HEADER HYDROLASE 23-DEC-14 4UF5 TITLE CRYSTAL STRUCTURE OF UCH-L5 IN COMPLEX WITH INHIBITORY FRAGMENT OF TITLE 2 INO80G COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UCH-L5, UBIQUITIN C-TERMINAL HYDROLASE UCH37, UBIQUITIN COMPND 5 THIOESTERASE L5, UCH-L5; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: ISOFORM 3; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR FACTOR RELATED TO KAPPA-B-BINDING PROTEIN; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: DEUBAD DOMAIN, RESIDUES 40-170; COMPND 13 SYNONYM: DNA-BINDING PROTEIN R KAPPA-B, INO80 COMPLEX SUBUNIT G, INO COMPND 14 80G; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX VECTOR; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-NKI-3C-LIC; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 19 EXPRESSION_SYSTEM_VECTOR: PET VECTOR; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET-NKI-HIS-3C-LIC KEYWDS HYDROLASE, DEUBIQUITINATING ENZYME EXPDTA X-RAY DIFFRACTION AUTHOR D.D.SAHTOE,W.J.VAN DIJK,F.EL OUALID,R.EKKEBUS,H.OVAA,T.K.SIXMA REVDAT 5 20-DEC-23 4UF5 1 REMARK REVDAT 4 03-APR-19 4UF5 1 REMARK REVDAT 3 06-SEP-17 4UF5 1 REMARK REVDAT 2 25-MAR-15 4UF5 1 JRNL REVDAT 1 04-MAR-15 4UF5 0 JRNL AUTH D.D.SAHTOE,W.J.VAN DIJK,F.EL OUALID,R.EKKEBUS,H.OVAA, JRNL AUTH 2 T.K.SIXMA JRNL TITL MECHANISM OF UCH-L5 ACTIVATION AND INHIBITION BY DEUBAD JRNL TITL 2 DOMAINS IN RPN13 AND INO80G. JRNL REF MOL.CELL V. 57 887 2015 JRNL REFN ISSN 1097-2765 JRNL PMID 25702870 JRNL DOI 10.1016/J.MOLCEL.2014.12.039 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 6223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.312 REMARK 3 R VALUE (WORKING SET) : 0.307 REMARK 3 FREE R VALUE : 0.357 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.600 REMARK 3 FREE R VALUE TEST SET COUNT : 737 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 456 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.3850 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.4340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.84000 REMARK 3 B22 (A**2) : 0.84000 REMARK 3 B33 (A**2) : -1.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.998 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.978 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 157.884 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.861 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.786 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3364 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3220 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4531 ; 0.728 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7403 ; 0.654 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 399 ; 4.273 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;30.392 ;24.917 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 617 ;13.470 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;10.036 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 485 ; 0.042 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3824 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 814 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 320 REMARK 3 ORIGIN FOR THE GROUP (A): -21.8430 33.6260 -5.3450 REMARK 3 T TENSOR REMARK 3 T11: 0.0735 T22: 0.1823 REMARK 3 T33: 0.1228 T12: 0.0364 REMARK 3 T13: 0.0457 T23: 0.1089 REMARK 3 L TENSOR REMARK 3 L11: 1.9171 L22: 1.7032 REMARK 3 L33: 1.5470 L12: -0.1394 REMARK 3 L13: -0.4253 L23: 0.2186 REMARK 3 S TENSOR REMARK 3 S11: 0.1309 S12: 0.0920 S13: 0.1268 REMARK 3 S21: 0.1611 S22: -0.0489 S23: -0.2110 