data_4UHZ # _entry.id 4UHZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4UHZ PDBE EBI-63464 WWPDB D_1290063464 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4UHY unspecified 'CRYSTAL STRUCTURE OF THE HUMAN RGMA-BMP2 COMPLEX' PDB 4UI0 unspecified 'CRYSTAL STRUCTURE OF THE HUMAN RGMB-BMP2 COMPLEX, CRYSTAL FORM 2' PDB 4UI1 unspecified 'CRYSTAL STRUCTURE OF THE HUMAN RGMC-BMP2 COMPLEX' PDB 4UI2 unspecified 'CRYSTAL STRUCTURE OF THE TERNARY RGMB-BMP2-NEO1 COMPLEX' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4UHZ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-03-27 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Healey, E.G.' 1 'Bishop, B.' 2 'Elegheert, J.' 3 'Bell, C.H.' 4 'Padilla-Parra, S.' 5 'Siebold, C.' 6 # _citation.id primary _citation.title 'Repulsive Guidance Molecule is a Structural Bridge between Neogenin and Bone Morphogenetic Protein.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 22 _citation.page_first 458 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25938661 _citation.pdbx_database_id_DOI 10.1038/NSMB.3016 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Healey, E.G.' 1 primary 'Bishop, B.' 2 primary 'Elegheert, J.' 3 primary 'Bell, C.H.' 4 primary 'Padilla-Parra, S.' 5 primary 'Siebold, C.' 6 # _cell.entry_id 4UHZ _cell.length_a 129.010 _cell.length_b 129.010 _cell.length_c 129.010 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UHZ _symmetry.space_group_name_H-M 'I 21 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BONE MORPHOGENETIC PROTEIN 2' 12923.854 1 ? ? 'C-TERMINAL DOMAIN SIGNALING DOMAIN, RESIDUES 283-396' ? 2 polymer man 'RGM DOMAIN FAMILY MEMBER B' 10532.701 1 ? ? 'N-TERMINAL DOMAIN, RESIDUES 52-137' ? 3 non-polymer syn 'SULFATE ION' 96.063 8 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'BMP-2, BONE MORPHOGENETIC PROTEIN 2A, BMP-2A, BMP2' 2 'DRG11-RESPONSIVE AXONAL GUIDANCE AND OUTGROWTH OF NEURITE, DRAGON, REPULSIVE GUIDANCE MOLECULE B, RGMB' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QAKHKQRKRLKSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCV PTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR ; ;QAKHKQRKRLKSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCV PTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR ; A ? 2 'polypeptide(L)' no no ;ETGQCRIQKCTTDFVSLTSHLNSAVDGFDSEFCKALRAYAGCTQRTSKACRGNLVYHSAVLGISDLMSQRNCSKDGPTSS TNPEVTHGTKHHHHHH ; ;ETGQCRIQKCTTDFVSLTSHLNSAVDGFDSEFCKALRAYAGCTQRTSKACRGNLVYHSAVLGISDLMSQRNCSKDGPTSS TNPEVTHGTKHHHHHH ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ALA n 1 3 LYS n 1 4 HIS n 1 5 LYS n 1 6 GLN n 1 7 ARG n 1 8 LYS n 1 9 ARG n 1 10 LEU n 1 11 LYS n 1 12 SER n 1 13 SER n 1 14 CYS n 1 15 LYS n 1 16 ARG n 1 17 HIS n 1 18 PRO n 1 19 LEU n 1 20 TYR n 1 21 VAL n 1 22 ASP n 1 23 PHE n 1 24 SER n 1 25 ASP n 1 26 VAL n 1 27 GLY n 1 28 TRP n 1 29 ASN n 1 30 ASP n 1 31 TRP n 1 32 ILE n 1 33 VAL n 1 34 ALA n 1 35 PRO n 1 36 PRO n 1 37 GLY n 1 38 TYR n 1 39 HIS n 1 40 