HEADER TRANSFERASE 09-APR-15 4UJB TITLE PROTEIN KINASE A IN COMPLEX WITH AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, UNP RESIDUES 1-351; COMPND 5 SYNONYM: PKA C-ALPHA, PKA; COMPND 6 EC: 2.7.11.11; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEPTIDE; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.A.ALAM,R.A.ENGH REVDAT 4 10-JAN-24 4UJB 1 REMARK LINK REVDAT 3 06-FEB-19 4UJB 1 REMARK REVDAT 2 30-JAN-19 4UJB 1 REMARK ATOM REVDAT 1 13-APR-16 4UJB 0 JRNL AUTH B.S.LAUBER,L.A.HARDEGGER,A.K.ASRAFUL,B.A.LUND,O.DUMELE, JRNL AUTH 2 M.HARDER,B.KUHN,R.A.ENGH,F.DIEDERICH JRNL TITL ADDRESSING THE GLYCINE-RICH LOOP OF PROTEIN KINASES BY A JRNL TITL 2 MULTI-FACETTED INTERACTION NETWORK: INHIBITION OF PKA AND A JRNL TITL 3 PKB MIMIC. JRNL REF CHEMISTRY V. 22 211 2016 JRNL REFN ISSN 0947-6539 JRNL PMID 26578105 JRNL DOI 10.1002/CHEM.201503552 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 32721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8408 - 4.4596 0.99 2742 145 0.1405 0.1580 REMARK 3 2 4.4596 - 3.5402 1.00 2654 140 0.1244 0.1481 REMARK 3 3 3.5402 - 3.0928 1.00 2592 136 0.1430 0.1873 REMARK 3 4 3.0928 - 2.8101 1.00 2610 137 0.1511 0.1931 REMARK 3 5 2.8101 - 2.6087 1.00 2581 136 0.1617 0.1827 REMARK 3 6 2.6087 - 2.4549 1.00 2583 136 0.1545 0.1833 REMARK 3 7 2.4549 - 2.3320 1.00 2580 136 0.1546 0.2121 REMARK 3 8 2.3320 - 2.2305 1.00 2552 134 0.1663 0.2144 REMARK 3 9 2.2305 - 2.1446 1.00 2568 135 0.1838 0.2306 REMARK 3 10 2.1446 - 2.0706 1.00 2554 135 0.2016 0.2590 REMARK 3 11 2.0706 - 2.0059 1.00 2539 133 0.2148 0.2879 REMARK 3 12 2.0059 - 1.9485 0.98 2529 134 0.2415 0.2832 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3125 REMARK 3 ANGLE : 0.940 4226 REMARK 3 CHIRALITY : 0.040 441 REMARK 3 PLANARITY : 0.005 536 REMARK 3 DIHEDRAL : 14.223 1152 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5142 5.7599 -9.9656 REMARK 3 T TENSOR REMARK 3 T11: 0.1487 T22: 0.2480 REMARK 3 T33: 0.2357 T12: -0.0211 REMARK 3 T13: -0.0556 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.5023 L22: 0.4339 REMARK 3 L33: 0.7329 L12: -0.1648 REMARK 3 L13: -0.2211 L23: -0.4221 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: 0.0248 S13: -0.0962 REMARK 3 S21: -0.1468 S22: -0.0118 S23: 0.2315 REMARK 3 S31: 0.1549 S32: -0.3508 S33: 0.0378 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.3174 19.6201 0.0621 REMARK 3 T TENSOR REMARK 3 T11: 0.1142 T22: 0.1923 REMARK 3 T33: 0.2329 T12: 0.0185 REMARK 3 T13: 0.0173 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.1470 L22: 0.0973 REMARK 3 L33: 0.3488 L12: -0.0248 REMARK 3 L13: 0.0410 L23: -0.1844 REMARK 3 S TENSOR REMARK 3 S11: -0.0668 S12: 0.0607 S13: 0.3652 REMARK 3 S21: 0.0940 S22: 0.1038 S23: 0.0938 REMARK 3 S31: -0.2102 S32: -0.1872 S33: -0.0068 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5193 8.8055 -2.1238 REMARK 3 T TENSOR REMARK 3 T11: 0.1217 T22: 0.1829 REMARK 3 T33: 0.1825 T12: 0.0048 REMARK 3 T13: -0.0022 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.3435 L22: 0.6154 REMARK 3 L33: 0.8000 L12: -0.2666 REMARK 3 L13: 0.0886 L23: 0.1174 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: -0.0542 S13: 0.0522 REMARK 3 S21: 0.0004 S22: 0.0049 S23: 0.1304 REMARK 3 S31: 0.0279 S32: -0.1759 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.8701 -3.5774 -4.5737 REMARK 3 T TENSOR REMARK 3 T11: 0.1638 T22: 0.1400 REMARK 3 T33: 0.1234 T12: -0.0139 REMARK 3 T13: 0.0090 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.3705 L22: 0.5399 REMARK 3 L33: 0.7698 L12: -0.1178 REMARK 3 L13: 0.1622 L23: -0.2606 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: 0.0144 S13: -0.1034 REMARK 3 S21: -0.0819 S22: -0.0200 S23: 0.0265 REMARK 3 S31: 0.3013 S32: -0.0560 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4968 -13.1860 3.6927 REMARK 3 T TENSOR REMARK 3 T11: 0.3330 T22: 0.1756 REMARK 3 T33: 0.2069 T12: 0.0592 REMARK 3 T13: 0.0055 T23: 0.0337 REMARK 3 L TENSOR REMARK 3 L11: 0.2051 L22: 1.2744 REMARK 3 L33: 1.2116 L12: 0.2531 REMARK 3 L13: -0.4887 L23: -0.4719 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: -0.0524 S13: -0.2903 REMARK 3 S21: -0.1501 S22: -0.1318 S23: -0.3067 REMARK 3 S31: 0.5807 S32: 0.3660 S33: -0.1075 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 273 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.1761 -13.9980 -3.1127 REMARK 3 T TENSOR REMARK 3 T11: 0.3544 T22: 0.1808 REMARK 3 T33: 0.2214 T12: -0.1209 REMARK 3 T13: 0.0149 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.7363 L22: 0.1874 REMARK 3 L33: 0.7633 L12: 0.1580 REMARK 3 L13: 0.1095 L23: -0.3111 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: 0.0727 S13: -0.3344 REMARK 3 S21: -0.0521 S22: 0.0055 S23: 0.1585 REMARK 3 S31: 0.5639 S32: -0.1623 S33: 0.2214 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0342 19.8480 1.9135 REMARK 3 T TENSOR REMARK 3 T11: 0.1741 T22: 0.1596 REMARK 3 T33: 0.1875 T12: 0.0122 REMARK 3 T13: -0.0210 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.5489 L22: 0.8563 REMARK 3 L33: 0.6763 L12: -0.5235 REMARK 3 L13: -0.1757 L23: -0.0967 REMARK 3 S TENSOR REMARK 3 S11: -0.0555 S12: -0.0906 S13: 0.1122 REMARK 3 S21: 0.1029 S22: 0.0594 S23: -0.0496 REMARK 3 S31: -0.2810 S32: -0.0465 S33: -0.0291 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8889 -8.2694 16.1186 REMARK 3 T TENSOR REMARK 3 T11: 0.1999 T22: 0.2229 REMARK 3 T33: 0.1587 T12: 0.0177 REMARK 3 T13: 0.0138 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.0055 L22: 0.0432 REMARK 3 L33: 0.0252 L12: -0.0032 REMARK 3 L13: 0.0123 L23: -0.0042 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: 0.0595 S13: -0.0517 REMARK 3 S21: -0.0288 S22: -0.1233 S23: 0.2245 REMARK 3 S31: 0.1439 S32: 0.3457 S33: -0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6756 3.5216 4.4028 REMARK 3 T TENSOR REMARK 3 T11: 0.1844 T22: 0.1450 REMARK 3 T33: 0.1799 T12: -0.0078 REMARK 3 T13: -0.0046 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.1382 L22: 0.1645 REMARK 3 L33: 0.0979 L12: 0.0092 REMARK 3 L13: 0.1075 L23: 0.0542 REMARK 3 S TENSOR REMARK 3 S11: -0.1373 S12: -0.1858 S13: 0.1506 REMARK 3 S21: 0.0325 S22: 0.0320 S23: -0.1087 REMARK 3 S31: -0.0933 S32: 0.0817 S33: -0.0139 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UJB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-15. REMARK 100 THE DEPOSITION ID IS D_1290063557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32724 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 43.