data_4UF1 # _entry.id 4UF1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.344 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4UF1 PDBE EBI-62627 WWPDB D_1290062627 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4UF2 unspecified 'DEERPOX VIRUS DPV022 IN COMPLEX WITH BAX BH3' PDB 4UF3 unspecified 'DEERPOX VIRUS DPV022 IN COMPLEX WITH BIM BH3' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4UF1 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2014-12-23 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Burton, D.R.' 1 'Kvansakul, M.' 2 # _citation.id primary _citation.title 'Structural Basis of Deerpox Virus-Mediated Inhibition of Apoptosis.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 71 _citation.page_first 1593 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26249341 _citation.pdbx_database_id_DOI 10.1107/S1399004715009402 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Burton, D.R.' 1 ? primary 'Caria, S.' 2 ? primary 'Marshall, B.' 3 ? primary 'Barry, M.' 4 ? primary 'Kvansakul, M.' 5 ? # _cell.entry_id 4UF1 _cell.length_a 93.260 _cell.length_b 93.260 _cell.length_c 45.620 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UF1 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Antiapoptotic membrane protein' 19632.287 1 ? ? 'BCL-2, UNP RESIDUES 1-155' ? 2 polymer syn 'Bcl-2 homologous antagonist/killer' 2882.151 1 ? ? 'BH3, UNP RESIDUES 67-92' ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 42 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 DPV022 2 'Apoptosis regulator BAK,Bcl-2-like protein 7,Bcl2-L-7' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MGSSHHHHHHSQDMEAAIEFDEIVKKLLNIYINDICTTGEKRLLNNYEKSILDRIYKSCEYIKKNYELDFNSMYNQININ NITTSDIKSKIIEALLIDSRPSVKLATLSFISLIAEKWGEKNRAKIMEILSNEIVEKISNNGKDFIDFIDRDDDDIVDDY VLITNYLK ; ;MGSSHHHHHHSQDMEAAIEFDEIVKKLLNIYINDICTTGEKRLLNNYEKSILDRIYKSCEYIKKNYELDFNSMYNQININ NITTSDIKSKIIEALLIDSRPSVKLATLSFISLIAEKWGEKNRAKIMEILSNEIVEKISNNGKDFIDFIDRDDDDIVDDY VLITNYLK ; A ? 2 'polypeptide(L)' no no PSSTMGQVGRQLAIIGDDINRRYDSE PSSTMGQVGRQLAIIGDDINRRYDSE B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 GLN n 1 13 ASP n 1 14 MET n 1 15 GLU n 1 16 ALA n 1 17 ALA n 1 18 ILE n 1 19 GLU n 1 20 PHE n 1 21 ASP n 1 22 GLU n 1 23 ILE n 1 24 VAL n 1 25 LYS n 1 26 LYS n 1 27 LEU n 1 28 LEU n 1 29 ASN n 1 30 ILE n 1 31 TYR n 1 32 ILE n 1 33 ASN n 1 34 ASP n 1 35 ILE n 1 36 CYS n 1 37 THR n 1 38 THR n 1 39 GLY n 1 40 GLU n 1 41 LYS n 1 42 ARG n 1 43 LEU n 1 44 LEU n 1 45 ASN n 1 46 ASN n 1 47 TYR n 1 48 GLU n 1 49 LYS n 1 50 SER n 1 51 ILE n 1 52 LEU n 1 53 ASP n 1 54 ARG n 1 55 ILE n 1 56 TYR n 1 57 LYS n 1 58 SER n 1 59 CYS n 1 60 GLU n 1 61 TYR n 1 62 ILE n 1 63 LYS n 1 64 LYS n 1 65 ASN n 1 66 TYR n 1 67 GLU n 1 68 LEU n 1 69 ASP