ALA n 1 41 PHE n 1 42 TYR n 1 43 CYS n 1 44 HIS n 1 45 GLY n 1 46 GLU n 1 47 CYS n 1 48 PRO n 1 49 PHE n 1 50 PRO n 1 51 LEU n 1 52 ALA n 1 53 ASP n 1 54 HIS n 1 55 LEU n 1 56 ASN n 1 57 SER n 1 58 THR n 1 59 ASN n 1 60 HIS n 1 61 ALA n 1 62 ILE n 1 63 VAL n 1 64 GLN n 1 65 THR n 1 66 LEU n 1 67 VAL n 1 68 ASN n 1 69 SER n 1 70 VAL n 1 71 ASN n 1 72 SER n 1 73 LYS n 1 74 ILE n 1 75 PRO n 1 76 LYS n 1 77 ALA n 1 78 CYS n 1 79 CYS n 1 80 VAL n 1 81 PRO n 1 82 THR n 1 83 GLU n 1 84 LEU n 1 85 SER n 1 86 ALA n 1 87 ILE n 1 88 SER n 1 89 MET n 1 90 LEU n 1 91 TYR n 1 92 LEU n 1 93 ASP n 1 94 GLU n 1 95 ASN n 1 96 GLU n 1 97 LYS n 1 98 VAL n 1 99 VAL n 1 100 LEU n 1 101 LYS n 1 102 ASN n 1 103 TYR n 1 104 GLN n 1 105 ASP n 1 106 MET n 1 107 VAL n 1 108 VAL n 1 109 GLU n 1 110 GLY n 1 111 CYS n 1 112 GLY n 1 113 CYS n 1 114 ARG n 2 1 GLU n 2 2 THR n 2 3 GLY n 2 4 GLN n 2 5 CYS n 2 6 ARG n 2 7 ILE n 2 8 GLN n 2 9 LYS n 2 10 CYS n 2 11 THR n 2 12 THR n 2 13 ASP n 2 14 PHE n 2 15 VAL n 2 16 SER n 2 17 LEU n 2 18 THR n 2 19 SER n 2 20 HIS n 2 21 LEU n 2 22 ASN n 2 23 SER n 2 24 ALA n 2 25 VAL n 2 26 ASP n 2 27 GLY n 2 28 PHE n 2 29 ASP n 2 30 SER n 2 31 GLU n 2 32 PHE n 2 33 CYS n 2 34 LYS n 2 35 ALA n 2 36 LEU n 2 37 ARG n 2 38 ALA n 2 39 TYR n 2 40 ALA n 2 41 GLY n 2 42 CYS n 2 43 THR n 2 44 GLN n 2 45 ARG n 2 46 THR n 2 47 SER n 2 48 LYS n 2 49 ALA n 2 50 CYS n 2 51 ARG n 2 52 GLY n 2 53 ASN n 2 54 LEU n 2 55 VAL n 2 56 TYR n 2 57 HIS n 2 58 SER n 2 59 ALA n 2 60 VAL n 2 61 LEU n 2 62 GLY n 2 63 ILE n 2 64 SER n 2 65 ASP n 2 66 LEU n 2 67 MET n 2 68 SER n 2 69 GLN n 2 70 ARG n 2 71 ASN n 2 72 CYS n 2 73 SER n 2 74 LYS n 2 75 ASP n 2 76 GLY n 2 77 PRO n 2 78 THR n 2 79 SER n 2 80 SER n 2 81 THR n 2 82 ASN n 2 83 PRO n 2 84 GLU n 2 85 VAL n 2 86 THR n 2 87 HIS n 2 88 GLY n 2 89 THR n 2 90 LYS n 2 91 HIS n 2 92 HIS n 2 93 HIS n 2 94 HIS n 2 95 HIS n 2 96 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' 'ROSETTA PLYSS' ? ? ? ? ? ? PLASMID PET22B ? ? ? ? ? 2 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? HUMAN 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? HEK293T ? ? ? ? ? ? ? ? ? PHLSEC ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP BMP2_HUMAN 1 ? ? P12643 ? 2 UNP RGMB_HUMAN 2 ? ? Q6NW40 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4UHZ A 1 ? 114 ? P12643 283 ? 396 ? 283 396 2 2 4UHZ B 3 ? 88 ? Q6NW40 52 ? 137 ? 52 137 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 4UHZ GLU B 1 ? UNP Q6NW40 ? ? 'expression tag' 50 1 2 4UHZ THR B 2 ? UNP Q6NW40 ? ? 'expression tag' 51 2 2 4UHZ THR B 89 ? UNP Q6NW40 ? ? 'expression tag' 138 3 2 4UHZ LYS B 90 ? UNP Q6NW40 ? ? 'expression tag' 139 4 2 4UHZ HIS B 91 ? UNP Q6NW40 ? ? 'expression tag' 140 5 2 4UHZ HIS B 92 ? UNP Q6NW40 ? ? 'expression tag' 141 6 2 4UHZ HIS B 93 ? UNP Q6NW40 ? ? 'expression tag' 142 7 2 4UHZ HIS B 94 ? UNP Q6NW40 ? ? 'expression tag' 143 8 2 4UHZ HIS B 95 ? UNP Q6NW40 ? ? 'expression tag' 144 9 2 4UHZ HIS B 96 ? UNP Q6NW40 ? ? 