HEADER TRANSFERASE 03-DEC-14 4UCK TITLE X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L- TITLE 2 PROTEIN DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE L; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1600-2005; COMPND 5 SYNONYM: LARGE STRUCTURAL PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN METAPNEUMOVIRUS; SOURCE 3 ORGANISM_TAXID: 162145; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPIN_E KEYWDS TRANSFERASE, METHYLTRANSFERASE, CAPPING, S-ADENOSYL METHIONINE, KEYWDS 2 ROSSMANN, GTP, ADENOSINE, TRIPHOSPHATASE EXPDTA X-RAY DIFFRACTION AUTHOR G.C.PAESEN,A.COLLET,C.SALLAMAND,F.DEBART,J.J.VASSEUR,B.CANARD, AUTHOR 2 E.DECROLY,J.M.GRIMES REVDAT 3 16-OCT-24 4UCK 1 REMARK LINK REVDAT 2 24-APR-19 4UCK 1 SOURCE REVDAT 1 18-NOV-15 4UCK 0 JRNL AUTH G.C.PAESEN,A.COLLET,C.SALLAMAND,F.DEBART,J.J.VASSEUR, JRNL AUTH 2 B.CANARD,E.DECROLY,J.M.GRIMES JRNL TITL X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL JRNL TITL 2 MONONEGAVIRALES L-PROTEIN DOMAIN. JRNL REF NAT.COMMUN. V. 6 8749 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26549102 JRNL DOI 10.1038/NCOMMS9749 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 35718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1789 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.74 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.49 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2550 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2481 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2415 REMARK 3 BIN R VALUE (WORKING SET) : 0.2447 REMARK 3 BIN FREE R VALUE : 0.3116 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.29 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 135 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6065 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 90.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -23.75030 REMARK 3 B22 (A**2) : -4.69790 REMARK 3 B33 (A**2) : 28.44810 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.407 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.386 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.226 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.381 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.228 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6253 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8438 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2243 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 145 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 906 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6253 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 817 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 8 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : 12 ; 1.000 ; HARMONIC REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6979 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.61 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.58 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 