HEADER OXIDOREDUCTASE 13-AUG-14 4UBG TITLE RESTING STATE OF RAT CYSTEINE DIOXYGENASE C93G VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DIOXYGENASE TYPE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYSTEINE DIOXYGENASE TYPE I,CDO-I; COMPND 5 EC: 1.13.11.20; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: CDO1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPR-IBA1/RATCDO/C93GFVARIANT KEYWDS CYSTEINE DIOXYGENASE, NON-HEME MONO-IRON, CUPIN, CYSTEINE TO GLYCINE KEYWDS 2 SUBSTITUTION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FELLNER,E.P.TCHESNOKOV,G.N.JAMESON,S.M.WILBANKS REVDAT 7 27-SEP-23 4UBG 1 REMARK LINK REVDAT 6 22-NOV-17 4UBG 1 SOURCE JRNL REMARK REVDAT 5 25-FEB-15 4UBG 1 REMARK REVDAT 4 14-JAN-15 4UBG 1 JRNL REVDAT 3 17-DEC-14 4UBG 1 JRNL REVDAT 2 03-DEC-14 4UBG 1 JRNL REVDAT 1 26-NOV-14 4UBG 0 JRNL AUTH C.G.DAVIES,M.FELLNER,E.P.TCHESNOKOV,S.M.WILBANKS,G.N.JAMESON JRNL TITL THE CYS-TYR CROSS-LINK OF CYSTEINE DIOXYGENASE CHANGES THE JRNL TITL 2 OPTIMAL PH OF THE REACTION WITHOUT A STRUCTURAL CHANGE. JRNL REF BIOCHEMISTRY V. 53 7961 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 25390690 JRNL DOI 10.1021/BI501277A REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 3 NUMBER OF REFLECTIONS : 14449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UBG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.1.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17317 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 52.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 1.24600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4KWJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROPS OF 1.5 MICROL OF REMARK 280 APPROXIMATELY 7 MG/ML C93G-CDO (10MM SODIUMPHOSPHATE, 20MM NACL REMARK 280 PH 7.5) AND 0.6 MICROL WT-CDO SEEDS IN THEIR OWN GROWTH SOLUTION REMARK 280 (25% (W/V) POLYETHYLENE GLYCOL 1500, 13MM SUCCINATE, 44MM REMARK 280 SODIUMPHOSPHATE, 44MM GLYCINE) AND 1.5 MICROL RESERVOIR BUFFER REMARK 280 WERE ALLOWED TO EQUILIBRATE ABOVE THE RESERVOIR BUFFER (26% (W/V) REMARK 280 POLYETHYLENE GLYCOL 4000, 200 MM AMMONIUM ACETATE, 100 MM REMARK 280 SODIUM CITRATE)., PH 6.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.36500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.92000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.92000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.04750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.92000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.92000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.68250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.92000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.92000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 92.04750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.92000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.92000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.68250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.36500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 3 REMARK 465 PHE A 191 REMARK 465 THR A 192 REMARK 465 THR A 193 REMARK 465 SER A 194 REMARK 465 GLY A 195 REMARK 465 SER A 196 REMARK 465 LEU A 197 REMARK 465 GLU A 198 REMARK 465 ASN A 199 REMARK 465 ASN A 200 REMARK 465 SER A 201 REMARK 465 ALA A 202 REMARK 465 TRP A 203 REMARK 465 SER A 204 REMARK 465 HIS A 205 REMARK 465 PRO A 206 REMARK 465 GLN A 207 REMARK 465 PHE A 208 REMARK 465 GLU A 209 REMARK 465 LYS A 210 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 38 O HOH A 567 