HEADER TRANSFERASE 31-MAR-15 4UIQ TITLE ISOLATED GLOBIN DOMAIN OF THE BORDETELLA PERTUSSIS GLOBIN- TITLE 2 COUPLED SENSOR WITH A HEME AT THE DIMER INTERFACE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLOBIN-COUPLED SENSOR WITH DIGUANYLATE CYCLASE ACTIVITY; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GLOBIN DOMAIN, RESIDUES 1-169; COMPND 5 EC: 2.7.7.65; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PERTUSSIS; SOURCE 3 ORGANISM_TAXID: 257313; SOURCE 4 STRAIN: TOHAMA I; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET23 KEYWDS TRANSFERASE, GLOBIN-COUPLED SENSOR, HEME-BASED SENSOR, OXYGEN KEYWDS 2 AFFINITY, DIGUANYLATE CYCLASE, C-DI-GMP, BIOFILM FORMATION, ENZYME KEYWDS 3 EFFICIENCY EXPDTA X-RAY DIFFRACTION AUTHOR F.GERMANI,J.DONNE,A.DE SCHUTTER,A.PESCE,H.BERGHMANS, AUTHOR 2 M.-L.VAN HAUWAERT,L.MOENS,S.VAN DOORSLAER,M.BOLOGNESI,M.NARDINI, AUTHOR 3 S.DEWILDE REVDAT 1 13-APR-16 4UIQ 0 JRNL AUTH F.GERMANI,J.DONNE,A.DE SCHUTTER,A.PESCE,H.BERGHMANS, JRNL AUTH 2 M.-L.VAN HAUWAERT,L.MOENS,S.VAN DOORSLAER,M.BOLOGNESI, JRNL AUTH 3 M.NARDINI,S.DEWILDE JRNL TITL IDENTIFICATION OF A PUTATIVE ALLOSTERIC SITE IN THE SENSOR JRNL TITL 2 DOMAIN OF BORDETELLA PERTUSSIS GLOBIN- COUPLED SENSOR FOR JRNL TITL 3 THE CONTROL OF BIOFILM FORMATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.521 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.35 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.21 REMARK 3 NUMBER OF REFLECTIONS : 42072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1581 REMARK 3 R VALUE (WORKING SET) : 0.1556 REMARK 3 FREE R VALUE : 0.2043 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 2116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.5344 - 3.8217 0.98 2786 157 0.1793 0.1981 REMARK 3 2 3.8217 - 3.0337 0.97 2665 142 0.1627 0.1955 REMARK 3 3 3.0337 - 2.6503 0.99 2734 145 0.1648 0.2146 REMARK 3 4 2.6503 - 2.4080 0.96 2605 141 0.1583 0.1967 REMARK 3 5 2.4080 - 2.2354 0.98 2684 166 0.1470 0.1954 REMARK 3 6 2.2354 - 2.1036 0.98 2693 135 0.1400 0.1976 REMARK 3 7 2.1036 - 1.9983 0.98 2671 124 0.1383 0.2097 REMARK 3 8 1.9983 - 1.9113 0.96 2624 124 0.1339 0.2403 REMARK 3 9 1.9113 - 1.8377 0.98 2664 139 0.1325 0.1934 REMARK 3 10 1.8377 - 1.7743 0.98 2670 136 0.1316 0.2002 REMARK 3 11 1.7743 - 1.7188 0.98 2670 143 0.1351 0.2275 REMARK 3 12 1.7188 - 1.6697 0.97 2612 152 0.1379 0.2040 REMARK 3 13 1.6697 - 1.6257 0.95 2585 122 0.1404 0.2177 REMARK 3 14 1.6257 - 1.5861 0.97 2662 149 0.1505 0.2386 REMARK 3 15 1.5861 - 1.5500 0.97 2631 141 0.1545 0.2285 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.14 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2748 REMARK 3 ANGLE : 1.814 3815 REMARK 3 CHIRALITY : 0.111 405 REMARK 3 PLANARITY : 0.008 467 REMARK 3 DIHEDRAL : 14.898 956 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAR-15. REMARK 100 THE PDBE ID CODE IS EBI-63504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42168 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.55 REMARK 200 RESOLUTION RANGE LOW (A) : 42.28 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.5 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.80 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.5 REMARK 200 R MERGE FOR SHELL (I) : 0.50 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 - 1 M AMMONIUM SULPHATE, 0.1 M REMARK 280 TRIS-HCL PH 6.0 - 9.