n 1 70 PHE n 1 71 ASN n 1 72 SER n 1 73 MET n 1 74 TYR n 1 75 ASN n 1 76 GLN n 1 77 ILE n 1 78 ASN n 1 79 ILE n 1 80 ASN n 1 81 ASN n 1 82 ILE n 1 83 THR n 1 84 THR n 1 85 SER n 1 86 ASP n 1 87 ILE n 1 88 LYS n 1 89 SER n 1 90 LYS n 1 91 ILE n 1 92 ILE n 1 93 GLU n 1 94 ALA n 1 95 LEU n 1 96 LEU n 1 97 ILE n 1 98 ASP n 1 99 SER n 1 100 ARG n 1 101 PRO n 1 102 SER n 1 103 VAL n 1 104 LYS n 1 105 LEU n 1 106 ALA n 1 107 THR n 1 108 LEU n 1 109 SER n 1 110 PHE n 1 111 ILE n 1 112 SER n 1 113 LEU n 1 114 ILE n 1 115 ALA n 1 116 GLU n 1 117 LYS n 1 118 TRP n 1 119 GLY n 1 120 GLU n 1 121 LYS n 1 122 ASN n 1 123 ARG n 1 124 ALA n 1 125 LYS n 1 126 ILE n 1 127 MET n 1 128 GLU n 1 129 ILE n 1 130 LEU n 1 131 SER n 1 132 ASN n 1 133 GLU n 1 134 ILE n 1 135 VAL n 1 136 GLU n 1 137 LYS n 1 138 ILE n 1 139 SER n 1 140 ASN n 1 141 ASN n 1 142 GLY n 1 143 LYS n 1 144 ASP n 1 145 PHE n 1 146 ILE n 1 147 ASP n 1 148 PHE n 1 149 ILE n 1 150 ASP n 1 151 ARG n 1 152 ASP n 1 153 ASP n 1 154 ASP n 1 155 ASP n 1 156 ILE n 1 157 VAL n 1 158 ASP n 1 159 ASP n 1 160 TYR n 1 161 VAL n 1 162 LEU n 1 163 ILE n 1 164 THR n 1 165 ASN n 1 166 TYR n 1 167 LEU n 1 168 LYS n 2 1 PRO n 2 2 SER n 2 3 SER n 2 4 THR n 2 5 MET n 2 6 GLY n 2 7 GLN n 2 8 VAL n 2 9 GLY n 2 10 ARG n 2 11 GLN n 2 12 LEU n 2 13 ALA n 2 14 ILE n 2 15 ILE n 2 16 GLY n 2 17 ASP n 2 18 ASP n 2 19 ILE n 2 20 ASN n 2 21 ARG n 2 22 ARG n 2 23 TYR n 2 24 ASP n 2 25 SER n 2 26 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 168 _entity_src_gen.gene_src_common_name DPV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene DpV84gp022 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain W-1170-84 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Deerpox virus (strain W-1170-84)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 305676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pDUET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 26 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP Q08FF8_DPV84 Q08FF8 ? 1 ;MEAAIEFDEIVKKLLNIYINDICTTGEKRLLNNYEKSILDRIYKSCEYIKKNYELDFNSMYNQININDITTSDIKSKIIE ALLIDSRPSVKLATLSFISLIAEKWGEKNRAKIMEILSNEIVEKISNNGKDFIDFIDRDDDDIVDDYVLITNYLK ; 1 2 UNP BAK_HUMAN Q16611 ? 2 PSSTMGQVGRQLAIIGDDINRRYDSE 67 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4UF1 A 14 ? 168 ? Q08FF8 1 ? 155 ? 1 155 2 2 4UF1 B 1 ? 26 ? Q16611 67 ? 92 ? 67 92 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4UF1 MET A 1 ? UNP Q08FF8 ? ? 'initiating methionine' -12 1 1 4UF1 GLY A 2 ? UNP Q08FF8 ? ? 'expression tag' -11 2 1 4UF1 SER A 3 ? UNP Q08FF8 ? ? 'expression tag' -10 3 1 4UF1 SER A 4 ? UNP Q08FF8 ? ? 'expression tag' -9 4 1 4UF1 HIS A 5 ? UNP Q08FF8 ? ? 'expression tag' -8 5 1 4UF1 HIS A 6 ? UNP Q08FF8 ? ? 'expression tag' -7 6 1 4UF1 HIS A 7 ? UNP Q08FF8 ? ? 