HEADER OXIDOREDUCTASE 22-MAR-15 4UGQ TITLE STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH TITLE 2 N,N''-(((2S)-3-AMINOPROPANE-1,2-DIYL)BIS(OXYMETHANEDIYLBENZENE-3,1- TITLE 3 DIYL))DITHIOPHENE-2-CARBOXIMIDAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRIC OXIDE SYNTHASE OXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NOSOXY-LIKE PROTEIN, NITRIC OXIDE SYNTHASE; COMPND 5 EC: 1.14.13.165; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 ATCC: 23857; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS OXIDOREDUCTASE, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR J.K.HOLDEN,T.L.POULOS REVDAT 5 10-JAN-24 4UGQ 1 REMARK REVDAT 4 06-FEB-19 4UGQ 1 REMARK REVDAT 3 30-JAN-19 4UGQ 1 REMARK REVDAT 2 22-JUL-15 4UGQ 1 JRNL REVDAT 1 24-JUN-15 4UGQ 0 JRNL AUTH J.K.HOLDEN,D.DEJAM,M.C.LEWIS,H.HUANG,S.KANG,Q.JING,F.XUE, JRNL AUTH 2 R.B.SILVERMAN,T.L.POULOS JRNL TITL INHIBITOR BOUND CRYSTAL STRUCTURES OF BACTERIAL NITRIC OXIDE JRNL TITL 2 SYNTHASE. JRNL REF BIOCHEMISTRY V. 54 4075 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26062720 JRNL DOI 10.1021/ACS.BIOCHEM.5B00431 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 42099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9517 - 4.5601 0.99 2813 155 0.1699 0.2023 REMARK 3 2 4.5601 - 3.6204 0.99 2721 149 0.1375 0.1577 REMARK 3 3 3.6204 - 3.1630 1.00 2701 140 0.1510 0.1715 REMARK 3 4 3.1630 - 2.8739 1.00 2689 128 0.1569 0.1750 REMARK 3 5 2.8739 - 2.6680 1.00 2703 126 0.1595 0.2376 REMARK 3 6 2.6680 - 2.5107 1.00 2647 142 0.1602 0.1888 REMARK 3 7 2.5107 - 2.3850 1.00 2630 166 0.1600 0.1932 REMARK 3 8 2.3850 - 2.2812 1.00 2629 154 0.1699 0.2185 REMARK 3 9 2.2812 - 2.1934 1.00 2620 151 0.1765 0.2092 REMARK 3 10 2.1934 - 2.1177 1.00 2648 134 0.1825 0.2330 REMARK 3 11 2.1177 - 2.0515 1.00 2664 127 0.1948 0.2291 REMARK 3 12 2.0515 - 1.9929 1.00 2641 132 0.2053 0.2259 REMARK 3 13 1.9929 - 1.9404 1.00 2616 149 0.2183 0.2533 REMARK 3 14 1.9404 - 1.8931 0.99 2607 150 0.2491 0.3021 REMARK 3 15 1.8931 - 1.8500 0.99 2604 163 0.2792 0.3177 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3146 REMARK 3 ANGLE : 1.424 4276 REMARK 3 CHIRALITY : 0.082 438 REMARK 3 PLANARITY : 0.005 547 REMARK 3 DIHEDRAL : 13.752 1171 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 5.8220 19.7284 22.9353 REMARK 3 T TENSOR REMARK 3 T11: 0.1813 T22: 0.1714 REMARK 3 T33: 0.2048 T12: -0.0148 REMARK 3 T13: 0.0082 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 0.7570 L22: 1.4220 REMARK 3 L33: 0.9098 L12: 0.1912 REMARK 3 L13: 0.1077 L23: -0.2042 REMARK 3 S TENSOR REMARK 3 S11: -0.0637 S12: 0.1230 S13: 0.0549 REMARK 3 S21: -0.2150 S22: 0.0694 S23: -0.0394 REMARK 3 S31: -0.1089 S32: 0.0527 S33: -0.0070 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1290063325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42211 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 37.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 1.