HEADER TRANSFERASE 05-DEC-14 4UD0
TITLE X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L-
TITLE 2 PROTEIN DOMAIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE L;
COMPND 3 CHAIN: B;
COMPND 4 FRAGMENT: METHYLTRANSFERASE DOMAIN, RESIDUES 1600-2005;
COMPND 5 SYNONYM: LARGE STRUCTURAL PROTEIN;
COMPND 6 ENGINEERED: YES;
COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN METAPNEUMOVIRUS;
SOURCE 3 ORGANISM_TAXID: 162145;
SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 5 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF21;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPIN_E
KEYWDS TRANSFERASE, CAPPING, L PROTEIN, ROSSMANN, TRIPHOSPHATASE
EXPDTA X-RAY DIFFRACTION
AUTHOR G.C.PAESEN,A.COLLET,C.SALLAMAND,F.DEBART,J.J.VASSEUR,B.CANARD,
AUTHOR 2 E.DECROLY,J.M.GRIMES
REVDAT 3 08-MAY-24 4UD0 1 REMARK LINK
REVDAT 2 24-APR-19 4UD0 1 SOURCE
REVDAT 1 18-NOV-15 4UD0 0
JRNL AUTH G.C.PAESEN,A.COLLET,C.SALLAMAND,F.DEBART,J.J.VASSEUR,
JRNL AUTH 2 B.CANARD,E.DECROLY,J.M.GRIMES
JRNL TITL X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL
JRNL TITL 2 MONONEGAVIRALES L-PROTEIN DOMAIN.
JRNL REF NAT.COMMUN. V. 6 8749 2015
JRNL REFN ESSN 2041-1723
JRNL PMID 26549102
JRNL DOI 10.1038/NCOMMS9749
REMARK 2
REMARK 2 RESOLUTION. 3.20 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.2
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.65
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 3 NUMBER OF REFLECTIONS : 10817
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.201
REMARK 3 R VALUE (WORKING SET) : 0.199
REMARK 3 FREE R VALUE : 0.229
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830
REMARK 3 FREE R VALUE TEST SET COUNT : 522
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 5
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.58
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3005
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2476
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2870
REMARK 3 BIN R VALUE (WORKING SET) : 0.2465
REMARK 3 BIN FREE R VALUE : 0.2727
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.49
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 135
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2840
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 32
REMARK 3 SOLVENT ATOMS : 20
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 152.6
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 144.5
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -18.45940
REMARK 3 B22 (A**2) : -18.45940
REMARK 3 B33 (A**2) : 36.91890
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.770
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.377
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 2935 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 3962 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1043 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 67 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 425 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 2935 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 385 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : 4 ; 1.000 ; HARMONIC
REMARK 3 UTILITY ANGLES : 6 ; 1.000 ; HARMONIC
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3365 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.008
REMARK 3 BOND ANGLES (DEGREES) : 1.04
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.38
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.04
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -119.9282 25.7664 20.0235
REMARK 3 T TENSOR
REMARK 3 T11: -0.6203 T22: -0.2684
REMARK 3 T33: -0.2076 T12: 0.1621
REMARK 3 T13: -0.2018 T23: -0.0881
REMARK 3 L TENSOR
REMARK 3 L11: -0.8818 L22: 1.7825
REMARK 3 L33: 1.1862 L12: 0.2491
REMARK 3 L13: -0.6197 L23: -2.0051
REMARK 3 S TENSOR
REMARK 3 S11: -0.0306 S12: -0.0044 S13: 0.2223
REMARK 3 S21: 0.2612 S22: 0.0501 S23: -0.3611
REMARK 3 S31: -0.0933 S32: 0.3627 S33: -0.0195
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4UD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-DEC-14.
