HEADER DNA BINDING PROTEIN 07-AUG-14 4UA1 TITLE CRYSTAL STRUCTURE OF DUAL FUNCTION TRANSCRIPTIONAL REGULATOR MERR FORM TITLE 2 BACILLUS MEGATERIUM MB1 IN COMPLEX WITH MERCURY (II) ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATORY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 STRAIN: MB1; SOURCE 5 GENE: MERR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21B KEYWDS METALLOREGULATORY PROTEIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.C.CHANG,L.Y.LIN,X.W.ZOU,C.C.HUANG,N.L.CHAN REVDAT 3 20-MAR-24 4UA1 1 JRNL REMARK LINK REVDAT 2 16-SEP-15 4UA1 1 JRNL REVDAT 1 22-JUL-15 4UA1 0 JRNL AUTH C.C.CHANG,L.Y.LIN,X.W.ZOU,C.C.HUANG,N.L.CHAN JRNL TITL STRUCTURAL BASIS OF THE MERCURY(II)-MEDIATED CONFORMATIONAL JRNL TITL 2 SWITCHING OF THE DUAL-FUNCTION TRANSCRIPTIONAL REGULATOR JRNL TITL 3 MERR JRNL REF NUCLEIC ACIDS RES. V. 43 7612 2015 JRNL REFN ESSN 1362-4962 JRNL PMID 26150423 JRNL DOI 10.1093/NAR/GKV681 REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 11681 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.1314 - 5.1216 1.00 1442 146 0.2396 0.2812 REMARK 3 2 5.1216 - 4.0708 1.00 1352 151 0.2116 0.3158 REMARK 3 3 4.0708 - 3.5579 1.00 1323 146 0.2143 0.2519 REMARK 3 4 3.5579 - 3.2333 1.00 1315 144 0.2236 0.2511 REMARK 3 5 3.2333 - 3.0019 0.99 1302 152 0.2284 0.3024 REMARK 3 6 3.0019 - 2.8252 0.98 1278 136 0.2358 0.2808 REMARK 3 7 2.8252 - 2.6839 0.97 1257 157 0.2373 0.3117 REMARK 3 8 2.6839 - 2.5672 0.96 1246 134 0.2279 0.3497 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1963 REMARK 3 ANGLE : 1.672 2616 REMARK 3 CHIRALITY : 0.064 301 REMARK 3 PLANARITY : 0.008 340 REMARK 3 DIHEDRAL : 14.660 763 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.1095 31.9169 -21.1715 REMARK 3 T TENSOR REMARK 3 T11: 0.4044 T22: 0.3218 REMARK 3 T33: 0.9918 T12: -0.0114 REMARK 3 T13: 0.1799 T23: 0.1772 REMARK 3 L TENSOR REMARK 3 L11: 1.9365 L22: 0.8912 REMARK 3 L33: 2.6509 L12: 1.1470 REMARK 3 L13: -0.0379 L23: 0.7290 REMARK 3 S TENSOR REMARK 3 S11: 0.4439 S12: 0.0987 S13: 0.0344 REMARK 3 S21: -0.0646 S22: 0.0868 S23: -0.6909 REMARK 3 S31: -0.6176 S32: 0.1984 S33: -0.1965 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.8887 17.5607 -19.3241 REMARK 3 T TENSOR REMARK 3 T11: 0.2640 T22: 0.2737 REMARK 3 T33: 0.2585 T12: -0.0048 REMARK 3 T13: -0.0737 T23: 0.1388 REMARK 3 L TENSOR REMARK 3 L11: 3.6606 L22: 2.7981 REMARK 3 L33: 3.2597 L12: 0.3913 REMARK 3 L13: -0.6628 L23: 1.6839 REMARK 3 S TENSOR REMARK 3 S11: 0.2756 S12: 0.3176 S13: 0.1920 REMARK 3 S21: -0.0901 S22: -0.2905 S23: -0.0471 REMARK 3 S31: 0.0789 S32: 0.1182 S33: 0.0073 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.5208 7.3170 7.2682 REMARK 3 T TENSOR REMARK 3 T11: 0.2055 T22: 0.2747 REMARK 3 T33: 0.3063 T12: -0.1208 REMARK 3 T13: -0.0651 T23: 0.0954 REMARK 3 L TENSOR REMARK 3 L11: 0.5159 L22: 0.6733 REMARK 3 L33: 5.2151 L12: -0.2810 REMARK 3 L13: -0.1366 L23: 0.2348 REMARK 3 S TENSOR REMARK 3 S11: -0.1606 S12: -0.2329 S13: -0.1942 REMARK 3 S21: 0.0213 S22: -0.2852 S23: 0.0356 REMARK 3 S31: 0.2487 S32: 0.3521 S33: 0.3027 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.7410 21.7785 20.1736 REMARK 3 T TENSOR REMARK 3 T11: 0.1691 T22: 0.4329 REMARK 3 T33: 0.8773 T12: -0.0610 REMARK 3 T13: 0.0044 T23: 0.0512 REMARK 3 L TENSOR REMARK 3 L11: 1.7882 L22: 0.5209 REMARK 3 L33: 1.3235 L12: -0.2983 REMARK 3 L13: 