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4D3T REMARK 200 REMARK 200 REMARK: CC ONE HALF FOR HIGH RESOLUTION SHELL AT 0.581. CC ONE REMARK 200 HALF FOR FULL DATA SET AT 0.992 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60 MM BIS-TRIS METHANE, 40 MM CITRIC REMARK 280 ACID, 20% PEG3350, 1.9% 1-PROPANOL, PH 7.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.41500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.41500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2228 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 117 -73.11 -99.66 REMARK 500 LYS A 118 57.96 -115.19 REMARK 500 ASP A 139 11.98 39.58 REMARK 500 ALA A 233 71.85 -155.78 REMARK 500 ARG A 247 -66.70 -128.04 REMARK 500 ARG A 254 -125.35 -114.71 REMARK 500 ALA A 269 51.10 -118.04 REMARK 500 SER A 335 50.00 37.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2073 DISTANCE = 6.03 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 66 SG REMARK 620 2 HEM A 901 NA 97.6 REMARK 620 3 HEM A 901 NB 94.0 86.4 REMARK 620 4 HEM A 901 NC 96.4 165.8 89.8 REMARK 620 5 HEM A 901 ND 101.5 88.6 164.2 91.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H4B A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 7LN A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 906 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UG5 RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-(2-(5-(2-(2-AMINO-6-METHYLPYRIDIN- 4-YL)ETHYL)PYRIDIN-3-YL) REMARK 900 ETHYL)-4-METHYLPYRIDIN-2- AMINE REMARK 900 RELATED ID: 4UG6 RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-(PYRIDINE-3,5-DIYLDIETHANE-2,1- DIYL)BIS(4-METHYLPYRIDIN- REMARK 900 2-AMINE) REMARK 900 RELATED ID: 4UG7 RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 3,5-BIS(2-(6-AMINO-4-METHYLPYRIDIN- 2-YL)ETHYL)BENZONITRILE REMARK 900 RELATED ID: 4UG8 RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-(5-((3R,4R)-4-((6-AZANYL-4-METHYL -PYRIDIN-2-YL)METHYL) REMARK 900 PYRROLIDIN-3-YL)OXYPENTYL)-4- METHYL-PYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UG9 RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-((4-(3-AMINOPROPYL)BENZENE-1,3- DIYL)DIETHANE-2,1-DIYL) REMARK 900 BIS(4-METHYLPYRIDIN-2-AMINE) REMARK 900 RELATED ID: 4UGA RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-((3-(((2-(3-FLUOROPHENYL)ETHYL)AMINO )METHYL)PHENOXY)METHYL)- REMARK 900 4-METHYLPYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UGB RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-(((5-(((2-(3-FLUOROPHENYL)ETHYL)AMINO )METHYL)PYRIDIN-3-YL) REMARK 900 OXY)METHYL)-4-METHYLPYRIDIN-2- AMINE REMARK 900 RELATED ID: 4UGC RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-(((2S)-3-AMINOPROPANE-1,2-DIYL) BIS(OXYMETHANEDIYL))BIS(4- REMARK 900 METHYLPYRIDIN-2-AMINE) REMARK 900 RELATED ID: 4UGD RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-((((2S)-1-AMINO-4-((6-AMINO-4- METHYLPYRIDIN-2-YL)METHOXY) REMARK 900 BUTAN-2-YL)OXY)METHYL)-4 -METHYLPYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UGE RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 4-METHYL-6-((3-(PIPERIDIN-4-YLMETHOXY) PHENOXY)METHYL)PYRIDIN- REMARK 900 2-AMINE