'expression tag' 145 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4UHZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.82 _exptl_crystal.density_percent_sol 68 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2 M AMMONIUM SULPHATE, 8% (V/V) 2,5- HEXANEDIOL' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-12-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97620 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_wavelength 0.97620 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4UHZ _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.85 _reflns.number_obs 8429 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.10 _reflns.B_iso_Wilson_estimate 117.52 _reflns.pdbx_redundancy 4.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.85 _reflns_shell.d_res_low 2.93 _reflns_shell.percent_possible_all 98.9 _reflns_shell.Rmerge_I_obs 0.82 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.50 _reflns_shell.pdbx_redundancy 4.0 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4UHZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 8427 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 2.85 _refine.ls_percent_reflns_obs 99.22 _refine.ls_R_factor_obs 0.2060 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2050 _refine.ls_R_factor_R_free 0.2286 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.63 _refine.ls_number_reflns_R_free 390 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9418 _refine.correlation_coeff_Fo_to_Fc_free 0.9384 _refine.B_iso_mean 112.03 _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[3][3] 0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'DEAL-DIST CONTACT TERM CONTACT SETUP. ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI 0.402 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.263 _refine.pdbx_overall_SU_R_Blow_DPI 0.399 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.260 # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 4UHZ _refine_analyze.Luzzati_coordinate_error_obs 0.561 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1345 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1385 _refine_hist.d_res_high 2.85 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.009 ? 2.00 1413 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 1.03 ? 2.00 1925 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 630 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 33 'X-RAY DIFFRACTION' HARMONIC t_gen_planes ? ? 5.00 201 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 1413 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? t_omega_torsion 2.33 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 3.09 ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 178 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 1523 'X-RAY DIFFRACTION' SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.d_res_high 2.85 _refine_ls_shell.d_res_low 3.19 _refine_ls_shell.number_reflns_R_work 2251 _refine_ls_shell.R_factor_R_work 