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.98000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.55500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.98000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.55500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -4.57347 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 81.04105 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NC HEM A 201 LIES ON A SPECIAL POSITION. REMARK 375 NA HEM A 201 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 PRO A 3 REMARK 465 SER A 4 REMARK 465 VAL A 159 REMARK 465 SER A 160 REMARK 465 HIS A 161 REMARK 465 ASP A 162 REMARK 465 ARG A 163 REMARK 465 ASN A 164 REMARK 465 ALA A 165 REMARK 465 ARG A 166 REMARK 465 ALA A 167 REMARK 465 GLU A 168 REMARK 465 GLU A 169 REMARK 465 LEU A 170 REMARK 465 GLU A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ALA B 156 REMARK 465 TYR B 157 REMARK 465 SER B 158 REMARK 465 VAL B 159 REMARK 465 SER B 160 REMARK 465 HIS B 161 REMARK 465 ASP B 162 REMARK 465 ARG B 163 REMARK 465 ASN B 164 REMARK 465 ALA B 165 REMARK 465 ARG B 166 REMARK 465 ALA B 167 REMARK 465 GLU B 168 REMARK 465 GLU B 169 REMARK 465 LEU B 170 REMARK 465 GLU B 171 REMARK 465 HIS B 172 REMARK 465 HIS B 173 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 465 HIS B 177 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2001 O HOH B 2002 2.11 REMARK 500 O HOH B 2050 O HOH B 2053 2.15 REMARK 500 O HOH B 2070 O HOH B 2073 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 15 O HOH A 2064 2556 2.18 REMARK 500 CHA HEM B 201 CHB HEM B 201 2555 1.58 REMARK 500 CHA HEM B 201 C1B HEM B 201 2555 1.33 REMARK 500 CHA HEM B 201 C2B HEM B 201 2555 1.19 REMARK 500 CHA HEM B 201 CMB HEM B 201 2555 1.47 REMARK 500 CHB HEM B 201 C1A HEM B 201 2555 0.31 REMARK 500 CHB HEM B 201 C2A HEM B 201 2555 1.59 REMARK 500 CHB HEM B 201 C4A HEM B 201 2555 1.97 REMARK 500 CHB HEM B 201 NA HEM B 201 2555 1.07 REMARK 500 CHC HEM B 201 CHD HEM B 201 2555 0.50 REMARK 500 CHC HEM B 201 C4C HEM B 201 2555 1.30 REMARK 500 CHC HEM B 201 C1D HEM B 201 2555 1.15 REMARK 500 CHC HEM B 201 NC HEM B 201 2555 2.13 REMARK 500 CHC HEM B 201 ND HEM B 201 2555 2.06 REMARK 500 CHD HEM B 201 C1C HEM B 201 2555 1.50 REMARK 500 CHD HEM B 201 C4B HEM B 201 2555 1.79 REMARK 500 C1A HEM B 201 C4A HEM B 201 2555 1.60 REMARK 500 C1A HEM B 201 C1B HEM B 201 2555 1.45 REMARK 500 C2A HEM B 201 C3A HEM B 201 2555 1.72 REMARK 500 C2A HEM B 201 C4A HEM B 201 2555 1.77 REMARK 500 C2A HEM B 