REMARK 900 RELATED ID: 4UGF RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-((((3S, 5R)-5-(((6-AMINO-4- METHYLPYRIDIN-2-YL)METHOXY) REMARK 900 METHYL)PYRROLIDIN-3-YL)OXY )METHYL)-4-METHYLPYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UGG RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH (R)-6-(2-AMINO-2-(3-(2-(6-AMINO-4 -METHYLPYRIDIN-2-YL)ETHYL) REMARK 900 PHENYL)ETHYL)-4-METHYLPYRIDIN -2-AMINE REMARK 900 RELATED ID: 4UGH RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N1-(3-(2-(6-AMINO-4-METHYLPYRIDIN-2- YL)ETHYL)PHENYL)-N1,N2- REMARK 900 DIMETHYLETHANE-1,2-DIAMINE REMARK 900 RELATED ID: 4UGI RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N1-(6-(2-(6-AMINO-4-METHYLPYRIDIN-2- YL)ETHYL)PYRIDIN-2-YL)-N1, REMARK 900 N2-DIMETHYLETHANE-1,2- DIAMINE REMARK 900 RELATED ID: 4UGJ RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 3-(2-(6-AMINO-4-METHYLPYRIDIN-2-YL) ETHYL)-5-(METHYL(2- REMARK 900 (METHYLAMINO)ETHYL)AMINO)BENZONITRILE REMARK 900 RELATED ID: 4UGK RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-(2-(5-(2-(DIMETHYLAMINO)ETHYL)PYRIDIN -3-YL)ETHYL)-4- REMARK 900 METHYLPYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UGL RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N1-(3-(2-(6-AMINO-4-METHYLPYRIDIN-2- YL)ETHYL)-5-FLUOROPHENYL)- REMARK 900 N1-CYCLOPROPYL-N2-METHYLETHANE -1,2-DIAMINE REMARK 900 RELATED ID: 4UGM RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N,N'-(ETHANE-1,2-DIYLDIBENZENE-3,1- DIYL)DITHIOPHENE-2- REMARK 900 CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGN RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH (S)-N-(3-(((PYRROLIDIN-2-YLMETHYL)AMINO )METHYL)PHENYL) REMARK 900 THIOPHENE-2-CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGO RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N-(4-(2-(ETHYL(3-(((E)-IMINO(THIOPHEN -2-YL)METHYL)AMINO) REMARK 900 BENZYL)AMINO)ETHYL)PHENYL) THIOPHENE-2-CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGP RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N',N'-(((2R)-3-AMINOPROPANE-1,2-DIYL ) REMARK 900 BIS(OXYMETHANEDIYLBENZENE-3,1-DIYL))DITHIOPHENE-2- CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGR RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N-(3-(((2S,4S)-4-((3-((C-THIOPHEN-2 -YLCARBONIMIDOYL)AMINO) REMARK 900 PHENYL)METHOXY)PYRROLIDIN-2-YL) METHOXYMETHYL)PHENYL)THIOPHENE-2- REMARK 900 CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGS RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N,N'-(ETHANE-1,2-DIYLBIS(OXYBENZENE-3 ,1-DIYL))DITHIOPHENE-2- REMARK 900 CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGT RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N-(3-((PYRROLIDIN-3-YLOXY)METHYL)PHENYL )THIOPHENE-2- REMARK 900 CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGU RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N'-(4-(((2S,4R)-4-(3-((C-THIOPHEN-2 -YLCARBONIMIDOYL)AMINO) REMARK 900 PHENOXY)PYRROLIDIN-2-YL)METHOXY) PHENYL)THIOPHENE-2-CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGV RELATED DB: PDB REMARK 900 STRUCTURE OF Y357F BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN REMARK 900 COMPLEX WITH ARGININE AND 5,6,7,8- TETRAHYDROBIOPTERIN REMARK 900 RELATED ID: 4UGW RELATED DB: PDB REMARK 900 STRUCTURE OF Y357F BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN REMARK 900 COMPLEX WITH 6-(5-((3R,4R)-4-((6- AZANYL-4-METHYL-PYRIDIN-2-YL) REMARK 900 METHYL)PYRROLIDIN-3-YL )OXYPENTYL)-4-METHYL-PYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UGX RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N-(3-((ETHYL(2-(3-FLUOROPHENYL)ETHYL) AMINO)METHYL)PHENYL) REMARK 900 THIOPHENE-2-CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGY RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N1-(5-(2-(6-AMINO-4-METHYLPYRIDIN-2- YL)ETHYL)PYRIDIN-3-YL)-N1, REMARK 900 N2-DIMETHYLETHANE-1,2- DIAMINE REMARK 999 REMARK 999 SEQUENCE REMARK 999 E25A, E26A, E316A INTRODUCED DBREF 4UGQ A 1 363 UNP O34453 NOSO_BACSU 1 363 SEQADV 4UGQ ALA A 25 UNP O34453 GLU 25 ENGINEERED MUTATION SEQADV 4UGQ ALA A 26 UNP O34453 GLU 26 ENGINEERED MUTATION SEQADV 4UGQ ALA A 316 UNP O34453 GLU 316 ENGINEERED MUTATION SEQRES 1 A 363 MET GLU GLU LYS GLU ILE LEU TRP ASN GLU ALA LYS ALA SEQRES 2 A 363 PHE ILE ALA ALA CYS TYR GLN GLU LEU GLY LYS ALA ALA SEQRES 3 A 363 GLU VAL LYS ASP ARG LEU ALA ASP ILE LYS SER GLU ILE SEQRES 4 A 363 ASP LEU THR GLY SER TYR VAL HIS THR LYS GLU GLU LEU SEQRES 5 A 363 GLU HIS GLY ALA LYS MET ALA TRP ARG ASN SER ASN ARG SEQRES 6 A 363 CYS ILE GLY ARG LEU PHE TRP ASN SER LEU ASN VAL ILE SEQRES 7 A 363 ASP ARG ARG ASP VAL ARG THR LYS GLU GLU VAL ARG ASP SEQRES 8 A 363 ALA LEU PHE HIS HIS ILE GLU THR ALA THR ASN ASN GLY SEQRES 9 A 363 LYS ILE ARG PRO THR ILE THR ILE PHE PRO PRO GLU GLU SEQRES 10 A 363 LYS GLY GLU LYS GLN VAL GLU ILE TRP ASN HIS GLN LEU SEQRES 11 A 363 ILE ARG TYR ALA GLY TYR GLU SER ASP GLY GLU ARG ILE SEQRES 12 A 363 GLY ASP PRO ALA SER CYS SER LEU THR ALA ALA CYS GLU SEQRES 13 A 363 GLU LEU GLY TRP ARG GLY GLU ARG THR ASP PHE ASP LEU SEQRES 14 A 363 LEU PRO LEU ILE PHE ARG MET LYS GLY ASP GLU GLN PRO SEQRES 15 A 363 VAL TRP TYR GLU LEU PRO ARG SER LEU VAL ILE GLU VAL SEQRES 16 A 363 PRO ILE THR HIS PRO ASP ILE GLU ALA PHE SER ASP LEU SEQRES 17 A 363 GLU LEU LYS TRP TYR GLY VAL PRO ILE ILE SER ASP MET SEQRES 18 A 363 LYS LEU GLU VAL GLY GLY ILE HIS TYR ASN ALA ALA PRO SEQRES 19 A 363 PHE ASN GLY TRP TYR MET GLY THR GLU ILE GLY ALA ARG SEQRES 20 A 363 ASN LEU ALA ASP GLU LYS ARG TYR ASP LYS LEU LYS LYS SEQRES 21 A 363 VAL ALA SER VAL ILE GLY ILE ALA ALA ASP TYR ASN THR SEQRES 22 A 363 ASP LEU TRP LYS ASP GLN ALA LEU VAL GLU LEU ASN LYS SEQRES 23 A 363 ALA VAL LEU HIS SER TYR LYS LYS GLN GLY VAL SER ILE SEQRES 24 A 363 VAL ASP HIS HIS THR ALA ALA SER GLN PHE LYS ARG PHE SEQRES 25 A 363 GLU GLU GLN ALA GLU GLU ALA GLY ARG LYS LEU THR GLY SEQRES 26 A 363 ASP TRP THR TRP LEU ILE PRO PRO ILE SER PRO ALA ALA SEQRES 27 A 363 THR HIS ILE PHE HIS ARG SER TYR ASP ASN SER ILE VAL SEQRES 28 A 363 LYS PRO ASN TYR PHE TYR GLN ASP LYS PRO TYR GLU HET