0.2351 _refine_ls_shell.percent_reflns_obs 99.22 _refine_ls_shell.R_factor_R_free 0.2795 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 4.09 _refine_ls_shell.number_reflns_R_free 96 _refine_ls_shell.number_reflns_all 2347 _refine_ls_shell.R_factor_all 0.2370 # _struct.entry_id 4UHZ _struct.title 'Crystal structure of the human RGMB-BMP2 complex, crystal form 1' _struct.pdbx_descriptor 'BONE MORPHOGENETIC PROTEIN 2, RGM DOMAIN FAMILY MEMBER B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4UHZ _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'SIGNALING PROTEIN, BONE MORPHOGENETIC PROTEIN PATHWAY, HEMOJUVELIN, MORPHOGEN, AXON GUIDANCE, CELL SURFACE RECEPTOR SIGNALING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 23 ? GLY A 27 ? PHE A 305 GLY A 309 1 ? 5 HELX_P HELX_P2 2 THR A 58 ? ASN A 71 ? THR A 340 ASN A 353 1 ? 14 HELX_P HELX_P3 3 ARG B 6 ? THR B 18 ? ARG B 55 THR B 67 1 ? 13 HELX_P HELX_P4 4 PHE B 28 ? THR B 46 ? PHE B 77 THR B 95 1 ? 19 HELX_P HELX_P5 5 ASN B 53 ? GLN B 69 ? ASN B 102 GLN B 118 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 14 SG ? ? ? 1_555 A CYS 79 SG ? ? A CYS 296 A CYS 361 1_555 ? ? ? ? ? ? ? 2.040 ? disulf2 disulf ? ? A CYS 43 SG ? ? ? 1_555 A CYS 111 SG ? ? A CYS 325 A CYS 393 1_555 ? ? ? ? ? ? ? 2.024 ? disulf3 disulf ? ? A CYS 47 SG ? ? ? 1_555 A CYS 113 SG ? ? A CYS 329 A CYS 395 1_555 ? ? ? ? ? ? ? 2.045 ? disulf4 disulf ? ? A CYS 78 SG ? ? ? 1_555 A CYS 78 SG ? ? A CYS 360 A CYS 360 15_757 ? ? ? ? ? ? ? 2.414 ? disulf5 disulf ? ? B CYS 5 SG ? ? ? 1_555 B CYS 50 SG ? ? B CYS 54 B CYS 99 1_555 ? ? ? ? ? ? ? 2.037 ? disulf6 disulf ? ? B CYS 10 SG ? ? ? 1_555 B CYS 42 SG ? ? B CYS 59 B CYS 91 1_555 ? ? ? ? ? ? ? 2.054 ? disulf7 disulf ? ? B CYS 33 SG ? ? ? 1_555 B CYS 72 SG ? ? B CYS 82 B CYS 121 1_555 ? ? ? ? ? ? ? 2.036 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 34 A . ? ALA 316 A PRO 35 A ? PRO 317 A 1 0.66 2 PHE 49 A . ? PHE 331 A PRO 50 A ? PRO 332 A 1 -4.72 3 LEU 21 B . ? LEU 70 B ASN 22 B ? ASN 71 B 1 -1.12 4 ASN 22 B . ? ASN 71 B SER 23 B ? SER 72 B 1 1.36 5 SER 23 B . ? SER 72 B ALA 24 B ? ALA 73 B 1 -3.33 6 VAL 25 B . ? VAL 74 B ASP 26 B ? ASP 75 B 1 0.84 7 ASP 26 B . ? ASP 75 B GLY 27 B ? GLY 76 B 1 -1.27 8 GLN 69 B . ? GLN 118 B ARG 70 B ? ARG 119 B 1 0.15 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? AC ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 15 ? HIS A 17 ? LYS A 297 HIS A 299 AA 2 TYR A 42 ? HIS A 44 ? TYR A 324 HIS A 326 AB 1 TYR A 20 ? ASP A 22 ? TYR A 302 ASP A 304 AB 2 GLY A 37 ? HIS A 39 ? GLY A 319 HIS A 321 AC 1 ILE A 32 ? ALA A 34 ? ILE A 314 ALA A 316 AC 2 CYS A 79 ? LEU A 92 ? CYS A 361 LEU A 374 AC 3 VAL A 98 ? CYS A 113 ? VAL A 380 CYS A 395 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N HIS A 17 ? N HIS A 299 O TYR A 42 ? O TYR A 324 AB 1 2 N VAL A 21 ? N VAL A 303 O TYR A 38 ? O TYR A 320 AC 1 2 N VAL A 33 ? N VAL A 315 O LEU A 90 ? O LEU A 372 AC 2 3 N TYR A 91 ? N TYR A 373 