HEADER TELOMERASE-BINDING PROTEIN 14-MAY-14 4UM2 TITLE CRYSTAL STRUCTURE OF THE TPR DOMAIN OF SMG6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TELOMERASE-BINDING PROTEIN EST1A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TETRATRICOPEPTIDE REPEAT, RESIDUES 580-1166; COMPND 5 SYNONYM: SMG6, EST1-LIKE PROTEIN A, EVER SHORTER TELOMERES 1A, SMG-6 COMPND 6 HOMOLOG, TELOMERASE SUBUNIT EST1A, HSMG5/7A; COMPND 7 EC: 3.1.-.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS TELOMERASE-BINDING PROTEIN, NONSENSE MEDIATED MRNA DECAY (NMD), TPR KEYWDS 2 DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR S.CHAKRABARTI,F.BONNEAU,S.SCHUESSLER,E.EPPINGER,E.CONTI REVDAT 3 08-MAY-24 4UM2 1 REMARK REVDAT 2 27-AUG-14 4UM2 1 JRNL REVDAT 1 23-JUL-14 4UM2 0 JRNL AUTH S.CHAKRABARTI,F.BONNEAU,S.SCHUSSLER,E.EPPINGER,E.CONTI JRNL TITL PHOSPHO-DEPENDENT AND PHOSPHO-INDEPENDENT INTERACTIONS OF JRNL TITL 2 THE HELICASE UPF1 WITH THE NMD FACTORS SMG5-SMG7 AND SMG6. JRNL REF NUCLEIC ACIDS RES. V. 42 9447 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 25013172 JRNL DOI 10.1093/NAR/GKU578 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.840 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2132 - 6.1366 1.00 2642 175 0.1745 0.2056 REMARK 3 2 6.1366 - 4.8722 1.00 2666 167 0.1996 0.2002 REMARK 3 3 4.8722 - 4.2567 1.00 2656 157 0.1580 0.1626 REMARK 3 4 4.2567 - 3.8677 1.00 2689 133 0.1700 0.2120 REMARK 3 5 3.8677 - 3.5906 1.00 2695 150 0.1888 0.2191 REMARK 3 6 3.5906 - 3.3789 1.00 2654 146 0.2079 0.2481 REMARK 3 7 3.3789 - 3.2098 1.00 2716 115 0.2180 0.2255 REMARK 3 8 3.2098 - 3.0701 1.00 2705 118 0.2257 0.2023 REMARK 3 9 3.0701 - 2.9519 1.00 2698 137 0.2378 0.3433 REMARK 3 10 2.9519 - 2.8500 1.00 2652 154 0.2403 0.2901 REMARK 3 11 2.8500 - 2.7609 1.00 2676 167 0.2396 0.2767 REMARK 3 12 2.7609 - 2.6820 1.00 2631 132 0.2494 0.3149 REMARK 3 13 2.6820 - 2.6114 1.00 2700 156 0.2365 0.3215 REMARK 3 14 2.6114 - 2.5477 1.00 2683 124 0.2310 0.3303 REMARK 3 15 2.5477 - 2.4898 1.00 2654 165 0.2228 0.2817 REMARK 3 16 2.4898 - 2.4368 1.00 2703 121 0.2289 0.2658 REMARK 3 17 2.4368 - 2.3881 1.00 2687 126 0.2218 0.2736 REMARK 3 18 2.3881 - 2.3430 1.00 2691 149 0.2314 0.2657 REMARK 3 19 2.3430 - 2.3012 1.00 2649 143 0.2293 0.2495 REMARK 3 20 2.3012 - 2.2621 1.00 2704 129 0.2488 0.2756 REMARK 3 21 2.2621 - 2.2257 0.99 2647 143 0.2848 0.3388 REMARK 3 22 2.2257 - 2.1914 1.00 2726 123 0.2647 0.3359 REMARK 3 23 2.1914 - 2.1592 1.00 2689 133 0.2683 0.2954 REMARK 3 24 2.1592 - 2.1288 1.00 2643 133 0.2730 0.3400 REMARK 3 25 2.1288 - 2.1000 1.00 2752 141 0.2904 0.3245 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.10 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3899 REMARK 3 ANGLE : 1.081 5310 REMARK 3 CHIRALITY : 0.044 631 REMARK 3 PLANARITY : 0.005 677 REMARK 3 DIHEDRAL : 13.565 1378 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UM2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1290060624. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : SI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37397 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 49.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, PHENIX AUTOSOL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM MES PH 5.5, 200MM AMMONIUM REMARK 280 ACETATE, 2.5% 2-METHYL-2,4-PENTANEDIOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.04000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.36450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.33800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.36450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.04000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.33800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 711 REMARK 465 LYS A 712 REMARK 465 PRO A 713 REMARK 465 LYS A 823 REMARK 465 GLN A 824 REMARK 465 HIS A 825 REMARK 465 GLU A 826 REMARK 465 GLU A 827 REMARK 465 PHE A 828 REMARK 465 ASP A 829 REMARK 465 LEU A 830 REMARK 465 SER A 831 REMARK 465 PRO A 832 REMARK 465 ASP A 833 REMARK 465 GLN A 834 REMARK 465 TRP A 835 REMARK 465 ARG A 836 REMARK 465 LYS A 837 REMARK 465 GLY A 838 REMARK 465 LYS A 839 REMARK 465 LYS A 840 REMARK 465 SER A 841 REMARK 465 THR A 842 REMARK 465 PHE A 843 REMARK 465 ARG A 844 REMARK 465 HIS A 845 REMARK 465 VAL A 846 REMARK 465 GLY A 847 REMARK 465 ASP A 848 REMARK 465 ASP A 849 REMARK 465 THR A 850 REMARK 465 THR A 851 REMARK 465 ARG A 852 REMARK 465 LEU A 853 REMARK 465 GLU A 854 REMARK 465 ILE A 855 REMARK 465 TRP A 856 REMARK 465 ILE A 857 REMARK 465 HIS A 858 REMARK 465 PRO A 859 REMARK 465 SER A 860 REMARK 465 HIS A 861 REMARK 465 PRO A 862 REMARK 465 ARG A 863 REMARK 465 SER A 864 REMARK 465 SER A 865 REMARK 465 GLN A 866 REMARK 465 GLY A 867 REMARK 465 THR A 868 REMARK 465 GLU A 869 REMARK 465 SER A 870 REMARK 465 GLY A 871 REMARK 465 LYS A 872 REMARK 465 ASP A 873 REMARK 465 SER A 874 REMARK 465 GLU A 875 REMARK 465 GLN A 876 REMARK 465 GLU A 877 REMARK 465 ASN A 878 REMARK 465 LEU A 955 REMARK 465 LYS A 956 REMARK 465 ASP A 957 REMARK 465 CYS A 958 REMARK 465 PHE A 959 REMARK 465 SER A 960 REMARK 465 GLU A 961 REMARK 465 GLU A 962 REMARK 465 CYS A 963 REMARK 465 ALA A 994 REMARK 465 LYS A 995 REMARK 465 ALA A 996 REMARK 465 GLN A 997 REMARK 465 PRO A 1160 REMARK 465 ASP A 1161 