REMARK 100 THE DEPOSITION ID IS D_1290062487.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 05-MAY-13
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : NULL
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : NULL
REMARK 200 DETECTOR MANUFACTURER : NULL
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2
REMARK 200 DATA SCALING SOFTWARE : XIA2
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10856
REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200
REMARK 200 RESOLUTION RANGE LOW (A) : 62.650
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 200 DATA REDUNDANCY : 35.10
REMARK 200 R MERGE (I) : 0.07000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NONE
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 62.23
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+2/3
REMARK 290 6555 -X,-X+Y,-Z+1/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.65000
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 125.30000
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 125.30000
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.65000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 30990 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.9 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -226.83000
REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 130.96036
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET B 1599
REMARK 465 ALA B 1600
REMARK 465 LEU B 1601
REMARK 465 LEU B 1602
REMARK 465 THR B 1603
REMARK 465 PRO B 1604
REMARK 465 ILE B 1605
REMARK 465 PRO B 1606
REMARK 465 SER B 1607
REMARK 465 PRO B 1608
REMARK 465 MET B 1609
REMARK 465 VAL B 1610
REMARK 465 ASN B 1611
REMARK 465 LEU B 1612
REMARK 465 THR B 1613
REMARK 465 GLN B 1614
REMARK 465 VAL B 1615
REMARK 465 LYS B 1634
REMARK 465 ASN B 1635
REMARK 465 TYR B 1636
REMARK 465 ASP B 1637
REMARK 465 THR B 1638
REMARK 465 SER B 1639
REMARK 465 SER B 1640
REMARK 465 ASN B 1641
REMARK 465 TYR B 1642
REMARK 465 ALA B 1643
REMARK 465 LYS B 1644
REMARK 465 GLY B 1645
REMARK 465 LYS B 1646
REMARK 465 LEU B 1647
REMARK 465 LEU B 1911
REMARK 465 ASN B 1912
REMARK 465 ARG B 1913
REMARK 465 GLN B 1914
REMARK 465 ARG B 1915
REMARK 465 ARG B 1916
REMARK 465 LEU B 1917
REMARK 465 LEU B 1918
REMARK 465 THR B 1919
REMARK 465 LEU B 1920
REMARK 465 GLN B 1921
REMARK 465 SER B 1922
REMARK 465 ASN B 1923
REMARK 465 HIS B 1924
REMARK 465 SER B 1925
REMARK 465 SER B 1926
REMARK 465 VAL B 1927
REMARK 465 ALA B 1928
REMARK 465 THR B 1929
REMARK 465 VAL B 1930
REMARK 465 GLY B 1931
REMARK 465 GLY B 1932
REMARK 465 SER B 1933
REMARK 465 LYS B 1934
REMARK 465 VAL B 1935
REMARK 465 ILE B 1936
REMARK 465 SER B 2006
REMARK 465 GLY B 2007
REMARK 465 HIS B 2008
REMARK 465 HIS B 2009
REMARK 465 HIS B 2010
REMARK 465 HIS B 2011
REMARK 465 HIS B 2012
REMARK 465 HIS B 2013
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 CE MET B 1652 N CYS B 1802 6245 2.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 MET B1652 74.65 59.23
REMARK 500 VAL B1666 -60.81 -124.85
REMARK 500 VAL B1768 -63.51 -131.49
REMARK 500 SER B1801 40.69 -148.41
REMARK 500 ASN B1824 46.20 37.36
REMARK 500 PRO B1862 -177.24 -67.27