O VAL A 99 ? O VAL A 381 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 B 1123' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 1397' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 1398' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 B 1124' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 1399' AC6 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE SO4 A 1400' AC7 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE SO4 A 1401' AC8 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE SO4 A 1402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS B 33 ? CYS B 82 . ? 1_555 ? 2 AC1 4 ARG B 37 ? ARG B 86 . ? 1_555 ? 3 AC1 4 ASN B 71 ? ASN B 120 . ? 1_555 ? 4 AC1 4 CYS B 72 ? CYS B 121 . ? 1_555 ? 5 AC2 3 SER A 12 ? SER A 294 . ? 1_555 ? 6 AC2 3 SER A 13 ? SER A 295 . ? 1_555 ? 7 AC2 3 LYS A 15 ? LYS A 297 . ? 1_555 ? 8 AC3 3 ASN A 68 ? ASN A 350 . ? 1_555 ? 9 AC3 3 SER A 72 ? SER A 354 . ? 1_555 ? 10 AC3 3 LYS A 76 ? LYS A 358 . ? 1_555 ? 11 AC4 4 LYS A 101 ? LYS A 383 . ? 1_555 ? 12 AC4 4 GLN B 4 ? GLN B 53 . ? 1_555 ? 13 AC4 4 CYS B 5 ? CYS B 54 . ? 1_555 ? 14 AC4 4 ASN B 53 ? ASN B 102 . ? 1_555 ? 15 AC5 4 ASN A 59 ? ASN A 341 . ? 15_757 ? 16 AC5 4 ASN A 102 ? ASN A 384 . ? 1_555 ? 17 AC5 4 TYR A 103 ? TYR A 385 . ? 1_555 ? 18 AC5 4 GLN A 104 ? GLN A 386 . ? 1_555 ? 19 AC6 1 HIS A 39 ? HIS A 321 . ? 1_555 ? 20 AC7 1 ARG A 16 ? ARG A 298 . ? 1_555 ? 21 AC8 1 SER A 12 ? SER A 294 . ? 1_555 ? # _database_PDB_matrix.entry_id 4UHZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4UHZ _atom_sites.fract_transf_matrix[1][1] 0.007751 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007751 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007751 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 283 ? ? ? A . n A 1 2 ALA 2 284 ? ? ? A . n A 1 3 LYS 3 285 ? ? ? A . n A 1 4 HIS 4 286 ? ? ? A . n A 1 5 LYS 5 287 ? ? ? A . n A 1 6 GLN 6 288 ? ? ? A . n A 1 7 ARG 7 289 ? ? ? A . n A 1 8 LYS 8 290 ? ? ? A . n A 1 9 ARG 9 291 ? ? ? A . n A 1 10 LEU 10 292 ? ? ? A . n A 1 11 LYS 11 293 293 LYS LYS A . n A 1 12 SER 12 294 294 SER SER A . n A 1 13 SER 13 295 295 SER SER A . n A 1 14 CYS 14 296 296 CYS CYS A . n A 1 15 LYS 15 297 297 LYS LYS A . n A 1 16 ARG 16 298 298 ARG ARG A . n A 1 17 HIS 17 299 299 HIS HIS A . n A 1 18 PRO 18 300 300 PRO PRO A . n A 1 19 LEU 19 301 301 LEU LEU A . n A 1 20 TYR 20 302 302 TYR TYR A . n A 1 21 VAL 21 303 303 VAL VAL A . n A 1 22 ASP 22 304 304 ASP ASP A . n A 1 23 PHE 23 305 305 PHE PHE A . n A 1 24 SER 24 306 306 SER SER A . n A 1 25 ASP 25 307 307 ASP ASP A . n A 1 26 VAL 26 308 308 VAL VAL A . n A 1 27 GLY 27 309 309 GLY GLY A . n A 1 28 TRP 28 310 310 TRP TRP A . n A 1 29 ASN 29 311 311 ASN ASN A . n A 1 30 ASP 30 312 312 ASP ASP A . n A 1 31 TRP 31 313 313 TRP TRP A . n A 1 32 ILE 32 314 314 ILE ILE A . n A 1 33 VAL 33 315 315 VAL VAL A . n A 1 34 ALA 34 316 316 ALA ALA A . n A 1 35 PRO 35 317 317 PRO PRO A . n A 1 36 PRO 36 318 318 PRO PRO A . n