'expression tag' -6 7 1 4UF1 HIS A 8 ? UNP Q08FF8 ? ? 'expression tag' -5 8 1 4UF1 HIS A 9 ? UNP Q08FF8 ? ? 'expression tag' -4 9 1 4UF1 HIS A 10 ? UNP Q08FF8 ? ? 'expression tag' -3 10 1 4UF1 SER A 11 ? UNP Q08FF8 ? ? 'expression tag' -2 11 1 4UF1 GLN A 12 ? UNP Q08FF8 ? ? 'expression tag' -1 12 1 4UF1 ASP A 13 ? UNP Q08FF8 ? ? 'expression tag' 0 13 1 4UF1 ASN A 81 ? UNP Q08FF8 ASP 68 conflict 68 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4UF1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_percent_sol 39.4 _exptl_crystal.description 'THE STARTING MODEL WAS USED WITHOUT THE BIMBH3 LIGAND' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '17% PEG 8000, 0.2M MES PH 5.5, 0.2M AMMONIUM SULPHATE' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2013-06-25 _diffrn_detector.details 'SILICON MIRRORS (ADAPTIVE AND U-BENT)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL MONOCHROMATOR (SI111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.95370 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX2' _diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron' _diffrn_source.pdbx_synchrotron_beamline MX2 _diffrn_source.pdbx_wavelength 0.95370 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4UF1 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 41.71 _reflns.d_resolution_high 2.30 _reflns.number_obs 9129 _reflns.number_all ? _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs 0.10 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.90 _reflns.B_iso_Wilson_estimate 32.80 _reflns.pdbx_redundancy 5.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.39 _reflns_shell.percent_possible_all 99.0 _reflns_shell.Rmerge_I_obs 0.58 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.10 _reflns_shell.pdbx_redundancy 5.8 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4UF1 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 9109 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.707 _refine.ls_d_res_high 2.300 _refine.ls_percent_reflns_obs 96.99 _refine.ls_R_factor_obs 0.1796 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1782 _refine.ls_R_factor_R_free 0.2059 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 446 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 48.7 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'RESIDUES FROM 1 AND 2 AND FROM 138 TO 155 ARE MISSING IN DPV022. IN BAK,THE RESIDUES 67 AND 68 AS WELL AS 91 AND 92' _refine.pdbx_starting_model DPV022_BIM _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.24 _refine.pdbx_overall_phase_error 22.37 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1272 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 1319 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 41.707 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 1289 'X-RAY DIFFRACTION' ? f_angle_d 0.732 ? ? 