1.84 REMARK 500 O HOH A 408 O HOH A 454 1.89 REMARK 500 O HOH A 545 O HOH A 612 1.90 REMARK 500 OD1 ASN A 175 O HOH A 589 1.90 REMARK 500 ND1 HIS A 173 O HOH A 587 1.91 REMARK 500 NH2 ARG A 10 O HOH A 610 1.94 REMARK 500 NE2 GLN A 65 O HOH A 615 1.97 REMARK 500 OD2 ASP A 26 O HOH A 401 2.00 REMARK 500 O LYS A 112 O HOH A 606 2.03 REMARK 500 O HOH A 446 O HOH A 457 2.04 REMARK 500 O HOH A 468 O HOH A 582 2.06 REMARK 500 O HOH A 531 O HOH A 536 2.07 REMARK 500 O HOH A 578 O HOH A 581 2.10 REMARK 500 O THR A 171 O HOH A 564 2.10 REMARK 500 NH2 ARG A 123 O HOH A 500 2.10 REMARK 500 O HOH A 408 O HOH A 463 2.15 REMARK 500 NZ LYS A 112 O HOH A 402 2.17 REMARK 500 O HOH A 554 O HOH A 568 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 67 46.89 39.75 REMARK 500 ASN A 128 -12.48 74.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 600 DISTANCE = 6.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 310 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 9 O REMARK 620 2 HOH A 501 O 124.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 54 O REMARK 620 2 ARG A 57 O 75.4 REMARK 620 3 CYS A 76 O 164.2 98.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 62 O REMARK 620 2 SER A 183 OG 130.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 309 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 82 O REMARK 620 2 HOH A 482 O 118.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 86 NE2 REMARK 620 2 HIS A 88 NE2 104.6 REMARK 620 3 HIS A 140 NE2 91.4 95.3 REMARK 620 4 HOH A 562 O 146.6 98.9 109.9 REMARK 620 5 HOH A 563 O 94.0 160.9 88.3 62.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 101 O REMARK 620 2 ASN A 144 OD1 71.8 REMARK 620 3 GLU A 149 O 146.3 77.6 REMARK 620 4 HOH A 414 O 95.7 119.2 111.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 103 O REMARK 620 2 THR A 105 OG1 117.5 REMARK 620 3 GLU A 143 OE1 122.1 104.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 135 OD1 REMARK 620 2 GLY A 138 O 125.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 516 O REMARK 620 2 HOH A 532 O 92.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 310 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UBH RELATED DB: PDB DBREF 4UBG A 1 200 UNP P21816 CDO1_RAT 1 200 SEQADV 4UBG GLY A 93 UNP P21816 CYS 93 ENGINEERED MUTATION SEQADV 4UBG SER A 201 UNP P21816 EXPRESSION TAG SEQADV 4UBG ALA A 202 UNP P21816 EXPRESSION TAG SEQADV 4UBG TRP A 203 UNP P21816 EXPRESSION TAG SEQADV 4UBG SER A 204 UNP P21816 EXPRESSION TAG SEQADV 4UBG HIS A 205 UNP P21816 EXPRESSION TAG SEQADV 4UBG PRO A 206 UNP P21816 EXPRESSION TAG SEQADV 4UBG GLN A 207 UNP P21816 EXPRESSION TAG SEQADV 4UBG PHE A 208 UNP P21816 EXPRESSION TAG SEQADV 4UBG GLU A 209 UNP P21816 EXPRESSION TAG SEQADV 4UBG LYS A 210 UNP P21816 EXPRESSION TAG SEQRES 1 A 210 MET GLU ARG THR GLU LEU LEU LYS PRO ARG THR LEU ALA SEQRES 2 A 210 ASP LEU ILE ARG ILE LEU HIS GLU LEU PHE ALA GLY ASP SEQRES 3 A 210 GLU VAL ASN VAL GLU GLU VAL GLN ALA VAL LEU GLU ALA SEQRES 4 A 210 TYR GLU SER ASN PRO ALA GLU TRP ALA LEU TYR ALA LYS SEQRES 5 A 210 PHE ASP GLN TYR ARG TYR THR ARG ASN LEU VAL ASP GLN SEQRES 6 A 210 GLY ASN GLY LYS PHE ASN LEU MET ILE LEU CYS TRP GLY SEQRES 7 A 210 GLU GLY HIS GLY SER SER ILE HIS ASP HIS THR ASP SER SEQRES 8 A 210 HIS GLY PHE LEU LYS LEU LEU GLN GLY ASN LEU LYS GLU SEQRES 9 A 210 THR LEU PHE ASP TRP PRO ASP LYS LYS SER ASN GLU MET SEQRES 10 A 210 ILE LYS LYS SER GLU ARG THR LEU ARG GLU ASN GLN CYS SEQRES 11 A 210 ALA TYR ILE ASN ASP SER ILE GLY LEU HIS ARG VAL GLU SEQRES 12 A 210 ASN