26.4354 -5.7835 -45.6256 REMARK 3 T TENSOR REMARK 3 T11: -0.1469 T22: -0.0389 REMARK 3 T33: -0.0955 T12: 0.1169 REMARK 3 T13: -0.0369 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.5027 L22: 2.4892 REMARK 3 L33: 2.3412 L12: 0.3147 REMARK 3 L13: -0.0611 L23: -1.1508 REMARK 3 S TENSOR REMARK 3 S11: -0.0756 S12: -0.0338 S13: -0.0176 REMARK 3 S21: 0.0778 S22: 0.0563 S23: 0.1819 REMARK 3 S31: -0.1502 S32: -0.2822 S33: 0.0193 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 26.1826 -7.5824 0.6728 REMARK 3 T TENSOR REMARK 3 T11: 0.0372 T22: -0.1083 REMARK 3 T33: -0.0909 T12: 0.0902 REMARK 3 T13: 0.0157 T23: -0.0600 REMARK 3 L TENSOR REMARK 3 L11: 1.6423 L22: 1.2913 REMARK 3 L33: 1.6665 L12: 0.1137 REMARK 3 L13: -0.6849 L23: -0.0380 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: -0.0097 S13: 0.1017 REMARK 3 S21: -0.0215 S22: -0.0383 S23: -0.0434 REMARK 3 S31: -0.2080 S32: -0.0691 S33: 0.0017 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UCK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1290062481. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36306 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 84.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.17000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.87000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.17500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.87000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.17000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.17500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1599 REMARK 465 ALA A 1600 REMARK 465 LEU A 1601 REMARK 465 LEU A 1602 REMARK 465 THR A 1603 REMARK 465 PRO A 1604 REMARK 465 ILE A 1605 REMARK 465 PRO A 1606 REMARK 465 SER A 1607 REMARK 465 PRO A 1608 REMARK 465 MET A 1609 REMARK 465 VAL A 1610 REMARK 465 ASN A 1611 REMARK 465 LEU A 1612 REMARK 465 THR A 1613 REMARK 465 GLN A 1614 REMARK 465 VAL A 1615 REMARK 465 TYR A 1636 REMARK 465 ASP A 1637 REMARK 465 THR A 1638 REMARK 465 SER A 1639 REMARK 465 SER A 1640 REMARK 465 ASN A 1641 REMARK 465 SER A 1922 REMARK 465 ASN A 1923 REMARK 465 HIS A 1924 REMARK 465 SER A 1925 REMARK 465 SER A 1926 REMARK 465 VAL A 1927 REMARK 465 ALA A 1928 REMARK 465 THR A 1929 REMARK 465 VAL A 1930 REMARK 465 GLY A 1931 REMARK 465 GLY A 1932 REMARK 465 SER A 1933 REMARK 465 LYS A 1934 REMARK 465 VAL A 1935 REMARK 465 SER A 2006 REMARK 465 GLY A 2007 REMARK 465 HIS A 2008 REMARK 465 HIS A 2009 REMARK 465 HIS A 2010 REMARK 465 HIS A 2011 REMARK 465 HIS A 2012 REMARK 465 HIS A 2013 REMARK 465 MET B 1599 REMARK 465 ALA B 1600 REMARK 465 LEU B 1601 REMARK 465 LEU B 1602 REMARK 465 THR B 1603 REMARK 465 PRO B 1604 REMARK 465 ILE B 1605 REMARK 465 PRO B 1606 REMARK 465 SER B 1607 REMARK 465 PRO B 1608 REMARK 465 MET B 1609 REMARK 465 VAL B 1610 REMARK 465 ASN B 1611 REMARK 465 LEU B 1612 REMARK 465 THR B 1613 REMARK 465 GLN B 1614 REMARK 465 ASN B 1923 REMARK 465 HIS B 1924 REMARK 465 SER B 1925 REMARK 465 SER B 1926 REMARK 465 VAL B 1927 REMARK 465 ALA