201 CMA HEM B 201 2555 1.43 REMARK 500 C3A HEM B 201 C3A HEM B 201 2555 0.37 REMARK 500 C3A HEM B 201 C4A HEM B 201 2555 1.36 REMARK 500 C3A HEM B 201 CMA HEM B 201 2555 1.35 REMARK 500 C4A HEM B 201 C4A HEM B 201 2555 0.62 REMARK 500 C4A HEM B 201 NA HEM B 201 2555 0.98 REMARK 500 CMA HEM B 201 CMA HEM B 201 2555 1.67 REMARK 500 CMA HEM B 201 CAA HEM B 201 2555 1.80 REMARK 500 CMA HEM B 201 CBA HEM B 201 2555 1.76 REMARK 500 C1B HEM B 201 C4D HEM B 201 2555 1.38 REMARK 500 C1B HEM B 201 NA HEM B 201 2555 1.59 REMARK 500 C1B HEM B 201 ND HEM B 201 2555 1.55 REMARK 500 C1B HEM B 201 FE HEM B 201 2555 2.05 REMARK 500 C2B HEM B 201 C3D HEM B 201 2555 1.47 REMARK 500 C2B HEM B 201 C4D HEM B 201 2555 0.27 REMARK 500 C2B HEM B 201 ND HEM B 201 2555 1.65 REMARK 500 C3B HEM B 201 C3D HEM B 201 2555 1.10 REMARK 500 C3B HEM B 201 C1D HEM B 201 2555 1.36 REMARK 500 C3B HEM B 201 C2D HEM B 201 2555 1.30 REMARK 500 C3B HEM B 201 C4D HEM B 201 2555 1.13 REMARK 500 C3B HEM B 201 ND HEM B 201 2555 1.24 REMARK 500 C4B HEM B 201 C1D HEM B 201 2555 0.86 REMARK 500 C4B HEM B 201 C2D HEM B 201 2555 2.09 REMARK 500 C4B HEM B 201 C4D HEM B 201 2555 1.98 REMARK 500 C4B HEM B 201 ND HEM B 201 2555 0.70 REMARK 500 C4B HEM B 201 FE HEM B 201 2555 2.06 REMARK 500 CMB HEM B 201 C3D HEM B 201 2555 2.02 REMARK 500 CMB HEM B 201 CAD HEM B 201 2555 2.01 REMARK 500 CMB HEM B 201 C4D HEM B 201 2555 1.80 REMARK 500 CAB HEM B 201 CMD HEM B 201 2555 1.51 REMARK 500 REMARK 500 THIS ENTRY HAS 78 SYMMETRY CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 49 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 57 -102.69 -148.37 REMARK 500 GLU B 84 54.29 -96.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HEM A 200 ND REMARK 620 2 HEM A 200 NA 93.3 REMARK 620 3 HEM A 200 NB 170.2 86.5 REMARK 620 4 HIS A 99 NE2 94.1 98.4 95.7 REMARK 620 5 HEM A 200 NC 87.0 169.4 91.4 92.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HEM B 200 NC REMARK 620 2 HIS B 99 NE2 92.0 REMARK 620 3 HEM B 200 NA 177.9 89.8 REMARK 620 4 HEM B 200 NB 88.9 89.0 92.2 REMARK 620 5 HEM B 200 ND 90.9 92.7 87.9 178.3 REMARK 620 6 IMD B1156 N3 90.7 176.0 87.5 88.2 90.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 155 NE2 REMARK 620 2 HIS A 155 NE2 167.2 REMARK 620 3 HEM A 201 NB 83.6 87.8 REMARK 620 4 HEM A 201 NC 83.7 86.2 85.1 REMARK 620 5 HEM A 201 ND 95.2 93.7 177.5 96.9 REMARK 620 6 HEM A 201 NA 94.5 94.3 85.9 171.0 92.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HEM B 201 NC REMARK 620 2 HEM B 201 NA 171.1 REMARK 620 3 HEM B 201 NB 80.4 90.7 REMARK 620 4 HIS B 155 NE2 93.8 85.5 91.4 REMARK 620 5 HEM B 201 ND 97.4 91.5 177.8 88.