1731 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.135 ? ? 496 'X-RAY DIFFRACTION' ? f_chiral_restr 0.032 ? ? 200 'X-RAY DIFFRACTION' ? f_plane_restr 0.002 ? ? 218 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.3001 2.6329 2851 0.2057 98.00 0.2488 . . 153 . . 'X-RAY DIFFRACTION' . 2.6329 3.3169 2853 0.1962 97.00 0.2418 . . 140 . . 'X-RAY DIFFRACTION' . 3.3169 41.7140 2959 0.1619 96.00 0.1792 . . 153 . . # _struct.entry_id 4UF1 _struct.title 'Deerpox virus DPV022 in complex with Bak BH3' _struct.pdbx_descriptor 'ANTIAPOPTOTIC MEMBRANE PROTEIN, BCL-2 HOMOLOGOUS ANTAGONIST/KILLER' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4UF1 _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'VIRAL PROTEIN, DEERPOX VIRUS, APOPTOSIS, BCL-2, BAK BH3' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 20 ? LEU A 43 ? PHE A 7 LEU A 30 1 ? 24 HELX_P HELX_P2 2 ASN A 45 ? TYR A 66 ? ASN A 32 TYR A 53 1 ? 22 HELX_P HELX_P3 3 TYR A 66 ? ASN A 78 ? TYR A 53 ASN A 65 1 ? 13 HELX_P HELX_P4 4 THR A 83 ? ASP A 98 ? THR A 70 ASP A 85 1 ? 16 HELX_P HELX_P5 5 ARG A 100 ? TRP A 118 ? ARG A 87 TRP A 105 1 ? 19 HELX_P HELX_P6 6 ARG A 123 ? SER A 131 ? ARG A 110 SER A 118 1 ? 9 HELX_P HELX_P7 7 ASN A 132 ? ASN A 140 ? ASN A 119 ASN A 127 1 ? 9 HELX_P HELX_P8 8 ASN A 141 ? ASP A 150 ? ASN A 128 ASP A 137 1 ? 10 HELX_P HELX_P9 9 GLY B 6 ? TYR B 23 ? GLY B 72 TYR B 89 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SO4 _struct_site.pdbx_auth_seq_id 1138 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 1138' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASN A 45 ? ASN A 32 . ? 1_555 ? 2 AC1 3 ASN A 46 ? ASN A 33 . ? 1_555 ? 3 AC1 3 ASP A 147 ? ASP A 134 . ? 7_554 ? # _database_PDB_matrix.entry_id 4UF1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4UF1 _atom_sites.fract_transf_matrix[1][1] 0.010723 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010723 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021920 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -12 ? ? ? A . n A 1 2 GLY 2 -11 ? ? ? A . n A 1 3 SER 3 -10 ? ? ? A . n A 1 4 SER 4 -9 ? ? ? A . n A 1 5 HIS 5 -8 ? ? ? A . n A 1 6 HIS 6 -7 ? ? ? A . n A 1 7 HIS 7 -6 ? ? ? A . n A 1 8 HIS 8 -5 ? ? ? A . n A 1 9 HIS 9 -4 ? ? ? A . n A 1 10 HIS 10 -3 ? ? ? A . n A 1 11 SER 11 -2 ? ? ? A . n A 1 12 GLN 12 -1 ? ? ? A . n A 1 13 ASP 13 0 ? ? ? A . n A 1 14 MET 14 1 ? ? ? A . n A 1 15 GLU 15 2 ? ? ? A . n A 1 16 ALA 16 3 3 ALA ALA A . n A 1 17 ALA 17 4 4 ALA ALA A . n A 1 18 ILE 18 5 5 ILE ILE A . n A 1 19 GLU 19 6 6 GLU GLU A . n A 1 20 PHE 20 7 7 PHE PHE A . n A 1 21 ASP 21 8 8 ASP ASP A . n A 1 22 GLU 22 9 9 GLU GLU A . n A 1 23 ILE 23 10 10 ILE ILE