1.4141 L23: -0.2381 REMARK 3 S TENSOR REMARK 3 S11: -0.0768 S12: 0.1033 S13: 0.2063 REMARK 3 S21: -0.0525 S22: 0.3127 S23: 0.0376 REMARK 3 S31: -0.0664 S32: -0.0730 S33: -0.1055 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.2289 19.0148 21.2928 REMARK 3 T TENSOR REMARK 3 T11: 0.2765 T22: 0.3030 REMARK 3 T33: 0.2853 T12: -0.0740 REMARK 3 T13: -0.1324 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 4.7455 L22: 1.3006 REMARK 3 L33: 0.6640 L12: 0.1751 REMARK 3 L13: -1.7732 L23: -0.0032 REMARK 3 S TENSOR REMARK 3 S11: -0.2018 S12: -0.1462 S13: -0.0941 REMARK 3 S21: 0.4235 S22: 0.2542 S23: -0.4069 REMARK 3 S31: 0.1615 S32: 0.1689 S33: -0.0522 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.3345 12.5553 -5.9225 REMARK 3 T TENSOR REMARK 3 T11: 0.2427 T22: 0.2637 REMARK 3 T33: 0.2970 T12: -0.0737 REMARK 3 T13: -0.0754 T23: 0.0746 REMARK 3 L TENSOR REMARK 3 L11: 0.8621 L22: 0.3429 REMARK 3 L33: 6.4388 L12: -0.2672 REMARK 3 L13: 1.3879 L23: 0.6364 REMARK 3 S TENSOR REMARK 3 S11: -0.0868 S12: 0.0429 S13: -0.0610 REMARK 3 S21: -0.0984 S22: -0.3169 S23: 0.0654 REMARK 3 S31: -0.1555 S32: -0.5371 S33: 0.2412 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9922, 0.9792, 0.9610 REMARK 200 MONOCHROMATOR : LN2-COOLED, FIXED-EXIT DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR(CRYSTAL REMARK 200 TYPE SI(111)) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11808 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 25.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DI-AMMONIUM HYDROGEN CITRATE, PEG3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 304 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 32 REMARK 465 ARG A 33 REMARK 465 THR A 34 REMARK 465 TYR A 41 REMARK 465 SER A 42 REMARK 465 LYS A 132 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ARG B 33 REMARK 465 THR B 34 REMARK 465 TYR B 41 REMARK 465 SER B 42 REMARK 465 LYS B 132 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 4 CZ NH1 NH2 REMARK 470 ILE A 5 CG1 CG2 CD1 REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 LEU A 8 CG CD1 CD2 REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 LYS A 16 CE NZ REMARK 470 THR A 18 OG1 CG2 REMARK 470 TYR A 21 CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 22 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 27 CG CD1 CD2 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 PRO A 31 CG CD REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 TYR A 38 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 39 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 44 CD OE1 NE2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 ARG B 4 CZ NH1 NH2 REMARK 470 ILE B 5 CG1 CG2 CD1 REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 ASP B 10 CG OD1 OD2 REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 LYS B 16 CG CD CE NZ REMARK 470 THR B 18 OG1 CG2 REMARK 470 TYR B 22 CD1 CE1 CZ OH REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 PRO B 31 CG CD REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 TYR B 38 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 39 NE CZ NH1 NH2 REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 LYS B 131 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 29 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 LEU B 8 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 24 -0.18 77.52 REMARK 500 ILE A 28 132.85 177.60 REMARK 500 TYR A 38 75.25 66.43 REMARK 500 ARG A 39 -73.88 -125.35 REMARK 500 ALA B 9 -13.09 70.31 REMARK 500 ARG B 24 -3.90 77.63 REMARK 500 LYS B 36 -142.39 59.