A 1 37 GLY 37 319 319 GLY GLY A . n A 1 38 TYR 38 320 320 TYR TYR A . n A 1 39 HIS 39 321 321 HIS HIS A . n A 1 40 ALA 40 322 322 ALA ALA A . n A 1 41 PHE 41 323 323 PHE PHE A . n A 1 42 TYR 42 324 324 TYR TYR A . n A 1 43 CYS 43 325 325 CYS CYS A . n A 1 44 HIS 44 326 326 HIS HIS A . n A 1 45 GLY 45 327 327 GLY GLY A . n A 1 46 GLU 46 328 328 GLU GLU A . n A 1 47 CYS 47 329 329 CYS CYS A . n A 1 48 PRO 48 330 330 PRO PRO A . n A 1 49 PHE 49 331 331 PHE PHE A . n A 1 50 PRO 50 332 332 PRO PRO A . n A 1 51 LEU 51 333 333 LEU LEU A . n A 1 52 ALA 52 334 334 ALA ALA A . n A 1 53 ASP 53 335 335 ASP ASP A . n A 1 54 HIS 54 336 336 HIS HIS A . n A 1 55 LEU 55 337 337 LEU LEU A . n A 1 56 ASN 56 338 338 ASN ASN A . n A 1 57 SER 57 339 339 SER SER A . n A 1 58 THR 58 340 340 THR THR A . n A 1 59 ASN 59 341 341 ASN ASN A . n A 1 60 HIS 60 342 342 HIS HIS A . n A 1 61 ALA 61 343 343 ALA ALA A . n A 1 62 ILE 62 344 344 ILE ILE A . n A 1 63 VAL 63 345 345 VAL VAL A . n A 1 64 GLN 64 346 346 GLN GLN A . n A 1 65 THR 65 347 347 THR THR A . n A 1 66 LEU 66 348 348 LEU LEU A . n A 1 67 VAL 67 349 349 VAL VAL A . n A 1 68 ASN 68 350 350 ASN ASN A . n A 1 69 SER 69 351 351 SER SER A . n A 1 70 VAL 70 352 352 VAL VAL A . n A 1 71 ASN 71 353 353 ASN ASN A . n A 1 72 SER 72 354 354 SER SER A . n A 1 73 LYS 73 355 355 LYS LYS A . n A 1 74 ILE 74 356 356 ILE ILE A . n A 1 75 PRO 75 357 357 PRO PRO A . n A 1 76 LYS 76 358 358 LYS LYS A . n A 1 77 ALA 77 359 359 ALA ALA A . n A 1 78 CYS 78 360 360 CYS CYS A . n A 1 79 CYS 79 361 361 CYS CYS A . n A 1 80 VAL 80 362 362 VAL VAL A . n A 1 81 PRO 81 363 363 PRO PRO A . n A 1 82 THR 82 364 364 THR THR A . n A 1 83 GLU 83 365 365 GLU GLU A . n A 1 84 LEU 84 366 366 LEU LEU A . n A 1 85 SER 85 367 367 SER SER A . n A 1 86 ALA 86 368 368 ALA ALA A . n A 1 87 ILE 87 369 369 ILE ILE A . n A 1 88 SER 88 370 370 SER SER A . n A 1 89 MET 89 371 371 MET MET A . n A 1 90 LEU 90 372 372 LEU LEU A . n A 1 91 TYR 91 373 373 TYR TYR A . n A 1 92 LEU 92 374 374 LEU LEU A . n A 1 93 ASP 93 375 375 ASP ASP A . n A 1 94 GLU 94 376 376 GLU GLU A . n A 1 95 ASN 95 377 377 ASN ASN A . n A 1 96 GLU 96 378 378 GLU GLU A . n A 1 97 LYS 97 379 379 LYS LYS A . n A 1 98 VAL 98 380 380 VAL VAL A . n A 1 99 VAL 99 381 381 VAL VAL A . n A 1 100 LEU 100 382 382 LEU LEU A . n A 1 101 LYS 101 383 383 LYS LYS A . n A 1 102 ASN 102 384 384 ASN ASN A . n A 1 103 TYR 103 385 385 TYR TYR A . n A 1 104 GLN 104 386 386 GLN GLN A . n A 1 105 ASP 105 387 387 ASP ASP A . n A 1 106 MET 106 388 388 MET MET A . n A 1 107 VAL 107 389 389 VAL VAL A . n A 1 108 VAL 108 390 390 VAL VAL A . n A 1 109 GLU 109 391 391 GLU GLU A . n A 1 110 GLY 110 392 392 GLY GLY A . n A 1 111 CYS 111 393 393 CYS CYS A . n A 1 112 GLY 112 394 394 GLY GLY A . n A 1 113 CYS 113 395 395 CYS CYS A . n A 1 114 ARG 114 396 396 ARG ARG A . n B 2 1 GLU 1 50 ? ? ? B . n B 2 2 THR 2 51 ? ? ? B . n B 2 3 GLY 3 52 ? ? ? B . n B 2 4 GLN 4 53 53 GLN GLN B . n B 2 5 CYS 5 54 54 