HEADER TRANSFERASE 05-DEC-14 4UD0 TITLE X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L- TITLE 2 PROTEIN DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE L; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: METHYLTRANSFERASE DOMAIN, RESIDUES 1600-2005; COMPND 5 SYNONYM: LARGE STRUCTURAL PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN METAPNEUMOVIRUS; SOURCE 3 ORGANISM_TAXID: 162145; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPIN_E KEYWDS TRANSFERASE, CAPPING, L PROTEIN, ROSSMANN, TRIPHOSPHATASE EXPDTA X-RAY DIFFRACTION AUTHOR G.C.PAESEN,A.COLLET,C.SALLAMAND,F.DEBART,J.J.VASSEUR,B.CANARD, AUTHOR 2 E.DECROLY,J.M.GRIMES REVDAT 3 08-MAY-24 4UD0 1 REMARK LINK REVDAT 2 24-APR-19 4UD0 1 SOURCE REVDAT 1 18-NOV-15 4UD0 0 JRNL AUTH G.C.PAESEN,A.COLLET,C.SALLAMAND,F.DEBART,J.J.VASSEUR, JRNL AUTH 2 B.CANARD,E.DECROLY,J.M.GRIMES JRNL TITL X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL JRNL TITL 2 MONONEGAVIRALES L-PROTEIN DOMAIN. JRNL REF NAT.COMMUN. V. 6 8749 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26549102 JRNL DOI 10.1038/NCOMMS9749 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 10817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 522 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.58 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3005 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2476 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2870 REMARK 3 BIN R VALUE (WORKING SET) : 0.2465 REMARK 3 BIN FREE R VALUE : 0.2727 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.49 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 135 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2840 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 152.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 144.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -18.45940 REMARK 3 B22 (A**2) : -18.45940 REMARK 3 B33 (A**2) : 36.91890 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.770 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.377 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2935 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3962 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1043 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 67 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 425 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2935 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 385 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 4 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : 6 ; 1.000 ; HARMONIC REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3365 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.38 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.04 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -119.9282 25.7664 20.0235 REMARK 3 T TENSOR REMARK 3 T11: -0.6203 T22: -0.2684 REMARK 3 T33: -0.2076 T12: 0.1621 REMARK 3 T13: -0.2018 T23: -0.0881 REMARK 3 L TENSOR REMARK 3 L11: -0.8818 L22: 1.7825 REMARK 3 L33: 1.1862 L12: 0.2491 REMARK 3 L13: -0.6197 L23: -2.0051 REMARK 3 S TENSOR REMARK 3 S11: -0.0306 S12: -0.0044 S13: 0.2223 REMARK 3 S21: 0.2612 S22: 0.0501 S23: -0.3611 REMARK 3 S31: -0.0933 S32: 0.3627 S33: -0.0195 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1290062487. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10856 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 62.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 35.10 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.65000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 125.30000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 125.30000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.65000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -226.83000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 130.96036 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1599 REMARK 465 ALA B 1600 REMARK 465 LEU B 1601 REMARK 465 LEU B 1602 REMARK 465 THR B 1603 REMARK 465 PRO B 1604 REMARK 465 ILE B 1605 REMARK 465 PRO B 1606 REMARK 465 SER B 1607 REMARK 465 PRO B 1608 REMARK 465 MET B 1609 REMARK 465 VAL B 1610 REMARK 465 ASN B 1611 REMARK 465 LEU B 1612 REMARK 465 THR B 1613 REMARK 465 GLN B 1614 REMARK 465 VAL B 1615 REMARK 465 LYS B 1634 REMARK 465 ASN B 1635 REMARK 465 TYR B 1636 REMARK 465 ASP B 1637 REMARK 465 THR B 1638 REMARK 465 SER B 1639 REMARK 465 SER B 1640 REMARK 465 ASN B 1641 REMARK 465 TYR B 1642 REMARK 465 ALA B 1643 REMARK 465 LYS B 1644 REMARK 465 GLY B 1645 REMARK 465 LYS B 1646 REMARK 465 LEU B 1647 REMARK 465 LEU B 1911 REMARK 465 ASN B 1912 REMARK 465 ARG B 1913 REMARK 465 GLN B 1914 REMARK 465 ARG B 1915 REMARK 465 ARG B 1916 REMARK 465 LEU B 1917 REMARK 465 LEU B 1918 REMARK 465 THR B 1919 REMARK 465 LEU B 1920 REMARK 465 GLN B 1921 REMARK 465 SER B 1922 REMARK 465 ASN B 1923 REMARK 465 HIS B 1924 REMARK 465 SER B 1925 REMARK 465 SER B 1926 REMARK 465 VAL B 1927 REMARK 465 ALA B 1928 REMARK 465 THR B 1929 REMARK 465 VAL B 1930 REMARK 465 GLY B 1931 REMARK 465 GLY B 1932 REMARK 465 SER B 1933 REMARK 465 LYS B 1934 REMARK 465 VAL B 1935 REMARK 465 ILE B 1936 REMARK 465 SER B 2006 REMARK 465 GLY B 2007 REMARK 465 HIS B 2008 REMARK 465 HIS B 2009 REMARK 465 HIS B 2010 REMARK 465 HIS B 2011 REMARK 465 HIS B 2012 REMARK 465 HIS B 2013 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE MET B 1652 N CYS B 1802 6245 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET B1652 74.65 59.23 REMARK 500 VAL B1666 -60.81 -124.85 REMARK 500 VAL B1768 -63.51 -131.49 REMARK 500 SER B1801 40.69 -148.41 REMARK 500 ASN B1824 46.20 37.36 REMARK 500 PRO B1862 -177.24 -67.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B3018 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B3019 DISTANCE = 7.72 ANGSTROMS REMARK 525 HOH B3020 DISTANCE = 5.