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3VQH REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML PROTEIN, 25MM BISTRIS/MES REMARK 280 PH6.9, 50MM KCL, 1.5MM OCTANOYL-N-METHYLGLUCAMIDE, 1MM PROTEIN REMARK 280 KINASE INHIBITOR PEPTIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.31000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.17450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.68550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.17450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.31000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.68550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 LYS A 345 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2172 O HOH A 2333 1.87 REMARK 500 N GLY A 322 O HOH A 2347 1.94 REMARK 500 O ALA A 5 O HOH A 2001 1.98 REMARK 500 O HOH A 2339 O HOH A 2340 2.01 REMARK 500 O HOH B 2031 O HOH B 2033 2.06 REMARK 500 O HOH A 2371 O HOH A 2374 2.06 REMARK 500 O HOH A 2226 O HOH A 2227 2.12 REMARK 500 O PRO A 321 O HOH A 2345 2.13 REMARK 500 O HOH A 2242 O HOH A 2382 2.14 REMARK 500 OE1 GLU A 17 O HOH A 2027 2.14 REMARK 500 O HOH A 2310 O HOH A 2311 2.15 REMARK 500 O HOH A 2107 O HOH A 2227 2.16 REMARK 500 O HOH A 2231 O HOH A 2252 2.17 REMARK 500 O HOH A 2065 O HOH A 2077 2.18 REMARK 500 O HOH A 2074 O HOH A 2175 2.19 REMARK 500 O HOH A 2047 O HOH A 2123 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2254 O HOH A 2288 2454 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 166 41.76 -149.75 REMARK 500 THR A 183 -162.00 -125.29 REMARK 500 ASN A 216 -154.01 -141.32 REMARK 500 LEU A 273 47.39 -85.35 REMARK 500 LYS A 319 75.03 -102.21 REMARK 500 HIS B 23 41.17 -170.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2052 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A2159 DISTANCE = 6.19 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 NA (37A): NA REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8BQ A 1351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 1025 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UJ1 RELATED DB: PDB REMARK 900 PKA INHIBITOR COMPLEX REMARK 900 RELATED ID: 4UJ2 RELATED DB: PDB REMARK 900 PKA INHIBITOR COMPLEX REMARK 900 RELATED ID: 4UJ9 RELATED DB: PDB REMARK 900 PROTEIN KINASE A IN COMPLEX WITH AN INHIBITOR REMARK 900 RELATED ID: 4UJA RELATED DB: PDB REMARK 900 PROTEIN KINASE A IN COMPLEX WITH AN INHIBITOR DBREF 4UJB A 0 350 UNP P17612 KAPCA_HUMAN 1 351 DBREF 4UJB B 5 24 PDB 4UJB 4UJB 5 24 SEQRES 1 A 351 MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SEP GLU GLN SEQRES 2 A 351 GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP SEQRES 3 A 351 PHE LEU LYS LYS TRP GLU SER PRO ALA GLN ASN THR ALA SEQRES 4 A 351 HIS LEU ASP GLN PHE GLU ARG ILE LYS THR LEU GLY THR SEQRES 5 A 351 GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU SEQRES 6 A 351 THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN SEQRES 7 A 351 LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN SEQRES 8 A 351 GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU SEQRES 9 A 351 VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU SEQRES 10 A 351 TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU MET PHE SEQRES 11 A 351 SER HIS LEU ARG ARG ILE GLY ARG PHE SER GLU PRO HIS SEQRES 12 A 351 ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU SEQRES 13 A 351 TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS SEQRES 14 A 351 PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN SEQRES 15 A 351 VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG SEQRES 16 A 351 THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO SEQRES 17 A 351 GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP SEQRES 18 A 351 TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA SEQRES 19 A 351 GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE SEQRES 20 A 351 TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER SEQRES 21 A 351 HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU SEQRES 22 A 351 LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS SEQRES 23 A 351 ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA SEQRES 24 A 351 THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU SEQRES 25 A 351 ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SEQRES 26 A 351 SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEQRES 27 A 351 SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE SER GLU PHE SEQRES 1 B 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 B 20 ARG ARG ASN ALA ILE HIS ASP MODRES 4UJB SEP A 10 SER PHOSPHOSERINE MODRES 4UJB TPO A 197 THR PHOSPHOTHREONINE MODRES 4UJB SEP A 338 SER PHOSPHOSERINE HET SEP A 10 10 HET TPO A 197 11 HET SEP A 338 10 HET 8BQ A1351 41 HET MPD A1352 22 HET MPD B1025 22 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM 8BQ 7-[(3S,4R)-4-(3-FLUOROPHENYL)CARBONYLPYRROLIDIN-3-YL]- HETNAM 2 8BQ 3H-QUINAZOLIN-4-ONE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 8BQ C19 H16 F N3 O2 FORMUL 4 MPD 2(C6 H14 O2) FORMUL 6 HOH *420(H2 O) HELIX 1 1 GLY A 9 SER A 32 1 24 HELIX 2 2 HIS A 39 ASP A 41 5 3 HELIX 3 3 LYS A 76 LEU A 82 1 7 HELIX 4 4 GLN A 84 GLN A 96 1 13 HELIX 5 5 GLU A 127 GLY A 136 1 10 HELIX 6 6 SER A 139 LEU A 160 1 22 HELIX 7 7 LYS A 168 GLU A 170 5 3 HELIX 8 8 THR A 201 LEU A 205 5 5 HELIX 9 9 ALA A 206 LEU A 211 1 6 HELIX 10 10 LYS A 217 GLY A 234 1 18 HELIX 11 11 GLN A 242 GLY A 253 1 12 HELIX 12 12 SER A 262 LEU A 273 1 12 HELIX 13 13 VAL A 288 ASN A 293 1 6 HELIX 14 14 HIS A 294 ALA A 298 5 5 HELIX 15 15 ASP A 301 GLN A 307 1 7 HELIX 16 16 THR B 5 ALA B 12 1 8 SHEET 1 AA 5 PHE A 43 GLY A 52 0 SHEET 2 AA 5 GLY A 55 HIS A 62 -1 O GLY A 55 N GLY A 52 SHEET 3 AA 5 HIS A 68 ASP A 75 -1 O TYR A 69 N VAL A 60 SHEET 4 AA 5 ASN A 115 GLU A 121 -1 O LEU A 116 N LEU A 74 SHEET 5 AA 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AB 2 LEU A 162 ILE A 163 0 SHEET 2 AB 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AC 2 LEU A 172 ILE A 174 0 SHEET 2 AC 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C GLY A 9 N SEP A 10 1555 1555 1.33 LINK C SEP A 10 N GLU A 11 1555 1555 1.33 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.32 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 SITE 1 AC1 17 GLY A 50 THR A 51 GLY A 52 VAL A 57 SITE 2 AC1 17 ALA A 70 LYS A 72 MET A 120 GLU A 121 SITE 3 AC1 17 TYR A 122 VAL A 123 GLU A 127 GLU A 170 SITE 4 AC1 17 LEU A 173 THR A 183 ASP A 184 PHE A 327 SITE 5 AC1 17 HOH A2120 SITE 1 AC2 4 ARG A 134 ASN A 326 PHE A 327 ASP A 328 SITE 1 AC3 3 ARG A 137 TYR B 7 HOH B2037 CRYST1 72.620 75.371 80.349 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013770 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012446 0.00000