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH B3018 DISTANCE = 6.08 ANGSTROMS
REMARK 525 HOH B3019 DISTANCE = 7.72 ANGSTROMS
REMARK 525 HOH B3020 DISTANCE = 5.93 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B2409 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS B1766 NE2
REMARK 620 2 HIS B1798 NE2 105.9
REMARK 620 3 CYS B1802 SG 114.1 105.9
REMARK 620 4 CYS B1805 SG 110.3 107.9 112.2
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2408
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2409
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 2410
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4UCI RELATED DB: PDB
REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L-
REMARK 900 PROTEIN DOMAIN
REMARK 900 RELATED ID: 4UCJ RELATED DB: PDB
REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L-
REMARK 900 PROTEIN DOMAIN
REMARK 900 RELATED ID: 4UCK RELATED DB: PDB
REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L-
REMARK 900 PROTEIN DOMAIN
REMARK 900 RELATED ID: 4UCL RELATED DB: PDB
REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L-
REMARK 900 PROTEIN DOMAIN
REMARK 900 RELATED ID: 4UCY RELATED DB: PDB
REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L-
REMARK 900 PROTEIN DOMAIN
REMARK 900 RELATED ID: 4UCZ RELATED DB: PDB
REMARK 900 X-RAY STRUCTURE AND ACTIVITIES OF AN ESSENTIAL MONONEGAVIRALES L-
REMARK 900 PROTEIN DOMAIN
DBREF 4UD0 B 1600 2005 UNP Q91L20 Q91L20_9MONO 1600 2005
SEQADV 4UD0 MET B 1599 UNP Q91L20 EXPRESSION TAG
SEQADV 4UD0 ALA B 1877 UNP Q91L20 CYS 1877 ENGINEERED MUTATION
SEQADV 4UD0 SER B 2006 UNP Q91L20 EXPRESSION TAG
SEQADV 4UD0 GLY B 2007 UNP Q91L20 EXPRESSION TAG
SEQADV 4UD0 HIS B 2008 UNP Q91L20 EXPRESSION TAG
SEQADV 4UD0 HIS B 2009 UNP Q91L20 EXPRESSION TAG
SEQADV 4UD0 HIS B 2010 UNP Q91L20 EXPRESSION TAG
SEQADV 4UD0 HIS B 2011 UNP Q91L20 EXPRESSION TAG
SEQADV 4UD0 HIS B 2012 UNP Q91L20 EXPRESSION TAG
SEQADV 4UD0 HIS B 2013 UNP Q91L20 EXPRESSION TAG
SEQRES 1 B 415 MET ALA LEU LEU THR PRO ILE PRO SER PRO MET VAL ASN
SEQRES 2 B 415 LEU THR GLN VAL ILE ASP PRO THR GLU GLN LEU ALA TYR
SEQRES 3 B 415 PHE PRO LYS ILE THR PHE GLU ARG LEU LYS ASN TYR ASP
SEQRES 4 B 415 THR SER SER ASN TYR ALA LYS GLY LYS LEU THR ARG ASN
SEQRES 5 B 415 TYR MET ILE LEU LEU PRO TRP GLN HIS VAL ASN ARG TYR
SEQRES 6 B 415 ASN PHE VAL PHE SER SER THR GLY CYS LYS VAL SER LEU
SEQRES 7 B 415 LYS THR CYS ILE GLY LYS LEU MET LYS ASP LEU ASN PRO
SEQRES 8 B 415 LYS VAL LEU TYR PHE ILE GLY GLU GLY ALA GLY ASN TRP
SEQRES 9 B 415 MET ALA ARG THR ALA CYS GLU TYR PRO ASP ILE LYS PHE
SEQRES 10 B 415 VAL TYR ARG SER LEU LYS ASP ASP LEU ASP HIS HIS TYR
SEQRES 11 B 415 PRO LEU GLU TYR GLN ARG VAL ILE GLY GLU LEU SER ARG
SEQRES 12 B 415 ILE ILE ASP SER GLY GLU GLY LEU SER MET GLU THR THR
SEQRES 13 B 415 ASP ALA THR GLN LYS THR HIS TRP ASP LEU ILE HIS ARG
SEQRES 14 B 415 VAL SER LYS ASP ALA LEU LEU ILE THR LEU CYS ASP ALA
SEQRES 15 B 415 GLU PHE LYS ASP ARG ASP ASP PHE PHE LYS MET VAL ILE
SEQRES 16 B 415 LEU TRP ARG LYS HIS VAL LEU SER CYS ARG ILE CYS THR
SEQRES 17 B 415 THR TYR GLY THR ASP LEU TYR LEU PHE ALA LYS TYR HIS
SEQRES 18 B 415 ALA LYS ASP CYS ASN VAL LYS LEU PRO PHE PHE VAL ARG