A . n A 1 24 VAL 24 11 11 VAL VAL A . n A 1 25 LYS 25 12 12 LYS LYS A . n A 1 26 LYS 26 13 13 LYS LYS A . n A 1 27 LEU 27 14 14 LEU LEU A . n A 1 28 LEU 28 15 15 LEU LEU A . n A 1 29 ASN 29 16 16 ASN ASN A . n A 1 30 ILE 30 17 17 ILE ILE A . n A 1 31 TYR 31 18 18 TYR TYR A . n A 1 32 ILE 32 19 19 ILE ILE A . n A 1 33 ASN 33 20 20 ASN ASN A . n A 1 34 ASP 34 21 21 ASP ASP A . n A 1 35 ILE 35 22 22 ILE ILE A . n A 1 36 CYS 36 23 23 CYS CYS A . n A 1 37 THR 37 24 24 THR THR A . n A 1 38 THR 38 25 25 THR THR A . n A 1 39 GLY 39 26 26 GLY GLY A . n A 1 40 GLU 40 27 27 GLU GLU A . n A 1 41 LYS 41 28 28 LYS LYS A . n A 1 42 ARG 42 29 29 ARG ARG A . n A 1 43 LEU 43 30 30 LEU LEU A . n A 1 44 LEU 44 31 31 LEU LEU A . n A 1 45 ASN 45 32 32 ASN ASN A . n A 1 46 ASN 46 33 33 ASN ASN A . n A 1 47 TYR 47 34 34 TYR TYR A . n A 1 48 GLU 48 35 35 GLU GLU A . n A 1 49 LYS 49 36 36 LYS LYS A . n A 1 50 SER 50 37 37 SER SER A . n A 1 51 ILE 51 38 38 ILE ILE A . n A 1 52 LEU 52 39 39 LEU LEU A . n A 1 53 ASP 53 40 40 ASP ASP A . n A 1 54 ARG 54 41 41 ARG ARG A . n A 1 55 ILE 55 42 42 ILE ILE A . n A 1 56 TYR 56 43 43 TYR TYR A . n A 1 57 LYS 57 44 44 LYS LYS A . n A 1 58 SER 58 45 45 SER SER A . n A 1 59 CYS 59 46 46 CYS CYS A . n A 1 60 GLU 60 47 47 GLU GLU A . n A 1 61 TYR 61 48 48 TYR TYR A . n A 1 62 ILE 62 49 49 ILE ILE A . n A 1 63 LYS 63 50 50 LYS LYS A . n A 1 64 LYS 64 51 51 LYS LYS A . n A 1 65 ASN 65 52 52 ASN ASN A . n A 1 66 TYR 66 53 53 TYR TYR A . n A 1 67 GLU 67 54 54 GLU GLU A . n A 1 68 LEU 68 55 55 LEU LEU A . n A 1 69 ASP 69 56 56 ASP ASP A . n A 1 70 PHE 70 57 57 PHE PHE A . n A 1 71 ASN 71 58 58 ASN ASN A . n A 1 72 SER 72 59 59 SER SER A . n A 1 73 MET 73 60 60 MET MET A . n A 1 74 TYR 74 61 61 TYR TYR A . n A 1 75 ASN 75 62 62 ASN ASN A . n A 1 76 GLN 76 63 63 GLN GLN A . n A 1 77 ILE 77 64 64 ILE ILE A . n A 1 78 ASN 78 65 65 ASN ASN A . n A 1 79 ILE 79 66 66 ILE ILE A . n A 1 80 ASN 80 67 67 ASN ASN A . n A 1 81 ASN 81 68 68 ASN ASN A . n A 1 82 ILE 82 69 69 ILE ILE A . n A 1 83 THR 83 70 70 THR THR A . n A 1 84 THR 84 71 71 THR THR A . n A 1 85 SER 85 72 72 SER SER A . n A 1 86 ASP 86 73 73 ASP ASP A . n A 1 87 ILE 87 74 74 ILE ILE A . n A 1 88 LYS 88 75 75 LYS LYS A . n A 1 89 SER 89 76 76 SER SER A . n A 1 90 LYS 90 77 77 LYS LYS A . n A 1 91 ILE 91 78 78 ILE ILE A . n A 1 92 ILE 92 79 79 ILE ILE A . n A 1 93 GLU 93 80 80 GLU GLU A . n A 1 94 ALA 94 81 81 ALA ALA A . n A 1 95 LEU 95 82 82 LEU LEU A . n A 1 96 LEU 96 83 83 LEU LEU A . n A 1 97 ILE 97 84 84 ILE ILE A . n A 1 98 ASP 98 85 85 ASP ASP A . n A 1 99 SER 99 86 86 SER SER A . n A 1 100 ARG 100 87 87 ARG ARG A . n A 1 101 PRO 101 88 88 PRO PRO A . n A 1 102 SER 102 89 89 SER SER A . n A 1 103 VAL 103 90 90 VAL VAL A . n A 1 104 LYS 104 91 91 LYS