CYS CYS B . n B 2 6 ARG 6 55 55 ARG ARG B . n B 2 7 ILE 7 56 56 ILE ILE B . n B 2 8 GLN 8 57 57 GLN GLN B . n B 2 9 LYS 9 58 58 LYS LYS B . n B 2 10 CYS 10 59 59 CYS CYS B . n B 2 11 THR 11 60 60 THR THR B . n B 2 12 THR 12 61 61 THR THR B . n B 2 13 ASP 13 62 62 ASP ASP B . n B 2 14 PHE 14 63 63 PHE PHE B . n B 2 15 VAL 15 64 64 VAL VAL B . n B 2 16 SER 16 65 65 SER SER B . n B 2 17 LEU 17 66 66 LEU LEU B . n B 2 18 THR 18 67 67 THR THR B . n B 2 19 SER 19 68 68 SER SER B . n B 2 20 HIS 20 69 69 HIS HIS B . n B 2 21 LEU 21 70 70 LEU LEU B . n B 2 22 ASN 22 71 71 ASN ASN B . n B 2 23 SER 23 72 72 SER SER B . n B 2 24 ALA 24 73 73 ALA ALA B . n B 2 25 VAL 25 74 74 VAL VAL B . n B 2 26 ASP 26 75 75 ASP ASP B . n B 2 27 GLY 27 76 76 GLY GLY B . n B 2 28 PHE 28 77 77 PHE PHE B . n B 2 29 ASP 29 78 78 ASP ASP B . n B 2 30 SER 30 79 79 SER SER B . n B 2 31 GLU 31 80 80 GLU GLU B . n B 2 32 PHE 32 81 81 PHE PHE B . n B 2 33 CYS 33 82 82 CYS CYS B . n B 2 34 LYS 34 83 83 LYS LYS B . n B 2 35 ALA 35 84 84 ALA ALA B . n B 2 36 LEU 36 85 85 LEU LEU B . n B 2 37 ARG 37 86 86 ARG ARG B . n B 2 38 ALA 38 87 87 ALA ALA B . n B 2 39 TYR 39 88 88 TYR TYR B . n B 2 40 ALA 40 89 89 ALA ALA B . n B 2 41 GLY 41 90 90 GLY GLY B . n B 2 42 CYS 42 91 91 CYS CYS B . n B 2 43 THR 43 92 92 THR THR B . n B 2 44 GLN 44 93 93 GLN GLN B . n B 2 45 ARG 45 94 94 ARG ARG B . n B 2 46 THR 46 95 95 THR THR B . n B 2 47 SER 47 96 96 SER SER B . n B 2 48 LYS 48 97 97 LYS LYS B . n B 2 49 ALA 49 98 98 ALA ALA B . n B 2 50 CYS 50 99 99 CYS CYS B . n B 2 51 ARG 51 100 100 ARG ARG B . n B 2 52 GLY 52 101 101 GLY GLY B . n B 2 53 ASN 53 102 102 ASN ASN B . n B 2 54 LEU 54 103 103 LEU LEU B . n B 2 55 VAL 55 104 104 VAL VAL B . n B 2 56 TYR 56 105 105 TYR TYR B . n B 2 57 HIS 57 106 106 HIS HIS B . n B 2 58 SER 58 107 107 SER SER B . n B 2 59 ALA 59 108 108 ALA ALA B . n B 2 60 VAL 60 109 109 VAL VAL B . n B 2 61 LEU 61 110 110 LEU LEU B . n B 2 62 GLY 62 111 111 GLY GLY B . n B 2 63 ILE 63 112 112 ILE ILE B . n B 2 64 SER 64 113 113 SER SER B . n B 2 65 ASP 65 114 114 ASP ASP B . n B 2 66 LEU 66 115 115 LEU LEU B . n B 2 67 MET 67 116 116 MET MET B . n B 2 68 SER 68 117 117 SER SER B . n B 2 69 GLN 69 118 118 GLN GLN B . n B 2 70 ARG 70 119 119 ARG ARG B . n B 2 71 ASN 71 120 120 ASN ASN B . n B 2 72 CYS 72 121 121 CYS CYS B . n B 2 73 SER 73 122 122 SER SER B . n B 2 74 LYS 74 123 ? ? ? B . n B 2 75 ASP 75 124 ? ? ? B . n B 2 76 GLY 76 125 ? ? ? B . n B 2 77 PRO 77 126 ? ? ? B . n B 2 78 THR 78 127 ? ? ? B . n B 2 79 SER 79 128 ? ? ? B . n B 2 80 SER 80 129 ? ? ? B . n B 2 81 THR 81 130 ? ? ? B . n B 2 82 ASN 82 131 ? ? ? B . n B 2 83 PRO 83 132 ? ? ? B . n B 2 84 GLU 84 133 ? ? ? B . n B 2 85 VAL 85 134 ? ? ? B . n B 2 86 THR 86 135 ? ? ? B . n B 2 87 HIS 87 136 ? ? ? B . n B 2 88 GLY 88 137 ? ? ? B . n B 2 89 THR 89 138 ? ? ? B . n B 2 90 LYS 90 139 ? ? ? B . n B 2 91 HIS 91 140 ? ? ? B . n B 2 92 HIS 92 141 ? ? ? B . n B 2 93 HIS 93 142 ? ? ? B . n B 2 94 HIS 94 143 ? ? ? B . n B 2 95 HIS 95 144 ? ? ? B . n B 2 96 HIS 96 145 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 1397 1397 SO4 SO4 A . D 3 SO4 1 1398 1398 SO4 SO4 A . E 3 SO4 1 1399 1399 SO4 SO4 A . F 3 SO4 1 1400 1400 SO4 SO4 A . G 3 SO4 1 1401 1401 SO4 SO4 A . H 3 SO4 1 1402 1402 SO4 SO4 A . I 3 SO4 1 1123 1123 SO4 SO4 B . J 3 SO4 1 1124 1124 SO4 SO4 B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2140 ? 