SEQRES 19 B 415 SER VAL ALA THR PHE ILE MET GLN GLY SER LYS LEU SER
SEQRES 20 B 415 GLY SER GLU CYS TYR ILE LEU LEU THR LEU GLY HIS HIS
SEQRES 21 B 415 ASN ASN LEU PRO CYS HIS GLY GLU ILE GLN ASN SER LYS
SEQRES 22 B 415 MET LYS ILE ALA VAL ALA ASN ASP PHE TYR ALA ALA LYS
SEQRES 23 B 415 LYS LEU ASP ASN LYS SER ILE GLU ALA ASN CYS LYS SER
SEQRES 24 B 415 LEU LEU SER GLY LEU ARG ILE PRO ILE ASN LYS LYS GLU
SEQRES 25 B 415 LEU ASN ARG GLN ARG ARG LEU LEU THR LEU GLN SER ASN
SEQRES 26 B 415 HIS SER SER VAL ALA THR VAL GLY GLY SER LYS VAL ILE
SEQRES 27 B 415 GLU SER LYS TRP LEU THR ASN LYS ALA ASN THR ILE ILE
SEQRES 28 B 415 ASP TRP LEU GLU HIS ILE LEU ASN SER PRO LYS GLY GLU
SEQRES 29 B 415 LEU ASN TYR ASP PHE PHE GLU ALA LEU GLU ASN THR TYR
SEQRES 30 B 415 PRO ASN MET ILE LYS LEU ILE ASP ASN LEU GLY ASN ALA
SEQRES 31 B 415 GLU ILE LYS LYS LEU ILE LYS VAL THR GLY TYR MET LEU
SEQRES 32 B 415 VAL SER LYS LYS SER GLY HIS HIS HIS HIS HIS HIS
HET SO4 B2408 5
HET ZN B2409 1
HET SAH B2410 26
HETNAM SO4 SULFATE ION
HETNAM ZN ZINC ION
HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE
FORMUL 2 SO4 O4 S 2-
FORMUL 3 ZN ZN 2+
FORMUL 4 SAH C14 H20 N6 O5 S
FORMUL 5 HOH *20(H2 O)
HELIX 1 1 ASP B 1617 LEU B 1622 1 6
HELIX 2 2 ALA B 1623 PHE B 1625 5 3
HELIX 3 3 PRO B 1656 VAL B 1660 5 5
HELIX 4 4 SER B 1669 LYS B 1673 5 5
HELIX 5 5 SER B 1675 ILE B 1680 1 6
HELIX 6 6 ILE B 1680 LEU B 1687 1 8
HELIX 7 7 GLY B 1700 TYR B 1710 1 11
HELIX 8 8 PRO B 1729 GLY B 1737 1 9
HELIX 9 9 SER B 1750 ASP B 1755 1 6
HELIX 10 10 GLN B 1758 LEU B 1764 1 7
HELIX 11 11 ILE B 1765 ARG B 1767 5 3
HELIX 12 12 ASP B 1786 LEU B 1800 1 15
HELIX 13 13 ILE B 1804 GLY B 1809 5 6
HELIX 14 14 CYS B 1863 ASN B 1878 1 16
HELIX 15 15 ASP B 1887 LEU B 1899 1 13
HELIX 16 16 GLU B 1937 LEU B 1941 5 5
HELIX 17 17 THR B 1942 SER B 1958 1 17
HELIX 18 18 ASN B 1964 THR B 1974 1 11
HELIX 19 19 ASN B 1977 LEU B 1985 1 9
HELIX 20 20 GLY B 1986 LYS B 2004 1 19
SHEET 1 BA 8 PHE B1630 LEU B1633 0
SHEET 2 BA 8 VAL B1831 MET B1839 -1 O THR B1836 N LEU B1633
SHEET 3 BA 8 GLU B1848 LEU B1855 -1 O TYR B1850 N PHE B1837
SHEET 4 BA 8 TYR B1813 HIS B1819 -1 O LEU B1814 N LEU B1853
SHEET 5 BA 8 ILE B1775 CYS B1778 1 O THR B1776 N PHE B1815
SHEET 6 BA 8 VAL B1691 ILE B1695 1 O TYR B1693 N LEU B1777
SHEET 7 BA 8 LYS B1714 TYR B1717 1 O LYS B1714 N LEU B1692
SHEET 8 BA 8 ILE B1742 ASP B1744 1 O ASP B1744 N TYR B1717
LINK NE2 HIS B1766 ZN ZN B2409 1555 1555 1.94
LINK NE2 HIS B1798 ZN ZN B2409 1555 1555 2.06
LINK SG CYS B1802 ZN ZN B2409 1555 1555 2.17
LINK SG CYS B1805 ZN ZN B2409 1555 1555 2.30
SITE 1 AC1 6 GLN B1658 HIS B1659 ARG B1662 LYS B1673
SITE 2 AC1 6 GLU B1848 LYS B1991
SITE 1 AC2 4 HIS B1766 HIS B1798 CYS B1802 CYS B1805
SITE 1 AC3 20 SER B1668 THR B1670 GLY B1696 GLU B1697
SITE 2 AC3 20 GLY B1698 ALA B1699 GLY B1700 ASN B1701
SITE 3 AC3 20 TRP B1702 SER B1719 LEU B1720 ASP B1725
SITE 4 AC3 20 HIS B1726 THR B1754 ASP B1755 ALA B1756
SITE 5 AC3 20 ASP B1779 ALA B1780 GLU B1781 PHE B1782
CRYST1 75.610 75.610 187.950 90.00 90.00 120.00 P 31 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013226 0.007636 0.000000 0.00000
SCALE2 0.000000 0.015272 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005321 0.00000