LYS A . n A 1 105 LEU 105 92 92 LEU LEU A . n A 1 106 ALA 106 93 93 ALA ALA A . n A 1 107 THR 107 94 94 THR THR A . n A 1 108 LEU 108 95 95 LEU LEU A . n A 1 109 SER 109 96 96 SER SER A . n A 1 110 PHE 110 97 97 PHE PHE A . n A 1 111 ILE 111 98 98 ILE ILE A . n A 1 112 SER 112 99 99 SER SER A . n A 1 113 LEU 113 100 100 LEU LEU A . n A 1 114 ILE 114 101 101 ILE ILE A . n A 1 115 ALA 115 102 102 ALA ALA A . n A 1 116 GLU 116 103 103 GLU GLU A . n A 1 117 LYS 117 104 104 LYS LYS A . n A 1 118 TRP 118 105 105 TRP TRP A . n A 1 119 GLY 119 106 106 GLY GLY A . n A 1 120 GLU 120 107 107 GLU GLU A . n A 1 121 LYS 121 108 108 LYS LYS A . n A 1 122 ASN 122 109 109 ASN ASN A . n A 1 123 ARG 123 110 110 ARG ARG A . n A 1 124 ALA 124 111 111 ALA ALA A . n A 1 125 LYS 125 112 112 LYS LYS A . n A 1 126 ILE 126 113 113 ILE ILE A . n A 1 127 MET 127 114 114 MET MET A . n A 1 128 GLU 128 115 115 GLU GLU A . n A 1 129 ILE 129 116 116 ILE ILE A . n A 1 130 LEU 130 117 117 LEU LEU A . n A 1 131 SER 131 118 118 SER SER A . n A 1 132 ASN 132 119 119 ASN ASN A . n A 1 133 GLU 133 120 120 GLU GLU A . n A 1 134 ILE 134 121 121 ILE ILE A . n A 1 135 VAL 135 122 122 VAL VAL A . n A 1 136 GLU 136 123 123 GLU GLU A . n A 1 137 LYS 137 124 124 LYS LYS A . n A 1 138 ILE 138 125 125 ILE ILE A . n A 1 139 SER 139 126 126 SER SER A . n A 1 140 ASN 140 127 127 ASN ASN A . n A 1 141 ASN 141 128 128 ASN ASN A . n A 1 142 GLY 142 129 129 GLY GLY A . n A 1 143 LYS 143 130 130 LYS LYS A . n A 1 144 ASP 144 131 131 ASP ASP A . n A 1 145 PHE 145 132 132 PHE PHE A . n A 1 146 ILE 146 133 133 ILE ILE A . n A 1 147 ASP 147 134 134 ASP ASP A . n A 1 148 PHE 148 135 135 PHE PHE A . n A 1 149 ILE 149 136 136 ILE ILE A . n A 1 150 ASP 150 137 137 ASP ASP A . n A 1 151 ARG 151 138 ? ? ? A . n A 1 152 ASP 152 139 ? ? ? A . n A 1 153 ASP 153 140 ? ? ? A . n A 1 154 ASP 154 141 ? ? ? A . n A 1 155 ASP 155 142 ? ? ? A . n A 1 156 ILE 156 143 ? ? ? A . n A 1 157 VAL 157 144 ? ? ? A . n A 1 158 ASP 158 145 ? ? ? A . n A 1 159 ASP 159 146 ? ? ? A . n A 1 160 TYR 160 147 ? ? ? A . n A 1 161 VAL 161 148 ? ? ? A . n A 1 162 LEU 162 149 ? ? ? A . n A 1 163 ILE 163 150 ? ? ? A . n A 1 164 THR 164 151 ? ? ? A . n A 1 165 ASN 165 152 ? ? ? A . n A 1 166 TYR 166 153 ? ? ? A . n A 1 167 LEU 167 154 ? ? ? A . n A 1 168 LYS 168 155 ? ? ? A . n B 2 1 PRO 1 67 ? ? ? B . n B 2 2 SER 2 68 ? ? ? B . n B 2 3 SER 3 69 69 SER SER B . n B 2 4 THR 4 70 70 THR THR B . n B 2 5 MET 5 71 71 MET MET B . n B 2 6 GLY 6 72 72 GLY GLY B . n B 2 7 GLN 7 73 73 GLN GLN B . n B 2 8 VAL 8 74 74 VAL VAL B . n B 2 9 GLY 9 75 75 GLY GLY B . n B 2 10 ARG 10 76 76 ARG ARG B . n B 2 11 GLN 11 77 77 GLN GLN B . n B 2 12 LEU 12 78 78 LEU LEU B . n B 2 13 ALA 13 79 79 ALA ALA B . n B 2 14 ILE 14 80 80 ILE ILE B . n B 2 15 ILE 15 81 81 ILE ILE B . n B 2 16 GLY 16 82 82 GLY GLY B . n B 2 17 ASP 17 83 83 ASP ASP B . n B 2 18 ASP 18 84 84 ASP ASP B . n B 2 19 ILE 19 85 85 ILE ILE B . n B 2 20 ASN 20 86 86 ASN ASN B . n B 2 21 ARG 21 87 87 ARG ARG B . n B 2 22 ARG 22 88 88 ARG ARG B . n B 2 23 TYR 23 89 89 TYR TYR B . n B 2 24 ASP 24 90 90 ASP ASP B . n B 2 25 SER 25 91 ? ? ? B . n B 2 26 GLU 26 92 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 1138 1138 SO4 SO4 A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . E 4 HOH 1 2001 2001 HOH HOH B . E 4 HOH 2 2002 2002 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9000 ? 1 MORE -84.5 ? 1 'SSA (A^2)' 15450 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2008 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-08-05 2 'Structure model' 1 1 2015-08-12 3 'Structure model' 1 2 2015-08-19 4 'Structure model' 2 0 2019-10-23 5 'Structure model' 2 1 2021-06-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' Other 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Source and taxonomy' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' pdbx_database_status 3 5 'Structure model' entity 4 5 'Structure model' entity_name_com 5 5 'Structure model' entity_src_gen 6 5 'Structure model' pdbx_entity_src_syn 7 5 'Structure model' struct_ref 8 5 'Structure model' struct_ref_seq_dif 9 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_pdbx_database_status.status_code_sf' 6 5 'Structure model' '_entity.pdbx_description' 7 5 'Structure model' '_entity_name_com.name' 8 5 'Structure model' '_entity_src_gen.gene_src_common_name' 9 5 'Structure model' '_entity_src_gen.gene_src_strain' 10 5 'Structure model' '_entity_src_gen.pdbx_beg_seq_num' 11 5 'Structure model' '_entity_src_gen.pdbx_end_seq_num' 12 5 'Structure model' '_entity_src_gen.pdbx_gene_src_gene' 13 5 'Structure model' '_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id' 14 5 'Structure model' '_entity_src_gen.pdbx_gene_src_scientific_name' 15 5 'Structure model' '_entity_src_gen.pdbx_host_org_scientific_name' 16 5 'Structure model' '_entity_src_gen.pdbx_host_org_strain' 17 5 'Structure model' '_entity_src_gen.pdbx_seq_type' 18 5 'Structure model' '_entity_src_gen.plasmid_name' 19 5 'Structure model' '_pdbx_entity_src_syn.organism_common_name' 20 5 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 21 5 'Structure model' '_pdbx_entity_src_syn.pdbx_beg_seq_num' 22 5 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 23 5 'Structure model' '_struct_ref.pdbx_align_begin' 24 5 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' 25 5 'Structure model' '_struct_ref_seq_dif.details' 26 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 27 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 28 