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2409 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B1766 NE2 REMARK 620 2 HIS B1798 NE2 105.9 REMARK 620 3 CYS B1802 SG 114.1 105.9 REMARK 620 4 CYS B1805 SG 110.3 107.9 112.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 2410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UCI RELATED DB: PDB REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L- REMARK 900 PROTEIN DOMAIN REMARK 900 RELATED ID: 4UCJ RELATED DB: PDB REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L- REMARK 900 PROTEIN DOMAIN REMARK 900 RELATED ID: 4UCK RELATED DB: PDB REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L- REMARK 900 PROTEIN DOMAIN REMARK 900 RELATED ID: 4UCL RELATED DB: PDB REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L- REMARK 900 PROTEIN DOMAIN REMARK 900 RELATED ID: 4UCY RELATED DB: PDB REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L- REMARK 900 PROTEIN DOMAIN REMARK 900 RELATED ID: 4UCZ RELATED DB: PDB REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L- REMARK 900 PROTEIN DOMAIN DBREF 4UD0 B 1600 2005 UNP Q91L20 Q91L20_9MONO 1600 2005 SEQADV 4UD0 MET B 1599 UNP Q91L20 EXPRESSION TAG SEQADV 4UD0 ALA B 1877 UNP Q91L20 CYS 1877 ENGINEERED MUTATION SEQADV 4UD0 SER B 2006 UNP Q91L20 EXPRESSION TAG SEQADV 4UD0 GLY B 2007 UNP Q91L20 EXPRESSION TAG SEQADV 4UD0 HIS B 2008 UNP Q91L20 EXPRESSION TAG SEQADV 4UD0 HIS B 2009 UNP Q91L20 EXPRESSION TAG SEQADV 4UD0 HIS B 2010 UNP Q91L20 EXPRESSION TAG SEQADV 4UD0 HIS B 2011 UNP Q91L20 EXPRESSION TAG SEQADV 4UD0 HIS B 2012 UNP Q91L20 EXPRESSION TAG SEQADV 4UD0 HIS B 2013 UNP Q91L20 EXPRESSION TAG SEQRES 1 B 415 MET ALA LEU LEU THR PRO ILE PRO SER PRO MET VAL ASN SEQRES 2 B 415 LEU THR GLN VAL ILE ASP PRO THR GLU GLN LEU ALA TYR SEQRES 3 B 415 PHE PRO LYS ILE THR PHE GLU ARG LEU LYS ASN TYR ASP SEQRES 4 B 415 THR SER SER ASN TYR ALA LYS GLY LYS LEU THR ARG ASN SEQRES 5 B 415 TYR MET ILE LEU LEU PRO TRP GLN HIS VAL ASN ARG TYR SEQRES 6 B 415 ASN PHE VAL PHE SER SER THR GLY CYS LYS VAL SER LEU SEQRES 7 B 415 LYS THR CYS ILE GLY LYS LEU MET LYS ASP LEU ASN PRO SEQRES 8 B 415 LYS VAL LEU TYR PHE ILE GLY GLU GLY ALA GLY ASN TRP SEQRES 9 B 415 MET ALA ARG THR ALA CYS GLU TYR PRO ASP ILE LYS PHE SEQRES 10 B 415 VAL TYR ARG SER LEU LYS ASP ASP LEU ASP HIS HIS TYR SEQRES 11 B 415 PRO LEU GLU TYR GLN ARG VAL ILE GLY GLU LEU SER ARG SEQRES 12 B 415 ILE ILE ASP SER GLY GLU GLY LEU SER MET GLU THR THR SEQRES 13 B 415 ASP ALA THR GLN LYS THR HIS TRP ASP LEU ILE HIS ARG SEQRES 14 B 415 VAL SER LYS ASP ALA LEU LEU ILE THR LEU CYS ASP ALA SEQRES 15 B 415 GLU PHE LYS ASP ARG ASP ASP PHE PHE LYS MET VAL ILE SEQRES 16 B 415 LEU TRP ARG LYS HIS VAL LEU SER CYS ARG ILE CYS THR SEQRES 17 B 415 THR TYR GLY THR ASP LEU TYR LEU PHE ALA LYS TYR HIS SEQRES 18 B 415 ALA LYS ASP CYS ASN VAL LYS LEU PRO PHE PHE VAL ARG SEQRES 19 B 415 SER VAL ALA THR PHE ILE MET GLN GLY SER LYS LEU SER SEQRES 20 B 415 GLY SER GLU CYS TYR ILE LEU LEU THR LEU GLY HIS HIS SEQRES 21 B 415 ASN ASN LEU PRO CYS HIS