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B1156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1160 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UII RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE AZOTOBACTER VINELANDII GLOBIN- REMARK 900 COUPLED OXYGEN SENSOR IN THE AQUO-MET FORM REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE ISOLATED GLOBIN DOMAIN CORRESPONDS TO RESIDUES 1-169 REMARK 999 OF THE COMPLETE SEQUENCE. TWO RESIDUES FROM THE PLASMID REMARK 999 AND A HIS TAG ARE PRESENT AT THE C-TERMINAL. DBREF 4UIQ A 1 169 UNP Q7VTL8 Q7VTL8_BORPE 1 169 DBREF 4UIQ B 1 169 UNP Q7VTL8 Q7VTL8_BORPE 1 169 SEQADV 4UIQ LEU A 170 UNP Q7VTL8 EXPRESSION TAG SEQADV 4UIQ GLU A 171 UNP Q7VTL8 EXPRESSION TAG SEQADV 4UIQ HIS A 172 UNP Q7VTL8 EXPRESSION TAG SEQADV 4UIQ HIS A 173 UNP Q7VTL8 EXPRESSION TAG SEQADV 4UIQ HIS A 174 UNP Q7VTL8 EXPRESSION TAG SEQADV 4UIQ HIS A 175 UNP Q7VTL8 EXPRESSION TAG SEQADV 4UIQ HIS A 176 UNP Q7VTL8 EXPRESSION TAG SEQADV 4UIQ HIS A 177 UNP Q7VTL8 EXPRESSION TAG SEQADV 4UIQ SER A 16 UNP Q7VTL8 CYS 16 ENGINEERED MUTATION SEQADV 4UIQ SER A 45 UNP Q7VTL8 CYS 45 ENGINEERED MUTATION SEQADV 4UIQ SER A 114 UNP Q7VTL8 CYS 114 ENGINEERED MUTATION SEQADV 4UIQ SER A 154 UNP Q7VTL8 CYS 154 ENGINEERED MUTATION SEQADV 4UIQ LEU B 170 UNP Q7VTL8 EXPRESSION TAG SEQADV 4UIQ GLU B 171 UNP Q7VTL8 EXPRESSION TAG SEQADV 4UIQ HIS B 172 UNP Q7VTL8 EXPRESSION TAG SEQADV 4UIQ HIS B 173 UNP Q7VTL8 EXPRESSION TAG SEQADV 4UIQ HIS B 174 UNP Q7VTL8 EXPRESSION TAG SEQADV 4UIQ HIS B 175 UNP Q7VTL8 EXPRESSION TAG SEQADV 4UIQ HIS B 176 UNP Q7VTL8 EXPRESSION TAG SEQADV 4UIQ HIS B 177 UNP Q7VTL8 EXPRESSION TAG SEQADV 4UIQ SER B 16 UNP Q7VTL8 CYS 16 ENGINEERED MUTATION SEQADV 4UIQ SER B 45 UNP Q7VTL8 CYS 45 ENGINEERED MUTATION SEQADV 4UIQ SER B 114 UNP Q7VTL8 CYS 114 ENGINEERED MUTATION SEQADV 4UIQ SER B 154 UNP Q7VTL8 CYS 154 ENGINEERED MUTATION SEQRES 1 A 177 MET LYS PRO SER PRO GLU ILE LEU ALA LEU ARG TRP LYS SEQRES 2 A 177 ASP THR SER ALA HIS TYR SER PRO HIS GLU TRP VAL ALA SEQRES 3 A 177 ALA ARG ASN VAL VAL THR ALA ASN LYS ALA ALA LEU ALA SEQRES 4 A 177 ASP TYR PHE TYR GLU SER MET LEU ALA ASP PRO ASN ALA SEQRES 5 A 177 ALA PHE PHE LEU SER ASP GLN LEU VAL LYS THR LYS LEU SEQRES 6 A 177 HIS ALA SER MET GLN ASP TRP LEU GLU SER VAL TYR ALA SEQRES 7 A 177 ALA ALA PRO THR GLU GLU TYR GLU ARG THR VAL ALA PHE SEQRES 8 A 177 GLN ARG LYS VAL GLY GLU VAL HIS ALA ARG ILE ASP ILE SEQRES 9 A 177 PRO VAL HIS LEU VAL THR ARG GLY ALA SER ALA LEU ILE SEQRES 10 A 177 ARG ARG ILE CYS GLU LEU LEU ASP ARG ASP ALA SER LEU SEQRES 11 A 177 SER ALA ALA GLN ALA ALA ALA THR CYS ARG TYR VAL ALA SEQRES 12 A 177 ASP VAL THR MET THR ALA VAL GLU MET MET SER HIS ALA SEQRES 13 A 177 TYR SER VAL SER HIS ASP ARG ASN ALA ARG ALA GLU GLU SEQRES 14 A 177 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 177 MET LYS PRO SER PRO GLU ILE LEU ALA LEU ARG TRP LYS SEQRES 2 B 177 ASP THR SER ALA HIS TYR SER PRO HIS GLU TRP VAL ALA SEQRES 3 B 177 ALA ARG ASN VAL VAL THR ALA ASN LYS ALA ALA LEU ALA SEQRES 4 B 177 ASP TYR PHE TYR GLU SER MET LEU ALA ASP PRO ASN ALA SEQRES 5 B 177 ALA PHE PHE LEU SER ASP GLN LEU VAL LYS THR LYS LEU SEQRES 6 B 177 HIS ALA SER MET GLN ASP TRP LEU GLU SER VAL