VAL SER HIS THR GLU PRO ALA VAL SER LEU HIS LEU SEQRES 13 A 210 TYR SER PRO PRO PHE ASP THR CYS HIS ALA PHE ASP GLN SEQRES 14 A 210 ARG THR GLY HIS LYS ASN LYS VAL THR MET THR PHE HIS SEQRES 15 A 210 SER LYS PHE GLY ILE ARG THR PRO PHE THR THR SER GLY SEQRES 16 A 210 SER LEU GLU ASN ASN SER ALA TRP SER HIS PRO GLN PHE SEQRES 17 A 210 GLU LYS HET FE2 A 301 1 HET NA A 302 1 HET NA A 303 1 HET NA A 304 1 HET NA A 305 1 HET NA A 306 1 HET NA A 307 1 HET NA A 308 1 HET NA A 309 1 HET NA A 310 1 HETNAM FE2 FE (II) ION HETNAM NA SODIUM ION FORMUL 2 FE2 FE 2+ FORMUL 3 NA 9(NA 1+) FORMUL 12 HOH *215(H2 O) HELIX 1 AA1 THR A 11 PHE A 23 1 13 HELIX 2 AA2 ASN A 29 TYR A 40 1 12 HELIX 3 AA3 ASN A 43 ALA A 48 1 6 HELIX 4 AA4 LEU A 49 ALA A 51 5 3 HELIX 5 AA5 GLN A 65 LYS A 69 5 5 SHEET 1 AA1 7 CYS A 130 ILE A 133 0 SHEET 2 AA1 7 HIS A 92 GLN A 99 -1 N LEU A 95 O ALA A 131 SHEET 3 AA1 7 ALA A 151 SER A 158 -1 O LEU A 154 N LYS A 96 SHEET 4 AA1 7 ASN A 71 TRP A 77 -1 N MET A 73 O HIS A 155 SHEET 5 AA1 7 THR A 59 ASP A 64 -1 N VAL A 63 O LEU A 72 SHEET 6 AA1 7 SER A 183 LYS A 184 1 O SER A 183 N LEU A 62 SHEET 7 AA1 7 ILE A 187 ARG A 188 -1 O ILE A 187 N LYS A 184 SHEET 1 AA2 3 ILE A 85 HIS A 86 0 SHEET 2 AA2 3 THR A 163 PHE A 167 -1 O PHE A 167 N ILE A 85 SHEET 3 AA2 3 LYS A 174 THR A 178 -1 O VAL A 177 N CYS A 164 SHEET 1 AA3 3 LYS A 119 LEU A 125 0 SHEET 2 AA3 3 LEU A 102 PHE A 107 -1 N LEU A 102 O LEU A 125 SHEET 3 AA3 3 LEU A 139 GLU A 143 -1 O LEU A 139 N PHE A 107 LINK O PRO A 9 NA NA A 310 1555 1555 2.54 LINK O ASP A 54 NA NA A 302 1555 1555 2.88 LINK O ARG A 57 NA NA A 302 1555 1555 2.87 LINK O LEU A 62 NA NA A 308 1555 1555 2.85 LINK O CYS A 76 NA NA A 302 1555 1555 2.98 LINK O GLY A 82 NA NA A 309 1555 1555 2.90 LINK NE2 HIS A 86 FE FE2 A 301 1555 1555 2.09 LINK NE2 HIS A 88 FE FE2 A 301 1555 1555 2.31 LINK O ASN A 101 NA NA A 304 1555 1555 3.16 LINK O LYS A 103 NA NA A 305 1555 1555 3.01 LINK OG1 THR A 105 NA NA A 305 1555 1555 2.62 LINK OD1 ASP A 135 NA NA A 303 1555 1555 2.60 LINK O GLY A 138 NA NA A 303 1555 1555 2.58 LINK NE2 HIS A 140 FE FE2 A 301 1555 1555 2.24 LINK OE1 GLU A 143 NA NA A 305 1555 1555 2.63 LINK OD1 ASN A 144 NA NA A 304 1555 1555 2.73 LINK O GLU A 149 NA NA A 304 1555 1555 2.94 LINK O THR A 180 NA NA A 307 1555 1555 3.11 LINK OG SER A 183 NA NA A 308 1555 1555 2.80 LINK FE FE2 A 301 O HOH A 562 1555 1555 1.89 LINK FE FE2 A 301 O HOH A 563 1555 1555 2.59 LINK NA NA A 304 O HOH A 414 1555 1555 2.85 LINK NA NA A 306 O HOH A 516 1555 1555 2.80 LINK NA NA A 306 O HOH A 532 1555 1555 2.88 LINK NA NA A 309 O HOH A 482 1555 1555 2.97 LINK NA NA A 310 O HOH A 501 1555 1555 2.95 CISPEP 1 SER A 158 PRO A 159 0 -3.38 SITE 1 AC1 5 HIS A 86 HIS A 88 HIS A 140 HOH A 562 SITE 2 AC1 5 HOH A 563 SITE 1 AC2 4 PHE A 53 ASP A 54 ARG A 57 CYS A 76 SITE 1 AC3 5 ASP A 87 HIS A 88 ASN A 134 ASP A 135 SITE 2 AC3 5 GLY A 138 SITE 1 AC4 5 ASN A 101 ASN A 144 SER A 146 GLU A 149 SITE 2 AC4 5 HOH A 414 SITE 1 AC5 4 LYS A 103 THR A 105 ARG A 141 GLU A 143 SITE 1 AC6 6 THR A 11 LEU A 12 ALA A 13 GLU A 46 SITE 2 AC6 6 HOH A 516 HOH A 532 SITE 1 AC7 5 TYR A 56 THR A 59 ARG A 60 THR A 180 SITE 2 AC7 5 HIS A 182 SITE 1 AC8 6 TYR A 50 LEU A 62 SER A 183 LYS A 184 SITE 2 AC8 6 PHE A 185 GLY A 186 SITE 1 AC9 5 ARG A 57 TYR A 58 HIS A 81 GLY A 82 SITE 2 AC9 5 HOH A 482 SITE 1 AD1 5 LYS A 8 PRO A 9 TYR A 40 GLU A 41 SITE 2 AD1 5 HOH A 501 CRYST1 57.840 57.840 122.730 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017289 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008148 0.00000