REMARK 3 S31: -0.1529 S32: 0.2584 S33: -0.0819 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): -28.0990 16.1500 2.7330 REMARK 3 T TENSOR REMARK 3 T11: 0.3177 T22: 0.1948 REMARK 3 T33: 0.2723 T12: -0.0831 REMARK 3 T13: -0.0066 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 2.4055 L22: 6.7964 REMARK 3 L33: 1.6430 L12: -2.7003 REMARK 3 L13: -0.6510 L23: -0.9743 REMARK 3 S TENSOR REMARK 3 S11: -0.1953 S12: 0.2360 S13: -0.4955 REMARK 3 S21: 0.0397 S22: -0.1753 S23: -0.0945 REMARK 3 S31: 0.5586 S32: -0.0783 S33: 0.3706 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4UF5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1290062647. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.911650 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7004 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.700 REMARK 200 RESOLUTION RANGE LOW (A) : 47.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.21000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3IHR REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 9.0, 200 MM LITHIUM REMARK 280 CHLORIDE, 17% PEG 8000. 4 DEGREES CELSIUS, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.28800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.14400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 99.43200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.28800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 99.43200 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.14400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 ASN A 4 REMARK 465 ALA A 5 REMARK 465 MET A 148 REMARK 465 PHE A 149 REMARK 465 GLU A 150 REMARK 465 PHE A 151 REMARK 465 ASP A 152 REMARK 465 THR A 153 REMARK 465 LYS A 154 REMARK 465 THR A 155 REMARK 465 SER A 156 REMARK 465 ALA A 157 REMARK 465 LYS A 158 REMARK 465 GLU A 159 REMARK 465 GLU A 244 REMARK 465 GLU A 245 REMARK 465 PRO A 246 REMARK 465 MET A 247 REMARK 465 ASP A 248 REMARK 465 THR A 249 REMARK 465 ASP A 250 REMARK 465 GLN A 251 REMARK 465 GLY A 252 REMARK 465 ASN A 253 REMARK 465 ALA A 321 REMARK 465 LYS A 322 REMARK 465 LYS A 323 REMARK 465 ALA A 324 REMARK 465 GLN A 325 REMARK 465 GLU A 326 REMARK 465 THR A 327 REMARK 465 LYS A 328 REMARK 465 GLY B 37 REMARK 465 PRO B 38 REMARK 465 GLY B 39 REMARK 465 GLU B 40 REMARK 465 ASP B 41 REMARK 465 LEU B 42 REMARK 465 LEU B 43 REMARK 465 ARG B 154 REMARK 465 SER B 155 REMARK 465 ASP B 156 REMARK 465 LEU B 157 REMARK 465 LEU B 158 REMARK 465 GLU B 159 REMARK 465 MET B 160 REMARK 465 ALA B 161 REMARK 465 ARG B 162 REMARK 465 ARG B 163 REMARK 465 SER B 164 REMARK 465 GLY B 165 REMARK 465 PRO B 166 REMARK 465 ALA B 167 REMARK 465 LEU B 168 REMARK 465 PRO B 169 REMARK 465 PHE B 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 86 -24.04 77.07 REMARK 500 SER A 133 108.80 -59.06 REMARK 500 ASP B 45 80.87 -160.63 REMARK 500 PHE B 73 74.23 -153.43 REMARK 500 PHE B 98 -64.63 -121.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 ISOFORM 3 OF UCH-L5 HAS BEEN CRYSTALLIZED DBREF 4UF5 A 1 328 UNP Q9Y5K5 UCHL5_HUMAN 1 328 DBREF 4UF5 B 40 170 UNP Q6P4R8 NFRKB_HUMAN 40 170 SEQADV 4UF5 GLY A -2 UNP Q9Y5K5 EXPRESSION TAG SEQADV 4UF5 PRO A -1 UNP Q9Y5K5 EXPRESSION TAG SEQADV 4UF5 GLY A 0 UNP Q9Y5K5 EXPRESSION TAG SEQADV 4UF5 GLY B 37 UNP Q6P4R8 EXPRESSION TAG SEQADV 4UF5 PRO B 38 UNP Q6P4R8 EXPRESSION TAG SEQADV 4UF5 GLY B 39 UNP Q6P4R8 EXPRESSION TAG SEQRES 1 A 331 GLY PRO GLY MET THR GLY ASN ALA GLY GLU TRP CYS LEU SEQRES 2 A 331 MET GLU SER ASP PRO GLY VAL PHE THR GLU LEU ILE LYS SEQRES 3 A 331 GLY