TYR ALA SEQRES 7 B 177 ALA ALA PRO THR GLU GLU TYR GLU ARG THR VAL ALA PHE SEQRES 8 B 177 GLN ARG LYS VAL GLY GLU VAL HIS ALA ARG ILE ASP ILE SEQRES 9 B 177 PRO VAL HIS LEU VAL THR ARG GLY ALA SER ALA LEU ILE SEQRES 10 B 177 ARG ARG ILE CYS GLU LEU LEU ASP ARG ASP ALA SER LEU SEQRES 11 B 177 SER ALA ALA GLN ALA ALA ALA THR CYS ARG TYR VAL ALA SEQRES 12 B 177 ASP VAL THR MET THR ALA VAL GLU MET MET SER HIS ALA SEQRES 13 B 177 TYR SER VAL SER HIS ASP ARG ASN ALA ARG ALA GLU GLU SEQRES 14 B 177 LEU GLU HIS HIS HIS HIS HIS HIS HET HEM A 200 44 HET HEM A 201 43 HET HEM B 200 43 HET HEM B 201 43 HET IMD B1156 5 HET GOL A1159 6 HET GOL A1160 6 HETNAM IMD IMIDAZOLE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 IMD C3 H5 N2 1+ FORMUL 4 HEM 4(C34 H32 FE N4 O4) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 HOH *171(H2 O) HELIX 1 1 LEU A 8 ALA A 17 1 10 HELIX 2 2 SER A 20 ASN A 34 1 15 HELIX 3 3 ASN A 34 ALA A 48 1 15 HELIX 4 4 ASP A 49 PHE A 54 1 6 HELIX 5 5 SER A 57 LYS A 64 1 8 HELIX 6 6 LYS A 64 GLU A 83 1 20 HELIX 7 7 GLU A 84 ASP A 103 1 20 HELIX 8 8 PRO A 105 ASP A 127 1 23 HELIX 9 9 SER A 131 ALA A 156 1 26 HELIX 10 10 SER B 4 ALA B 17 1 14 HELIX 11 11 SER B 20 ASN B 34 1 15 HELIX 12 12 ASN B 34 ALA B 48 1 15 HELIX 13 13 ASP B 49 PHE B 54 1 6 HELIX 14 14 ASP B 58 GLU B 83 1 26 HELIX 15 15 GLU B 84 ILE B 102 1 19 HELIX 16 16 PRO B 105 ASP B 127 1 23 HELIX 17 17 SER B 131 HIS B 155 1 25 SSBOND 1 CYS A 121 CYS A 139 1555 1555 2.03 SSBOND 2 CYS B 121 CYS B 139 1555 1555 1.96 LINK NE2 HIS A 99 FE HEM A 200 1555 1555 2.20 LINK NE2 HIS A 155 FE HEM A 201 1555 1555 2.26 LINK NE2 HIS A 155 FE HEM A 201 2556 1555 2.19 LINK FE HEM A 201 NE2 HIS A 155 1555 2556 2.19 LINK NE2 HIS B 99 FE HEM B 200 1555 1555 2.14 LINK NE2 HIS B 155 FE HEM B 201 1555 1555 2.44 LINK NE2 HIS B 155 FE HEM B 201 2555 1555 2.69 LINK FE HEM B 200 N3 IMD B1156 1555 1555 2.12 SITE 1 AC1 19 PHE A 42 TYR A 43 MET A 46 ALA A 52 SITE 2 AC1 19 PHE A 55 LEU A 60 LYS A 64 LEU A 65 SITE 3 AC1 19 SER A 68 MET A 69 TRP A 72 PHE A 91 SITE 4 AC1 19 VAL A 95 VAL A 98 HIS A 99 ILE A 102 SITE 5 AC1 19 ILE A 104 LEU A 108 HOH A2082 SITE 1 AC2 6 PRO A 5 VAL A 106 GLU A 151 SER A 154 SITE 2 AC2 6 HIS A 155 SER A 158 SITE 1 AC3 13 PHE B 42 ALA B 52 PHE B 55 LEU B 65 SITE 2 AC3 13 SER B 68 MET B 69 TRP B 72 VAL B 95 SITE 3 AC3 13 HIS B 99 ILE B 102 LEU B 108 IMD B1156 SITE 4 AC3 13 HOH B2093 SITE 1 AC4 9 ARG B 11 VAL B 106 THR B 110 MET B 147 SITE 2 AC4 9 VAL B 150 GLU B 151 SER B 154 HIS B 155 SITE 3 AC4 9 HOH B2092 SITE 1 AC5 5 PHE B 42 LEU B 65 SER B 68 MET B 69 SITE 2 AC5 5 HEM B 200 SITE 1 AC6 5 ARG A 118 CYS A 121 GLU A 122 ASP A 125 SITE 2 AC6 5 HOH A2068 SITE 1 AC7 4 ALA A 9 LEU A 10 GLU A 86 GLU B 86 CRYST1 69.960 53.110 81.170 90.00 93.23 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014294 0.000000 0.000807 0.00000 SCALE2 0.000000 0.018829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012339 0.00000