B 1928 REMARK 465 THR B 1929 REMARK 465 VAL B 1930 REMARK 465 GLY B 1931 REMARK 465 GLY B 1932 REMARK 465 SER B 1933 REMARK 465 LYS B 1934 REMARK 465 VAL B 1935 REMARK 465 ILE B 1936 REMARK 465 GLU B 1937 REMARK 465 SER B 2006 REMARK 465 GLY B 2007 REMARK 465 HIS B 2008 REMARK 465 HIS B 2009 REMARK 465 HIS B 2010 REMARK 465 HIS B 2011 REMARK 465 HIS B 2012 REMARK 465 HIS B 2013 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A1666 -69.46 -95.50 REMARK 500 SER A1669 23.14 -145.39 REMARK 500 PRO A1729 98.92 -55.83 REMARK 500 LYS A1821 -91.05 -120.92 REMARK 500 ASN A1977 38.10 -95.37 REMARK 500 THR B1638 -9.67 -59.86 REMARK 500 SER B1640 27.66 -79.34 REMARK 500 VAL B1666 -69.23 -95.70 REMARK 500 SER B1669 23.33 -144.70 REMARK 500 LEU B1724 -21.52 -149.27 REMARK 500 LYS B1821 -90.37 -121.41 REMARK 500 ASN B1977 37.84 -95.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B3081 DISTANCE = 6.21 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2408 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1766 NE2 REMARK 620 2 HIS A1798 NE2 99.4 REMARK 620 3 CYS A1802 SG 111.2 105.1 REMARK 620 4 CYS A1805 SG 111.0 111.0 117.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2408 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B1766 NE2 REMARK 620 2 HIS B1798 NE2 99.9 REMARK 620 3 CYS B1802 SG 106.3 102.4 REMARK 620 4 CYS B1805 SG 115.3 116.1 114.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 2409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 2409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UCI RELATED DB: PDB REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L- REMARK 900 PROTEIN DOMAIN REMARK 900 RELATED ID: 4UCJ RELATED DB: PDB REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L- REMARK 900 PROTEIN DOMAIN REMARK 900 RELATED ID: 4UCL RELATED DB: PDB REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L- REMARK 900 PROTEIN DOMAIN REMARK 900 RELATED ID: 4UCY RELATED DB: PDB REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L- REMARK 900 PROTEIN DOMAIN REMARK 900 RELATED ID: 4UCZ RELATED DB: PDB REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L- REMARK 900 PROTEIN DOMAIN REMARK 900 RELATED ID: 4UD0 RELATED DB: PDB REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L- REMARK 900 PROTEIN DOMAIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 K397E MUTANT DBREF 4UCK A 1600 2005 UNP Q91L20 Q91L20_9MONO 1600 2005 DBREF 4UCK B 1600 2005 UNP Q91L20 Q91L20_9MONO 1600 2005 SEQADV 4UCK MET A 1599 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK SER A 2006 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK GLY A 2007 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK HIS A 2008 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK HIS A 2009 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK HIS A 2010 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK HIS A 2011 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK HIS A 2012 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK HIS