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 202 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 79 SG REMARK 620 2 CYS B 114 SG 110.3 REMARK 620 3 CYS B 123 SG 124.8 124.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 201 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 114 SG REMARK 620 2 CYS A 123 SG 111.3 REMARK 620 3 CYS B 79 O 115.0 94.8 REMARK 620 4 CYS B 79 SG 116.9 130.7 74.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UA2 RELATED DB: PDB DBREF 4UA1 A 1 132 UNP Q799U3 Q799U3_BACME 1 132 DBREF 4UA1 B 1 132 UNP Q799U3 Q799U3_BACME 1 132 SEQRES 1 A 132 MET LYS PHE ARG ILE GLY GLU LEU ALA ASP LYS CYS GLY SEQRES 2 A 132 VAL ASN LYS GLU THR ILE ARG TYR TYR GLU ARG LEU GLY SEQRES 3 A 132 LEU ILE PRO GLU PRO GLU ARG THR GLU LYS GLY TYR ARG SEQRES 4 A 132 MET TYR SER GLN GLN THR VAL ASP ARG LEU HIS PHE ILE SEQRES 5 A 132 LYS ARG MET GLN GLU LEU GLY PHE THR LEU ASN GLU ILE SEQRES 6 A 132 ASP LYS LEU LEU GLY VAL VAL ASP ARG ASP GLU ALA LYS SEQRES 7 A 132 CYS ARG ASP MET TYR ASP PHE THR ILE LEU LYS ILE GLU SEQRES 8 A 132 ASP ILE GLN ARG LYS ILE GLU ASP LEU LYS ARG ILE GLU SEQRES 9 A 132 ARG MET LEU MET ASP LEU LYS GLU ARG CYS PRO GLU ASN SEQRES 10 A 132 LYS ASP ILE TYR GLU CYS PRO ILE ILE GLU THR LEU MET SEQRES 11 A 132 LYS LYS SEQRES 1 B 132 MET LYS PHE ARG ILE GLY GLU LEU ALA ASP LYS CYS GLY SEQRES 2 B 132 VAL ASN LYS GLU THR ILE ARG TYR TYR GLU ARG LEU GLY SEQRES 3 B 132 LEU ILE PRO GLU PRO GLU ARG THR GLU LYS GLY TYR ARG SEQRES 4 B 132 MET TYR SER GLN GLN THR VAL ASP ARG LEU HIS PHE ILE SEQRES 5 B 132 LYS ARG MET GLN GLU LEU GLY PHE THR LEU ASN GLU ILE SEQRES 6 B 132 ASP LYS LEU LEU GLY VAL VAL ASP ARG ASP GLU ALA LYS SEQRES 7 B 132 CYS ARG ASP MET TYR ASP PHE THR ILE LEU LYS ILE GLU SEQRES 8 B 132 ASP ILE GLN ARG LYS ILE GLU ASP LEU LYS ARG ILE GLU SEQRES 9 B 132 ARG MET LEU MET ASP LEU LYS GLU ARG CYS PRO GLU ASN SEQRES 10 B 132 LYS ASP ILE TYR GLU CYS PRO ILE ILE GLU THR LEU MET SEQRES 11 B 132 LYS LYS HET HG A 201 1 HET HG A 202 1 HETNAM HG MERCURY (II) ION FORMUL 3 HG 2(HG 2+) FORMUL 5 HOH *38(H2 O) HELIX 1 AA1 ILE A 5 GLY A 13 5 9 HELIX 2 AA2 GLU A 17 GLU A 23 1 7 HELIX 3 AA3 GLN A 44 LEU A 58 1 15 HELIX 4 AA4 THR A 61 ASP A 75 1 15 HELIX 5 AA5 ALA A 77 ARG A 113 1 37 HELIX 6 AA6 CYS A 123 LYS A 131 1 9 HELIX 7 AA7 ALA B 9 GLY B 13 5 5 HELIX 8 AA8 GLU B 17 GLU B 23 1 7 HELIX 9 AA9 GLN B 44 LEU B 58 1 15 HELIX 10 AB1 THR B 61 ASP B 75 1 15 HELIX 11 AB2 ALA B 77 ARG B 113 1 37 HELIX 12 AB3 CYS B 123 LYS B 131 1 9 LINK SG CYS A 79 HG HG A 202 1555 1555 2.43 LINK SG CYS A 114 HG HG A 201 1555 1555 2.44 LINK SG CYS A 123 HG HG A 201 1555 1555 2.46 LINK HG HG A 201 O CYS B 79 1555 1555 3.17 LINK HG HG A 201 SG CYS B 79 1555 1555 2.44 LINK HG HG A 202 SG CYS B 114 1555 1555 2.46 LINK HG HG A 202 SG CYS B 123 1555 1555 2.47 CISPEP 1 GLY A 37 TYR A 38 0 1.89 CISPEP 2 GLY B 37 TYR B 38 0 -9.28 SITE 1 AC1 4 CYS A 114 CYS A 123 PRO A 124 CYS B 79 SITE 1 AC2 4 CYS A 79 CYS B 114 CYS B 123 PRO B 124 CRYST1 70.005 70.556 71.614 90.00 90.00 90.00 P 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014285 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013964 0.00000