REMARK 465 THR A 1162 REMARK 465 MET A 1163 REMARK 465 GLY A 1164 REMARK 465 LYS A 1165 REMARK 465 GLU A 1166 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A-581 OG REMARK 470 MET A-580 CG SD CE REMARK 470 LEU A 581 CG CD1 CD2 REMARK 470 HIS A 582 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 586 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 593 CG CD1 CD2 REMARK 470 ARG A 601 CZ NH1 NH2 REMARK 470 ARG A 603 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 604 CG1 CG2 CD1 REMARK 470 GLU A 607 CG CD OE1 OE2 REMARK 470 GLU A 610 CG CD OE1 OE2 REMARK 470 LYS A 611 CG CD CE NZ REMARK 470 GLU A 618 CD OE1 OE2 REMARK 470 GLN A 621 CD OE1 NE2 REMARK 470 ARG A 625 CD NE CZ NH1 NH2 REMARK 470 LEU A 629 CD1 CD2 REMARK 470 ASN A 636 CG OD1 ND2 REMARK 470 ASN A 638 CG OD1 ND2 REMARK 470 GLN A 641 CG CD OE1 NE2 REMARK 470 LYS A 645 CG CD CE NZ REMARK 470 LYS A 654 CD CE NZ REMARK 470 GLN A 657 CD OE1 NE2 REMARK 470 LYS A 660 CD CE NZ REMARK 470 GLU A 665 CG CD OE1 OE2 REMARK 470 ASN A 666 OD1 ND2 REMARK 470 GLN A 669 CG CD OE1 NE2 REMARK 470 ILE A 670 CD1 REMARK 470 ARG A 673 CD NE CZ NH1 NH2 REMARK 470 GLU A 676 OE1 OE2 REMARK 470 GLN A 690 CD OE1 NE2 REMARK 470 LYS A 697 NZ REMARK 470 LYS A 699 CG CD CE NZ REMARK 470 ILE A 709 CG1 CG2 CD1 REMARK 470 ARG A 710 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 714 CG CD1 CD2 REMARK 470 ARG A 715 CD NE CZ NH1 NH2 REMARK 470 LYS A 716 CD CE NZ REMARK 470 LYS A 719 CE NZ REMARK 470 LYS A 750 CE NZ REMARK 470 LYS A 764 CE NZ REMARK 470 LYS A 782 CG CD CE NZ REMARK 470 ASN A 797 OD1 ND2 REMARK 470 LYS A 803 CD CE NZ REMARK 470 GLU A 804 CG CD OE1 OE2 REMARK 470 GLU A 811 CG CD OE1 OE2 REMARK 470 GLU A 812 CD OE1 OE2 REMARK 470 LYS A 814 CE NZ REMARK 470 ARG A 815 NE CZ NH1 NH2 REMARK 470 LYS A 816 CG CD CE NZ REMARK 470 GLU A 818 CG CD OE1 OE2 REMARK 470 GLN A 819 CG CD OE1 NE2 REMARK 470 GLU A 821 CG CD OE1 OE2 REMARK 470 LYS A 822 CG CD CE NZ REMARK 470 SER A 882 OG REMARK 470 LYS A 890 CD CE NZ REMARK 470 ARG A 906 CZ NH1 NH2 REMARK 470 LYS A 921 CG CD CE NZ REMARK 470 GLN A 954 CG CD OE1 NE2 REMARK 470 ARG A 964 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 984 CZ NH1 NH2 REMARK 470 LEU A 998 CG CD1 CD2 REMARK 470 GLN A1004 CG CD OE1 NE2 REMARK 470 ASP A1005 CG OD1 OD2 REMARK 470 GLN A1007 CG CD OE1 NE2 REMARK 470 LYS A1011 CG CD CE NZ REMARK 470 ASP A1048 CG OD1 OD2 REMARK 470 LYS A1080 CG CD CE NZ REMARK 470 ASP A1084 CG OD1 OD2 REMARK 470 GLU A1092 CG CD OE1 OE2 REMARK 470 LEU A1104 CG CD1 CD2 REMARK 470 GLN A1108 CG CD OE1 NE2 REMARK 470 ASP A1109 CG OD1 OD2 REMARK 470 LYS A1119 NZ REMARK 470 TYR A1133 