A 2013 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK GLU A 1995 UNP Q91L20 LYS 1995 ENGINEERED MUTATION SEQADV 4UCK MET B 1599 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK SER B 2006 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK GLY B 2007 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK HIS B 2008 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK HIS B 2009 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK HIS B 2010 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK HIS B 2011 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK HIS B 2012 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK HIS B 2013 UNP Q91L20 EXPRESSION TAG SEQADV 4UCK GLU B 1995 UNP Q91L20 LYS 1995 ENGINEERED MUTATION SEQRES 1 A 415 MET ALA LEU LEU THR PRO ILE PRO SER PRO MET VAL ASN SEQRES 2 A 415 LEU THR GLN VAL ILE ASP PRO THR GLU GLN LEU ALA TYR SEQRES 3 A 415 PHE PRO LYS ILE THR PHE GLU ARG LEU LYS ASN TYR ASP SEQRES 4 A 415 THR SER SER ASN TYR ALA LYS GLY LYS LEU THR ARG ASN SEQRES 5 A 415 TYR MET ILE LEU LEU PRO TRP GLN HIS VAL ASN ARG TYR SEQRES 6 A 415 ASN PHE VAL PHE SER SER THR GLY CYS LYS VAL SER LEU SEQRES 7 A 415 LYS THR CYS ILE GLY LYS LEU MET LYS ASP LEU ASN PRO SEQRES 8 A 415 LYS VAL LEU TYR PHE ILE GLY GLU GLY ALA GLY ASN TRP SEQRES 9 A 415 MET ALA ARG THR ALA CYS GLU TYR PRO ASP ILE LYS PHE SEQRES 10 A 415 VAL TYR ARG SER LEU LYS ASP ASP LEU ASP HIS HIS TYR SEQRES 11 A 415 PRO LEU GLU TYR GLN ARG VAL ILE GLY GLU LEU SER ARG SEQRES 12 A 415 ILE ILE ASP SER GLY GLU GLY LEU SER MET GLU THR THR SEQRES 13 A 415 ASP ALA THR GLN LYS THR HIS TRP ASP LEU ILE HIS ARG SEQRES 14 A 415 VAL SER LYS ASP ALA LEU LEU ILE THR LEU CYS ASP ALA SEQRES 15 A 415 GLU PHE LYS ASP ARG ASP ASP PHE PHE LYS MET VAL ILE SEQRES 16 A 415 LEU TRP ARG LYS HIS VAL LEU SER CYS ARG ILE CYS THR SEQRES 17 A 415 THR TYR GLY THR ASP LEU TYR LEU PHE ALA LYS TYR HIS SEQRES 18 A 415 ALA LYS ASP CYS ASN VAL LYS LEU PRO PHE PHE VAL ARG SEQRES 19 A 415 SER VAL ALA THR PHE ILE MET GLN GLY SER LYS LEU SER SEQRES 20 A 415 GLY SER GLU CYS TYR ILE LEU LEU THR LEU GLY HIS HIS SEQRES 21 A 415 ASN ASN LEU PRO CYS HIS GLY GLU ILE GLN ASN SER LYS SEQRES 22 A 415 MET LYS ILE ALA VAL CYS ASN ASP PHE TYR ALA ALA LYS SEQRES 23 A 415 LYS LEU ASP ASN LYS SER ILE GLU ALA ASN CYS LYS SER SEQRES 24 A 415 LEU LEU SER GLY LEU ARG ILE PRO ILE ASN LYS LYS GLU SEQRES 25 A 415 LEU ASN ARG GLN ARG ARG LEU LEU THR LEU GLN SER ASN SEQRES 26 A 415 HIS SER SER VAL ALA THR VAL GLY GLY SER LYS VAL ILE SEQRES 27 A 415 GLU SER LYS TRP LEU THR ASN LYS ALA ASN THR ILE ILE SEQRES 28 A 415 ASP TRP LEU GLU HIS ILE LEU ASN SER PRO LYS GLY GLU SEQRES 29 A 415 LEU ASN TYR ASP PHE PHE GLU ALA LEU GLU ASN THR TYR SEQRES 30 A 415 PRO ASN MET ILE LYS LEU ILE ASP ASN LEU GLY ASN ALA SEQRES 31 A 415 GLU ILE LYS LYS LEU ILE GLU VAL THR GLY TYR MET LEU SEQRES 32 A 415 VAL SER LYS LYS SER GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 415 MET ALA LEU LEU THR PRO ILE PRO SER PRO MET VAL ASN SEQRES 2 B 