1 MORE -91.5 ? 1 'SSA (A^2)' 11620 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-05-06 2 'Structure model' 1 1 2015-05-20 3 'Structure model' 1 2 2015-06-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 152.3860 15.9772 131.1900 0.0013 -0.0977 -0.2316 0.0176 -0.0322 -0.0425 6.7760 1.3787 1.6042 0.1957 -0.5711 -0.0948 0.0282 -0.2694 0.0991 -0.0867 -0.0889 0.1444 0.0320 -0.1096 0.0607 'X-RAY DIFFRACTION' 2 ? refined 148.1230 20.2045 107.8620 -0.2098 0.3193 -0.3517 0.0198 -0.1677 -0.0121 2.4791 2.1008 9.4368 -1.7374 -2.5662 -2.1956 0.0305 0.4103 0.4784 -0.1811 -0.0011 -0.0062 0.0069 -0.0544 -0.0294 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '{ A|293 - A|396 }' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '{ B|53 - B|122 }' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BUSTER refinement 2.10.2 ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 4UHZ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;N-TERMINAL DOMAIN OF HUMAN RGMB WITH 3 ADDITIONAL N- TERMINAL RESIDUES (ETG) AND 9 ADDITIONAL C-TERMINAL RESIDUES (GTKHHHHHH). ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 301 ? ? -160.79 108.38 2 1 PHE A 323 ? ? 70.97 172.88 3 1 CYS A 329 ? ? -115.99 63.06 4 1 ARG B 55 ? ? -113.00 55.47 5 1 THR B 67 ? ? -88.31 33.18 6 1 SER B 68 ? ? -104.80 70.21 7 1 CYS B 121 ? ? -123.53 -153.83 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 283 ? A GLN 1 2 1 Y 1 A ALA 284 ? A ALA 2 3 1 Y 1 A LYS 285 ? A LYS 3 4 1 Y 1 A HIS 286 ? A HIS 4 5 1 Y 1 A LYS 287 ? A LYS 5 6 1 Y 1 A GLN 288 ? A GLN 6 7 1 Y 1 A ARG 289 ? A ARG 7 8 1 Y 1 A LYS 290 ? A LYS 8 9 1 Y 1 A ARG 291 ? A ARG 9 10 1 Y 1 A LEU 292 ? A LEU 10 11 1 Y 1 B GLU 50 ? B GLU 1 12 1 Y 1 B THR 51 ? B THR 2 13 1 Y 1 B GLY 52 ? B GLY 3 14 1 Y 1 B LYS 123 ? B LYS 74 15 1 Y 1 B ASP 124 ? B ASP 75 16 1 Y 1 B GLY 125 ? B GLY 76 17 1 Y 1 B PRO 126 ? B PRO 77 18 1 Y 1 B THR 127 ? B THR 78 19 1 Y 1 B SER 128 ? B SER 79 20 1 Y 1 B SER 129 ? B SER 80 21 1 Y 1 B THR 130 ? B THR 81 22 1 Y 1 B ASN 131 ? B ASN 82 23 1 Y 1 B PRO 132 ? B PRO 83 24 1 Y 1 B GLU 133 ? B GLU 84 25 1 Y 1 B VAL 134 ? B VAL 85 26 1 Y 1 B THR 135 ? B THR 86 27 1 Y 1 B HIS 136 ? B HIS 87 28 1 Y 1 B GLY 137 ? B GLY 88 29 1 Y 1 B THR 138 ? B THR 89 30 1 Y 1 B LYS 139 ? B LYS 90 31 1 Y 1 B HIS 140 ? B HIS 91 32 1 Y 1 B HIS 141 ? B HIS 92 33 1 Y 1 B HIS 142 ? B HIS 93 34 1 Y 1 B HIS 143 ? B HIS 94 35 1 Y 1 B HIS 144 ? B HIS 95 36 1 Y 1 B HIS 145 ? B HIS 96 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'SULFATE ION' _pdbx_entity_nonpoly.comp_id SO4 #