HEM A 901 43 HET H4B A 902 17 HET CL A 903 1 HET 7LN A 904 36 HET GOL A 905 6 HET GOL A 906 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM H4B 5,6,7,8-TETRAHYDROBIOPTERIN HETNAM CL CHLORIDE ION HETNAM 7LN N,N''-{[(2S)-3-AMINOPROPANE-1,2- HETNAM 2 7LN DIYL]BIS(OXYMETHANEDIYLBENZENE-3,1-DIYL)}DITHIOPHENE- HETNAM 3 7LN 2-CARBOXIMIDAMIDE HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 H4B C9 H15 N5 O3 FORMUL 4 CL CL 1- FORMUL 5 7LN C27 H29 N5 O2 S2 FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *247(H2 O) HELIX 1 1 GLU A 2 LEU A 22 1 21 HELIX 2 2 LYS A 24 ALA A 26 5 3 HELIX 3 3 GLU A 27 GLY A 43 1 17 HELIX 4 4 THR A 48 ASN A 62 1 15 HELIX 5 5 GLY A 68 LEU A 75 5 8 HELIX 6 6 THR A 85 ASN A 102 1 18 HELIX 7 7 ASN A 103 LYS A 105 5 3 HELIX 8 8 SER A 148 GLU A 156 1 9 HELIX 9 9 PRO A 188 VAL A 192 5 5 HELIX 10 10 ILE A 202 GLU A 209 5 8 HELIX 11 11 GLY A 241 ALA A 246 1 6 HELIX 12 12 LYS A 257 ILE A 265 1 9 HELIX 13 13 TYR A 271 ASP A 274 5 4 HELIX 14 14 LEU A 275 GLY A 296 1 22 HELIX 15 15 ASP A 301 GLY A 320 1 20 HELIX 16 16 ASP A 326 ILE A 331 1 6 HELIX 17 17 SER A 335 THR A 339 5 5 HELIX 18 18 HIS A 340 ARG A 344 5 5 SHEET 1 AA 4 ASN A 76 ASP A 79 0 SHEET 2 AA 4 THR A 109 ILE A 112 1 O ILE A 110 N ILE A 78 SHEET 3 AA 4 PHE A 235 ASN A 236 -1 O ASN A 236 N THR A 109 SHEET 4 AA 4 ILE A 217 ILE A 218 -1 O ILE A 218 N PHE A 235 SHEET 1 AB 3 VAL A 123 ILE A 125 0 SHEET 2 AB 3 LEU A 172 MET A 176 -1 O ARG A 175 N GLU A 124 SHEET 3 AB 3 VAL A 183 TYR A 185 -1 O VAL A 183 N PHE A 174 SHEET 1 AC 2 GLY A 135 GLU A 137 0 SHEET 2 AC 2 ARG A 142 GLY A 144 -1 O ILE A 143 N TYR A 136 SHEET 1 AD 2 GLU A 194 PRO A 196 0 SHEET 2 AD 2 LYS A 211 TYR A 213 -1 O TRP A 212 N VAL A 195 SHEET 1 AE 3 ILE A 228 TYR A 230 0 SHEET 2 AE 3 LYS A 222 VAL A 225 -1 O LEU A 223 N TYR A 230 SHEET 3 AE 3 ASN A 354 PHE A 356 -1 O ASN A 354 N GLU A 224 SHEET 1 AF 2 TYR A 239 MET A 240 0 SHEET 2 AF 2 ILE A 299 VAL A 300 1 N VAL A 300 O TYR A 239 LINK SG CYS A 66 FE HEM A 901 1555 1555 2.45 CISPEP 1 LYS A 352 PRO A 353 0 -0.07 SITE 1 AC1 15 TRP A 60 ARG A 65 CYS A 66 PHE A 235 SITE 2 AC1 15 ASN A 236 TRP A 238 GLU A 243 TRP A 329 SITE 3 AC1 15 TYR A 355 TYR A 357 H4B A 902 7LN A 904 SITE 4 AC1 15 GOL A 905 HOH A2151 HOH A2244 SITE 1 AC2 12 ARG A 247 TRP A 327 THR A 328 TRP A 329 SITE 2 AC2 12 PHE A 342 HIS A 343 ARG A 344 HEM A 901 SITE 3 AC2 12 7LN A 904 HOH A2164 HOH A2225 HOH A2245 SITE 1 AC3 3 GLN A 129 TYR A 239 ASN A 248 SITE 1 AC4 12 PRO A 216 ILE A 218 PHE A 235 ASN A 236 SITE 2 AC4 12 GLY A 237 TRP A 238 GLU A 243 TYR A 357 SITE 3 AC4 12 GLN A 358 HEM A 901 H4B A 902 HOH A2166 SITE 1 AC5 6 ARG A 65 TYR A 355 PHE A 356 TYR A 357 SITE 2 AC5 6 HEM A 901 HOH A2030 SITE 1 AC6 9 GLU A 156 TRP A 160 ARG A 161 TRP A 238 SITE 2 AC6 9 SER A 298 ILE A 299 HOH A2103 HOH A2108 SITE 3 AC6 9 HOH A2247 CRYST1 80.830 94.750 63.370 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012372 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010554 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015780 0.00000