PHE GLY CYS ARG GLY ALA GLN VAL GLU GLU ILE TRP SEQRES 4 A 331 SER LEU GLU PRO GLU ASN PHE GLU LYS LEU LYS PRO VAL SEQRES 5 A 331 HIS GLY LEU ILE PHE LEU PHE LYS TRP GLN PRO GLY GLU SEQRES 6 A 331 GLU PRO ALA GLY SER VAL VAL GLN ASP SER ARG LEU ASP SEQRES 7 A 331 THR ILE PHE PHE ALA LYS GLN VAL ILE ASN ASN ALA CYS SEQRES 8 A 331 ALA THR GLN ALA ILE VAL SER VAL LEU LEU ASN CYS THR SEQRES 9 A 331 HIS GLN ASP VAL HIS LEU GLY GLU THR LEU SER GLU PHE SEQRES 10 A 331 LYS GLU PHE SER GLN SER PHE ASP ALA ALA MET LYS GLY SEQRES 11 A 331 LEU ALA LEU SER ASN SER ASP VAL ILE ARG GLN VAL HIS SEQRES 12 A 331 ASN SER PHE ALA ARG GLN GLN MET PHE GLU PHE ASP THR SEQRES 13 A 331 LYS THR SER ALA LYS GLU GLU ASP ALA PHE HIS PHE VAL SEQRES 14 A 331 SER TYR VAL PRO VAL ASN GLY ARG LEU TYR GLU LEU ASP SEQRES 15 A 331 GLY LEU ARG GLU GLY PRO ILE ASP LEU GLY ALA CYS ASN SEQRES 16 A 331 GLN ASP ASP TRP ILE SER ALA VAL ARG PRO VAL ILE GLU SEQRES 17 A 331 LYS ARG ILE GLN LYS TYR SER GLU GLY GLU ILE ARG PHE SEQRES 18 A 331 ASN LEU MET ALA ILE VAL SER ASP ARG LYS MET ILE TYR SEQRES 19 A 331 GLU GLN LYS ILE ALA GLU LEU GLN ARG GLN LEU ALA GLU SEQRES 20 A 331 GLU PRO MET ASP THR ASP GLN GLY ASN SER MET LEU SER SEQRES 21 A 331 ALA ILE GLN SER GLU VAL ALA LYS ASN GLN MET LEU ILE SEQRES 22 A 331 GLU GLU GLU VAL GLN LYS LEU LYS ARG TYR LYS ILE GLU SEQRES 23 A 331 ASN ILE ARG ARG LYS HIS ASN TYR LEU PRO PHE ILE MET SEQRES 24 A 331 GLU LEU LEU LYS THR LEU ALA GLU HIS GLN GLN LEU ILE SEQRES 25 A 331 PRO LEU VAL GLU LYS ALA LYS GLU LYS GLN ASN ALA LYS SEQRES 26 A 331 LYS ALA GLN GLU THR LYS SEQRES 1 B 134 GLY PRO GLY GLU ASP LEU LEU GLU ASP PRO GLU ILE PHE SEQRES 2 B 134 PHE ASP VAL VAL SER LEU SER THR TRP GLN GLU VAL LEU SEQRES 3 B 134 SER ASP SER GLN ARG GLU HIS LEU GLN GLN PHE LEU PRO SEQRES 4 B 134 GLN PHE PRO GLU ASP SER ALA GLU GLN GLN ASN GLU LEU SEQRES 5 B 134 ILE LEU ALA LEU PHE SER GLY GLU ASN PHE ARG PHE GLY SEQRES 6 B 134 ASN PRO LEU HIS ILE ALA GLN LYS LEU PHE ARG ASP GLY SEQRES 7 B 134 HIS PHE ASN PRO GLU VAL VAL LYS TYR ARG GLN LEU CYS SEQRES 8 B 134 PHE LYS SER GLN TYR LYS ARG TYR LEU ASN SER GLN GLN SEQRES 9 B 134 GLN TYR PHE HIS ARG LEU LEU LYS GLN ILE LEU ALA SER SEQRES 10 B 134 ARG SER ASP LEU LEU GLU MET ALA ARG ARG SER GLY PRO SEQRES 11 B 134 ALA LEU PRO PHE HELIX 1 1 ASP A 14 PHE A 25 1 12 HELIX 2 2 GLU A 39 LYS A 45 1 7 HELIX 3 3 SER A 72 ILE A 77 1 6 HELIX 4 4 ALA A 87 LEU A 98 1 12 HELIX 5 5 GLY A 108 SER A 118 1 11 HELIX 6 6 ASP A 122 SER A 133 1 12 HELIX 7 7 SER A 133 GLN A 146 1 14 HELIX 8 8 TRP A 196 GLU A 215 1 20 HELIX 9 9 ASP A 226 GLU A 232 1 7 HELIX 10 10 GLN A 233 ALA A 243 1 11 HELIX 11 11 MET A 255 HIS A 289 1 35 HELIX 12 12 TYR A 291 HIS A 305 1 15 HELIX 13 13 GLN A 307 ASN A 320 1 14 HELIX 14 14 GLU B 47 VAL B 61 1 15 HELIX 15 15 SER B 63 HIS B 69 1 7 HELIX 16 16 HIS B 69 LEU B 74 1 6 HELIX 17 17 ASP B 80 SER B 94 1 15 HELIX 18 18 ASN B 102 ASP B 113 1 12 HELIX 19 19 ASN B 117 SER B 153 1 37 SHEET 1 AA 6 ALA A 30 GLU A 34 0 SHEET 2 AA 6 PHE A 218 SER A 225 -1 O ALA A 222 N GLU A 33 SHEET 3 AA 6 VAL A 49 PHE A 56 -1 N HIS A 50 O ILE A 223 SHEET 4 AA 6 HIS A 164 VAL A 171 -1 O HIS A 164 N PHE A 56 SHEET 5 AA 6 ARG A 174 ASP A 179 -1 O ARG A 174 N VAL A 171 SHEET 6 AA 6 ILE A 186 ALA A 190 -1 O ILE A 186 N GLU A 177 CISPEP 1 LYS A 47 PRO A 48 0 -3.72 CRYST1 95.302 95.302 132.576 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010493 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010493 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007543 0.00000