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A1142 CG CD OE1 OE2 REMARK 470 GLU A1143 CG CD OE1 OE2 REMARK 470 LYS A1152 CE NZ REMARK 470 VAL A1159 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 737 O HOH A 2007 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 783 CA - CB - CG ANGL. DEV. = -15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 630 87.33 -156.28 REMARK 500 PHE A 648 -63.78 -125.67 REMARK 500 LYS A 697 67.41 63.25 REMARK 500 ALA A 746 45.77 -158.53 REMARK 500 ALA A 762 85.48 -152.12 REMARK 500 ASN A 797 78.15 -109.60 REMARK 500 SER A 999 -168.97 -79.21 REMARK 500 ASP A1109 119.33 -34.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1200 REMARK 999 REMARK 999 SEQUENCE REMARK 999 STRUCTURE COVERS RESIDUES 580-1159 OF THE ABOVE SEQUENCE DBREF 4UM2 A 580 1166 UNP Q86US8 EST1A_HUMAN 580 1166 SEQADV 4UM2 SER A -581 UNP Q86US8 EXPRESSION TAG SEQADV 4UM2 MET A -580 UNP Q86US8 EXPRESSION TAG SEQRES 1 A 589 SER MET GLU LEU HIS ARG LEU LEU ARG VAL ALA ASP ASN SEQRES 2 A 589 GLN GLU LEU GLN LEU SER ASN LEU LEU SER ARG ASP ARG SEQRES 3 A 589 ILE SER PRO GLU GLY LEU GLU LYS MET ALA GLN LEU ARG SEQRES 4 A 589 ALA GLU LEU LEU GLN LEU TYR GLU ARG CYS ILE LEU LEU SEQRES 5 A 589 ASP ILE GLU PHE SER ASP ASN GLN ASN VAL ASP GLN ILE SEQRES 6 A 589 LEU TRP LYS ASN ALA PHE TYR GLN VAL ILE GLU LYS PHE SEQRES 7 A 589 ARG GLN LEU VAL LYS ASP PRO ASN VAL GLU ASN PRO GLU SEQRES 8 A 589 GLN ILE ARG ASN ARG LEU LEU GLU LEU LEU ASP GLU GLY SEQRES 9 A 589 SER ASP PHE PHE ASP SER LEU LEU GLN LYS LEU GLN VAL SEQRES 10 A 589 THR TYR LYS PHE LYS LEU GLU ASP TYR MET ASP GLY LEU SEQRES 11 A 589 ALA ILE ARG SER LYS PRO LEU ARG LYS THR VAL LYS TYR SEQRES 12 A 589 ALA LEU ILE SER ALA GLN ARG CYS MET ILE CYS GLN GLY SEQRES 13 A 589 ASP ILE ALA ARG TYR ARG GLU GLN ALA SER ASP THR ALA SEQRES 14 A 589 ASN TYR GLY LYS ALA ARG SER TRP TYR LEU LYS ALA GLN SEQRES 15 A 589 HIS ILE ALA PRO LYS ASN GLY ARG PRO TYR ASN GLN LEU SEQRES 16 A 589 ALA LEU LEU ALA VAL TYR THR ARG ARG LYS LEU ASP ALA SEQRES 17 A 589 VAL TYR TYR TYR MET ARG SER LEU ALA ALA SER ASN PRO SEQRES 18 A 589 ILE LEU THR ALA LYS GLU SER LEU MET SER LEU PHE GLU SEQRES 19 A 589 GLU THR LYS ARG LYS ALA GLU GLN MET GLU LYS LYS GLN SEQRES 20 A 589 HIS GLU GLU PHE ASP LEU SER PRO ASP GLN TRP ARG LYS SEQRES 21 A 589 GLY LYS LYS SER THR PHE ARG HIS VAL GLY ASP ASP THR SEQRES 22 A 589 THR ARG LEU GLU ILE TRP ILE HIS PRO SER HIS PRO ARG SEQRES 23 A 589 SER SER GLN GLY THR GLU SER GLY LYS ASP SER GLU GLN SEQRES 24 A 589 GLU ASN GLY LEU GLY SER LEU SER PRO SER ASP LEU ASN SEQRES 25 A 589 LYS ARG PHE ILE LEU SER PHE LEU HIS ALA HIS GLY LYS SEQRES 26 A 589 LEU PHE THR ARG ILE GLY MET GLU THR PHE PRO ALA VAL SEQRES 27 A 589 ALA GLU LYS VAL LEU LYS GLU PHE GLN VAL LEU LEU GLN SEQRES 28 A 589 HIS SER PRO SER PRO ILE GLY SER THR ARG MET LEU GLN SEQRES 29 A 589 LEU MET THR ILE ASN MET PHE ALA VAL HIS ASN SER GLN SEQRES 30 A 589 LEU LYS ASP CYS PHE SER GLU GLU CYS ARG SER VAL ILE SEQRES 31 A 589 GLN GLU GLN ALA ALA ALA LEU GLY LEU ALA MET PHE SER SEQRES 32 A 589 LEU LEU VAL ARG ARG CYS THR CYS LEU LEU LYS GLU SER SEQRES 33 A 589 ALA LYS ALA GLN LEU SER SER PRO GLU ASP GLN ASP ASP SEQRES 34 A 589 GLN ASP ASP ILE LYS VAL SER SER PHE VAL PRO ASP LEU SEQRES 35 A 589 LYS GLU LEU LEU PRO SER VAL LYS VAL TRP SER ASP TRP SEQRES 36 A 589 MET LEU GLY TYR PRO ASP THR TRP ASN PRO PRO PRO THR SEQRES 37 A 589 SER LEU ASP LEU PRO SER HIS VAL ALA VAL ASP VAL TRP SEQRES 38 A 589 SER THR LEU ALA ASP PHE CYS ASN ILE LEU THR ALA VAL SEQRES 39 A 589 ASN GLN SER GLU VAL PRO LEU TYR LYS ASP PRO ASP ASP SEQRES 40 A 589 ASP LEU THR LEU LEU ILE LEU GLU GLU ASP ARG LEU LEU SEQRES 41 A 589 SER GLY PHE VAL PRO LEU LEU ALA ALA PRO GLN ASP PRO SEQRES 42 A 589 CYS TYR VAL GLU LYS THR SER ASP LYS VAL ILE ALA ALA SEQRES 43 A 589 ASP CYS LYS ARG VAL THR VAL LEU LYS TYR PHE LEU GLU SEQRES 44 A 589 ALA LEU CYS GLY GLN GLU GLU PRO LEU LEU ALA PHE LYS SEQRES 45 A 589 GLY GLY LYS TYR VAL SER VAL ALA PRO VAL PRO ASP THR SEQRES 46 A 589 MET GLY LYS GLU HET GOL A1200 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *64(H2 O) HELIX 1 1 MET A -580 SER A 600 1 22 HELIX 2 2 PRO A 606 LEU A 629 1 24 HELIX 3 3 VAL A 639 LEU A 643 1 5 HELIX 4 4 GLN A 650 LYS A 660 1 11 HELIX 5 5 PRO A 667 TYR A 696 1 30 HELIX 6 6 LYS A 716 ALA A 742 1 27 HELIX 7 7 GLY A 749 ILE A 761 1 13 HELIX 8 8 GLY A 766 TYR A 778 1 13 HELIX 9 9 LYS A 782 LEU A 793 1 12 HELIX 10 10 THR A 801 MET A 820 1 20 HELIX 11 11 PRO A 885 THR A 905 1 21 HELIX 12 12 PHE A 912 GLN A 928 1 17 HELIX 13 13 SER A 936 HIS A 951 1 16 HELIX 14 14 VAL A 966 GLU A 992 1 27 HELIX 15 15 PRO A 1017 LYS A 1020 1 4 HELIX 16 16 LEU A 1023 GLY A 1035 1 13 HELIX 17 17 VAL A 1057 LEU A 1068 1 12 HELIX 18 18 LYS A 1119 CYS A 1139 1 21 SHEET 1 A 2 LEU A1086 LEU A1088 0 SHEET 2 A 2 TYR A1112 GLU A1114 -1 O VAL A1113 N THR A1087 SHEET 1 B 2 LEU A1146 LYS A1149 0 SHEET 2 B 2 LYS A1152 SER A1155 -1 O LYS A1152 N LYS A1149 CISPEP 1 SER A 930 PRO A 931 0 -4.02 CISPEP 2 ASN A 1041 PRO A 1042 0 -0.09 SITE 1 AC1 3 ALA A 973 LEU A1047 VAL A1055 CRYST1 62.080 80.676 124.729 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016108 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012395 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008017 0.00000