GLY GLU ILE GLN ASN SER LYS SEQRES 22 B 415 MET LYS ILE ALA VAL ALA ASN ASP PHE TYR ALA ALA LYS SEQRES 23 B 415 LYS LEU ASP ASN LYS SER ILE GLU ALA ASN CYS LYS SER SEQRES 24 B 415 LEU LEU SER GLY LEU ARG ILE PRO ILE ASN LYS LYS GLU SEQRES 25 B 415 LEU ASN ARG GLN ARG ARG LEU LEU THR LEU GLN SER ASN SEQRES 26 B 415 HIS SER SER VAL ALA THR VAL GLY GLY SER LYS VAL ILE SEQRES 27 B 415 GLU SER LYS TRP LEU THR ASN LYS ALA ASN THR ILE ILE SEQRES 28 B 415 ASP TRP LEU GLU HIS ILE LEU ASN SER PRO LYS GLY GLU SEQRES 29 B 415 LEU ASN TYR ASP PHE PHE GLU ALA LEU GLU ASN THR TYR SEQRES 30 B 415 PRO ASN MET ILE LYS LEU ILE ASP ASN LEU GLY ASN ALA SEQRES 31 B 415 GLU ILE LYS LYS LEU ILE LYS VAL THR GLY TYR MET LEU SEQRES 32 B 415 VAL SER LYS LYS SER GLY HIS HIS HIS HIS HIS HIS HET SO4 B2408 5 HET ZN B2409 1 HET SAH B2410 26 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 2 SO4 O4 S 2- FORMUL 3 ZN ZN 2+ FORMUL 4 SAH C14 H20 N6 O5 S FORMUL 5 HOH *20(H2 O) HELIX 1 1 ASP B 1617 LEU B 1622 1 6 HELIX 2 2 ALA B 1623 PHE B 1625 5 3 HELIX 3 3 PRO B 1656 VAL B 1660 5 5 HELIX 4 4 SER B 1669 LYS B 1673 5 5 HELIX 5 5 SER B 1675 ILE B 1680 1 6 HELIX 6 6 ILE B 1680 LEU B 1687 1 8 HELIX 7 7 GLY B 1700 TYR B 1710 1 11 HELIX 8 8 PRO B 1729 GLY B 1737 1 9 HELIX 9 9 SER B 1750 ASP B 1755 1 6 HELIX 10 10 GLN B 1758 LEU B 1764 1 7 HELIX 11 11 ILE B 1765 ARG B 1767 5 3 HELIX 12 12 ASP B 1786 LEU B 1800 1 15 HELIX 13 13 ILE B 1804 GLY B 1809 5 6 HELIX 14 14 CYS B 1863 ASN B 1878 1 16 HELIX 15 15 ASP B 1887 LEU B 1899 1 13 HELIX 16 16 GLU B 1937 LEU B 1941 5 5 HELIX 17 17 THR B 1942 SER B 1958 1 17 HELIX 18 18 ASN B 1964 THR B 1974 1 11 HELIX 19 19 ASN B 1977 LEU B 1985 1 9 HELIX 20 20 GLY B 1986 LYS B 2004 1 19 SHEET 1 BA 8 PHE B1630 LEU B1633 0 SHEET 2 BA 8 VAL B1831 MET B1839 -1 O THR B1836 N LEU B1633 SHEET 3 BA 8 GLU B1848 LEU B1855 -1 O TYR B1850 N PHE B1837 SHEET 4 BA 8 TYR B1813 HIS B1819 -1 O LEU B1814 N LEU B1853 SHEET 5 BA 8 ILE B1775 CYS B1778 1 O THR B1776 N PHE B1815 SHEET 6 BA 8 VAL B1691 ILE B1695 1 O TYR B1693 N LEU B1777 SHEET 7 BA 8 LYS B1714 TYR B1717 1 O LYS B1714 N LEU B1692 SHEET 8 BA 8 ILE B1742 ASP B1744 1 O ASP B1744 N TYR B1717 LINK NE2 HIS B1766 ZN ZN B2409 1555 1555 1.94 LINK NE2 HIS B1798 ZN ZN B2409 1555 1555 2.06 LINK SG CYS B1802 ZN ZN B2409 1555 1555 2.17 LINK SG CYS B1805 ZN ZN B2409 1555 1555 2.30 SITE 1 AC1 6 GLN B1658 HIS B1659 ARG B1662 LYS B1673 SITE 2 AC1 6 GLU B1848 LYS B1991 SITE 1 AC2 4 HIS B1766 HIS B1798 CYS B1802 CYS B1805 SITE 1 AC3 20 SER B1668 THR B1670 GLY B1696 GLU B1697 SITE 2 AC3 20 GLY B1698 ALA B1699 GLY B1700 ASN B1701 SITE 3 AC3 20 TRP B1702 SER B1719 LEU B1720 ASP B1725 SITE 4 AC3 20 HIS B1726 THR B1754 ASP B1755 ALA B1756 SITE 5 AC3 20 ASP B1779 ALA B1780 GLU B1781 PHE B1782 CRYST1 75.610 75.610 187.950 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013226 0.007636 0.000000 0.00000 SCALE2 0.000000 0.015272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005321 0.00000