415 LEU THR GLN VAL ILE ASP PRO THR GLU GLN LEU ALA TYR SEQRES 3 B 415 PHE PRO LYS ILE THR PHE GLU ARG LEU LYS ASN TYR ASP SEQRES 4 B 415 THR SER SER ASN TYR ALA LYS GLY LYS LEU THR ARG ASN SEQRES 5 B 415 TYR MET ILE LEU LEU PRO TRP GLN HIS VAL ASN ARG TYR SEQRES 6 B 415 ASN PHE VAL PHE SER SER THR GLY CYS LYS VAL SER LEU SEQRES 7 B 415 LYS THR CYS ILE GLY LYS LEU MET LYS ASP LEU ASN PRO SEQRES 8 B 415 LYS VAL LEU TYR PHE ILE GLY GLU GLY ALA GLY ASN TRP SEQRES 9 B 415 MET ALA ARG THR ALA CYS GLU TYR PRO ASP ILE LYS PHE SEQRES 10 B 415 VAL TYR ARG SER LEU LYS ASP ASP LEU ASP HIS HIS TYR SEQRES 11 B 415 PRO LEU GLU TYR GLN ARG VAL ILE GLY GLU LEU SER ARG SEQRES 12 B 415 ILE ILE ASP SER GLY GLU GLY LEU SER MET GLU THR THR SEQRES 13 B 415 ASP ALA THR GLN LYS THR HIS TRP ASP LEU ILE HIS ARG SEQRES 14 B 415 VAL SER LYS ASP ALA LEU LEU ILE THR LEU CYS ASP ALA SEQRES 15 B 415 GLU PHE LYS ASP ARG ASP ASP PHE PHE LYS MET VAL ILE SEQRES 16 B 415 LEU TRP ARG LYS HIS VAL LEU SER CYS ARG ILE CYS THR SEQRES 17 B 415 THR TYR GLY THR ASP LEU TYR LEU PHE ALA LYS TYR HIS SEQRES 18 B 415 ALA LYS ASP CYS ASN VAL LYS LEU PRO PHE PHE VAL ARG SEQRES 19 B 415 SER VAL ALA THR PHE ILE MET GLN GLY SER LYS LEU SER SEQRES 20 B 415 GLY SER GLU CYS TYR ILE LEU LEU THR LEU GLY HIS HIS SEQRES 21 B 415 ASN ASN LEU PRO CYS HIS GLY GLU ILE GLN ASN SER LYS SEQRES 22 B 415 MET LYS ILE ALA VAL CYS ASN ASP PHE TYR ALA ALA LYS SEQRES 23 B 415 LYS LEU ASP ASN LYS SER ILE GLU ALA ASN CYS LYS SER SEQRES 24 B 415 LEU LEU SER GLY LEU ARG ILE PRO ILE ASN LYS LYS GLU SEQRES 25 B 415 LEU ASN ARG GLN ARG ARG LEU LEU THR LEU GLN SER ASN SEQRES 26 B 415 HIS SER SER VAL ALA THR VAL GLY GLY SER LYS VAL ILE SEQRES 27 B 415 GLU SER LYS TRP LEU THR ASN LYS ALA ASN THR ILE ILE SEQRES 28 B 415 ASP TRP LEU GLU HIS ILE LEU ASN SER PRO LYS GLY GLU SEQRES 29 B 415 LEU ASN TYR ASP PHE PHE GLU ALA LEU GLU ASN THR TYR SEQRES 30 B 415 PRO ASN MET ILE LYS LEU ILE ASP ASN LEU GLY ASN ALA SEQRES 31 B 415 GLU ILE LYS LYS LEU ILE GLU VAL THR GLY TYR MET LEU SEQRES 32 B 415 VAL SER LYS LYS SER GLY HIS HIS HIS HIS HIS HIS HET ZN A2408 1 HET SAM A2409 27 HET ZN B2408 1 HET SAM B2409 27 HETNAM ZN ZINC ION HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 SAM 2(C15 H22 N6 O5 S) FORMUL 7 HOH *155(H2 O) HELIX 1 1 ASP A 1617 LEU A 1622 1 6 HELIX 2 2 ALA A 1623 PHE A 1625 5 3 HELIX 3 3 PRO A 1656 VAL A 1660 5 5 HELIX 4 4 SER A 1669 LYS A 1673 5 5 HELIX 5 5 SER A 1675 ASN A 1688 1 14 HELIX 6 6 GLY A 1700 TYR A 1710 1 11 HELIX 7 7 PRO A 1729 GLY A 1737 1 9 HELIX 8 8 MET A 1751 ASP A 1755 5 5 HELIX 9 9 GLN A 1758 LEU A 1764 1 7 HELIX 10 10 ASP A 1784 CYS A 1802 1 19 HELIX 11 11 CYS A 1802 GLY A 1809 1 8 HELIX 12 12 CYS A 1863 ASN A 1878 1 16 HELIX 13 13 ASP A 1887 LEU A 1899 1 13 HELIX 14 14 ASN A 1907 LEU A 1920 1 14 HELIX 15 15 ILE A 1936 ASN A 1957 1 22 HELIX 16 16 ASN A 1964 THR A 1974 1 11 HELIX 17 17 ASN A 1977 LEU A 1985 1 9 HELIX 18 18 GLY A 1986 LYS A 2004 1 19 HELIX 19 19 ASP B 1617 LEU B 1622 1 6 HELIX 20 20 ALA B 1623 PHE B 1625 5 3 HELIX 21 21 PRO B 1656 VAL B 1660 5 5 HELIX 22 22 SER B 1669 LYS B 1673 5 5 HELIX 23 23 SER B 1675 ASN B 1688 1 14 HELIX 24 24 GLY B 1700 TYR B 1710 1 11 HELIX 25 25 PRO B 1729 GLY B 1737 1 9 HELIX 26 26 MET B 1751 ASP B 1755 5 5 HELIX 27 27 GLN B 1758 LEU B 1764 1 7 HELIX 28 28 ILE B 1765 ARG B 1767 5 3 HELIX 29 29 ASP B 1784 CYS B 1802 1 19 HELIX 30 30 CYS B 1802 TYR B 1808 1 7 HELIX 31 31 CYS B 1863 ASN B 1878 1 16 HELIX 32 32 ASP B 1887 LEU B 1899 1 13 HELIX 33 33 ASN B 1907 LEU B 1920 1 14 HELIX 34 34 SER B 1938 ASN B 1957 1 20 HELIX 35 35 ASN B 1964 THR B 1974 1 11 HELIX 36 36 ASN B 1977 LEU B 1985 1 9 HELIX 37 37 GLY B 1986 LYS B 2004 1 19 SHEET 1 AA 8 PHE A1630 LYS A1634 0 SHEET 2 AA 8 VAL A1831 MET A1839 -1 O THR A1836 N LEU A1633 SHEET 3 AA 8 GLU A1848 LEU A1855 -1 O TYR A1850 N PHE A1837 SHEET 4 AA 8 TYR A1813 HIS A1819 -1 O LEU A1814 N LEU A1853 SHEET 5 AA 8 ILE A1775 CYS A1778 1 O THR A1776 N PHE A1815 SHEET 6 AA 8 VAL A1691 ILE A1695 1 O TYR A1693 N LEU A1777 SHEET 7 AA 8 LYS A1714 TYR A1717 1 O LYS A1714 N LEU A1692 SHEET 8 AA 8 ILE A1742 ASP A1744 1 N ILE A1743 O PHE A1715 SHEET 1 AB 2 THR A1648 ARG A1649 0 SHEET 2 AB 2 LEU B1647 THR B1648 -1 O THR B1648 N THR A1648 SHEET 1 BA 8 PHE B1630 LYS B1634 0 SHEET 2 BA 8 VAL B1831 MET B1839 -1 O THR B1836 N LEU B1633 SHEET 3 BA 8 GLU B1848 LEU B1855 -1 O TYR B1850 N PHE B1837 SHEET 4 BA 8 TYR B1813 HIS B1819 -1 O LEU B1814 N LEU B1853 SHEET 5 BA 8 ILE B1775 CYS B1778 1 O THR B1776 N PHE B1815 SHEET 6 BA 8 VAL B1691 ILE B1695 1 O TYR B1693 N LEU B1777 SHEET 7 BA 8 LYS B1714 TYR B1717 1 O LYS B1714 N LEU B1692 SHEET 8 BA 8 ILE B1742 ASP B1744 1 N ILE B1743 O PHE B1715 SSBOND 1 CYS A 1877 CYS B 1877 1555 1555 2.65 LINK NE2 HIS A1766 ZN ZN A2408 1555 1555 2.09 LINK NE2 HIS A1798 ZN ZN A2408 1555 1555 2.12 LINK SG CYS A1802 ZN ZN A2408 1555 1555 2.17 LINK SG CYS A1805 ZN ZN A2408 1555 1555 2.27 LINK NE2 HIS B1766 ZN ZN B2408 1555 1555 2.08 LINK NE2 HIS B1798 ZN ZN B2408 1555 1555 2.10 LINK SG CYS B1802 ZN ZN B2408 1555 1555 2.28 LINK SG CYS B1805 ZN ZN B2408 1555 1555 2.18 CISPEP 1 ILE A 1904 PRO A 1905 0 4.60 CISPEP 2 ILE B 1904 PRO B 1905 0 4.38 SITE 1 AC1 4 HIS A1766 HIS A1798 CYS A1802 CYS A1805 SITE 1 AC2 4 HIS B1766 HIS B1798 CYS B1802 CYS B1805 SITE 1 AC3 20 SER A1668 THR A1670 GLY A1696 GLU A1697 SITE 2 AC3 20 GLY A1698 ALA A1699 GLY A1700 ASN A1701 SITE 3 AC3 20 TRP A1702 SER A1719 LEU A1720 THR A1754 SITE 4 AC3 20 ASP A1755 ALA A1756 ASP A1779 ALA A1780 SITE 5 AC3 20 GLU A1781 PHE A1782 HOH A3029 HOH A3074 SITE 1 AC4 20 SER B1668 THR B1670 GLY B1696 GLU B1697 SITE 2 AC4 20 GLY B1698 ALA B1699 GLY B1700 ASN B1701 SITE 3 AC4 20 TRP B1702 SER B1719 LEU B1720 ASP B1725 SITE 4 AC4 20 HIS B1726 THR B1754 ASP B1755 ALA B1756 SITE 5 AC4 20 ASP B1779 ALA B1780 GLU B1781 PHE B1782 CRYST1 80.340 84.350 181.740 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012447 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011855 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005502 0.00000