL 91 ENGINEERED MUTATION SEQADV 4U9E HIS A 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 4U9E HIS A 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 4U9E HIS A 89 UNP P0ABE7 ALA 111 ENGINEERED MUTATION SEQADV 4U9E CYS A 96 UNP P0ABE7 THR 118 ENGINEERED MUTATION SEQADV 4U9E CYS A 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 4U9E HIS A 100 UNP P0ABE7 ALA 122 ENGINEERED MUTATION SEQADV 4U9E CYS A 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 4U9E ALA A 104 UNP P0ABE7 LYS 126 ENGINEERED MUTATION SEQRES 1 A 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 A 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 A 106 LYS ASP ALA LEU THR LYS MET ALA ALA ALA ALA ALA ASP SEQRES 4 A 106 ALA TRP SER ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 A 106 PRO ASP SER PRO GLY MET HIS ASP PHE ARG HIS GLY PHE SEQRES 6 A 106 TRP ILE LEU ILE GLY GLN ILE HIS ASP ALA LEU HIS LEU SEQRES 7 A 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN HIS ALA ALA SEQRES 8 A 106 GLU GLN LEU LYS CYS THR CYS ASN HIS CYS HIS GLN ALA SEQRES 9 A 106 TYR ARG HET HEC A 201 43 HET CA A 202 1 HET CA A 203 1 HET CA A 204 1 HET CA A 205 1 HET CA A 206 1 HET ZN A 207 1 HET ZN A 208 1 HETNAM HEC HEME C HETNAM CA CALCIUM ION HETNAM ZN ZINC ION FORMUL 2 HEC C34 H34 FE N4 O4 FORMUL 3 CA 5(CA 2+) FORMUL 8 ZN 2(ZN 2+) FORMUL 10 HOH *88(H2 O) HELIX 1 AA1 ASP A 2 LYS A 19 1 18 HELIX 2 AA2 ASN A 22 TRP A 41 1 20 HELIX 3 AA3 ASP A 60 GLU A 81 1 22 HELIX 4 AA4 LYS A 83 LEU A 94 1 12 HELIX 5 AA5 LEU A 94 TYR A 105 1 12 SSBOND 1 CYS A 96 CYS A 96 1555 14555 2.07 LINK SG CYS A 98 CAB HEC A 201 1555 1555 1.65 LINK OE1 GLU A 4 CA CA A 204 1555 1555 2.95 LINK OD1 ASP A 5 CA CA A 202 1555 1555 2.96 LINK OD1 ASP A 5 CA CA A 202 1555 4555 2.96 LINK OD1 ASP A 5 CA CA A 204 1555 4555 2.89 LINK SD MET A 7 FE HEC A 201 1555 1555 2.62 LINK OE1 GLU A 8 CA CA A 202 1555 1555 2.82 LINK OE2 GLU A 8 CA CA A 202 1555 1555 2.72 LINK OE1 GLU A 8 CA CA A 202 1555 4555 2.82 LINK OE2 GLU A 8 CA CA A 202 1555 4555 2.72 LINK OE1 GLU A 8 CA CA A 204 1555 1555 2.43 LINK OE2 GLU A 8 CA CA A 206 1555 1555 2.22 LINK OE2 GLU A 8 CA CA A 206 1555 4555 2.22 LINK O LYS A 19 CA CA A 203 1555 1555 2.58 LINK O LYS A 19 CA CA A 203 1555 3555 2.58 LINK OD1 ASP A 21 CA CA A 203 1555 1555 2.95 LINK OD1 ASP A 21 CA CA A 203 1555 3555 2.95 LINK ND1 HIS A 63 ZN ZN A 207 1555 1555 2.33 LINK NE2 HIS A 73 ZN ZN A 207 1555 11555 2.50 LINK NE2 HIS A 77 ZN ZN A 207 1555 11555 2.58 LINK OE1 GLU A 86 ZN ZN A 208 1555 14555 2.63 LINK OE2 GLU A 86 ZN ZN A 208 1555 14555 2.33 LINK ND1 HIS A 89 ZN ZN A 208 1555 14555 2.32 LINK NE2 HIS A 100 ZN ZN A 208 1555 1555 2.56 LINK NE2 HIS A 102 FE HEC A 201 1555 1555 2.60 LINK O1A HEC A 201 CA CA A 204 1555 1555 2.93 LINK CA CA A 203 O HOH A 319 1555 1555 2.66 LINK CA CA A 203 O HOH A 319 1555 3555 2.66 LINK CA CA A 204 O HOH A 301 1555 4555 2.96 LINK CA CA A 204 O HOH A 316 1555 4555 3.09 LINK CA CA A 204 O HOH A 321 1555 1555 2.95 LINK CA CA A 206 O HOH A 311 1555 1555 2.73 LINK CA CA A 206 O HOH A 311 1555 4555 2.73 LINK ZN ZN A 207 O HOH A 315 1555 1555 2.27 LINK ZN ZN A 208 O HOH A 318 1555 14555 2.54 CISPEP 1 HIS A 59 ASP A 60 0 -1.97 SITE 1 AC1 7 GLU A 4 MET A 7 PHE A 61 CYS A 98 SITE 2 AC1 7 CYS A 101 HIS A 102 CA A 204 SITE 1 AC2 3 ASP A 5 GLU A 8 CA A 206 SITE 1 AC3 3 LYS A 19 ASP A 21 HOH A 319 SITE 1 AC4 7 GLU A 4 ASP A 5 GLU A 8 HEC A 201 SITE 2 AC4 7 HOH A 301 HOH A 316 HOH A 321 SITE 1 AC5 3 GLU A 8 CA A 202 HOH A 311 SITE 1 AC6 4 HIS A 63 HIS A 73 HIS A 77 HOH A 315 SITE 1 AC7 4 GLU A 86 HIS A 89 HIS A 100 HOH A 318 CRYST1 71.313 92.213 98.599 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014023 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010142 0.00000