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -12.0630 -18.7500 8.3895 0.2954 0.2207 0.2097 0.0669 0.0136 -0.0324 2.6281 1.3058 2.1623 0.0095 -0.2805 -0.6035 0.1698 0.1201 -0.0881 0.0730 -0.0762 0.0779 0.2045 0.1955 -0.0256 'X-RAY DIFFRACTION' 2 ? refined -14.8096 -3.5885 -11.2717 0.1948 0.2306 0.2017 -0.0243 0.0056 -0.0075 4.9616 4.4305 4.9795 -2.8981 -1.7708 1.6530 0.0627 -0.3638 0.3797 -0.2335 0.1124 -0.1183 -0.3080 0.5746 0.0623 'X-RAY DIFFRACTION' 3 ? refined -29.6476 -7.5456 -6.4159 0.2311 0.2625 0.3712 0.0507 0.0300 -0.0025 2.5309 2.6683 3.9467 -0.8648 0.5259 -0.0234 -0.0795 -0.0726 -0.1236 0.2657 0.0744 0.6216 0.0488 -0.2603 -0.0360 'X-RAY DIFFRACTION' 4 ? refined -34.0207 3.5549 -12.4463 0.4887 0.4041 0.4542 0.1692 -0.0415 -0.0547 5.2604 4.5652 5.6576 0.7429 0.1807 -1.4622 0.3773 0.4045 0.2132 -0.1628 -0.7232 0.3540 -0.9461 -0.6826 0.0359 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;CHAIN 'A' AND (RESID 3 THROUGH 30 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;CHAIN 'A' AND (RESID 31 THROUGH 52 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;CHAIN 'A' AND (RESID 53 THROUGH 137 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;CHAIN 'B' AND (RESID 69 THROUGH 90 ) ; # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 iMOSFLM 'data reduction' . ? 2 Aimless 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 4UF1 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'STRUCTURE FROM CONSTRUCT RESIDUES 1-155' _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 105 ? ? -100.31 44.28 2 1 ASN A 119 ? ? 64.94 -106.35 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -12 ? A MET 1 2 1 Y 1 A GLY -11 ? A GLY 2 3 1 Y 1 A SER -10 ? A SER 3 4 1 Y 1 A SER -9 ? A SER 4 5 1 Y 1 A HIS -8 ? A HIS 5 6 1 Y 1 A HIS -7 ? A HIS 6 7 1 Y 1 A HIS -6 ? A HIS 7 8 1 Y 1 A HIS -5 ? A HIS 8 9 1 Y 1 A HIS -4 ? A HIS 9 10 1 Y 1 A HIS -3 ? A HIS 10 11 1 Y 1 A SER -2 ? A SER 11 12 1 Y 1 A GLN -1 ? A GLN 12 13 1 Y 1 A ASP 0 ? A ASP 13 14 1 Y 1 A MET 1 ? A MET 14 15 1 Y 1 A GLU 2 ? A GLU 15 16 1 Y 1 A ARG 138 ? A ARG 151 17 1 Y 1 A ASP 139 ? A ASP 152 18 1 Y 1 A ASP 140 ? A ASP 153 19 1 Y 1 A ASP 141 ? A ASP 154 20 1 Y 1 A ASP 142 ? A ASP 155 21 1 Y 1 A ILE 143 ? A ILE 156 22 1 Y 1 A VAL 144 ? A VAL 157 23 1 Y 1 A ASP 145 ? A ASP 158 24 1 Y 1 A ASP 146 ? A ASP 159 25 1 Y 1 A TYR 147 ? A TYR 160 26 1 Y 1 A VAL 148 ? A VAL 161 27 1 Y 1 A LEU 149 ? A LEU 162 28 1 Y 1 A ILE 150 ? A ILE 163 29 1 Y 1 A THR 151 ? A THR 164 30 1 Y 1 A ASN 152 ? A ASN 165 31 1 Y 1 A TYR 153 ? A TYR 166 32 1 Y 1 A LEU 154 ? A LEU 167 33 1 Y 1 A LYS 155 ? A LYS 168 34 1 Y 1 B PRO 67 ? B PRO 1 35 1 Y 1 B SER 68 ? B SER 2 36 1 Y 1 B SER 91 ? B SER 25 37 1 Y 1 B GLU 92 ? B GLU 26 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH #