HEADER CELL CYCLE 20-MAY-14 4UMN TITLE STRUCTURE OF A STAPLED PEPTIDE ANTAGONIST BOUND TO NUTLIN-RESISTANT TITLE 2 MDM2. COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE MDM2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P53 BINDING DOMAIN, RESIDUES 6-125; COMPND 5 SYNONYM: DOUBLE MINUTE 2 PROTEIN,HDM2,ONCOPROTEIN MDM2,RING-TYPE E3 COMPND 6 UBIQUITIN TRANSFERASE MDM2,P53-BINDING PROTEIN MDM2; COMPND 7 EC: 2.3.2.27; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: M06; COMPND 12 CHAIN: C, D; COMPND 13 FRAGMENT: MDM2 INTERACTING PEPTIDE, RESIDUES 17-27; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MDM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX-6-P-1; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-6-P-1(MDM2-6-125); SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR S.CHEE,J.WONGSANTICHON,S.QUAH,R.C.ROBINSON,C.VERMA,D.P.LANE, AUTHOR 2 C.J.BROWN,F.J.GHADESSY REVDAT 8 07-FEB-24 4UMN 1 REMARK REVDAT 7 15-NOV-23 4UMN 1 LINK ATOM REVDAT 6 15-MAR-23 4UMN 1 COMPND SOURCE DBREF SEQADV REVDAT 6 2 1 SEQRES HET HETNAM FORMUL REVDAT 6 3 1 LINK ATOM REVDAT 5 16-OCT-19 4UMN 1 REMARK LINK REVDAT 4 09-AUG-17 4UMN 1 JRNL REVDAT 3 27-AUG-14 4UMN 1 JRNL REVDAT 2 16-JUL-14 4UMN 1 REMARK ATOM ANISOU MASTER REVDAT 1 28-MAY-14 4UMN 0 JRNL AUTH S.M.CHEE,J.WONGSANTICHON,Q.SOO TNG,R.ROBINSON,T.L.JOSEPH, JRNL AUTH 2 C.VERMA,D.P.LANE,C.J.BROWN,F.J.GHADESSY JRNL TITL STRUCTURE OF A STAPLED PEPTIDE ANTAGONIST BOUND TO JRNL TITL 2 NUTLIN-RESISTANT MDM2. JRNL REF PLOS ONE V. 9 04914 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25115702 JRNL DOI 10.1371/JOURNAL.PONE.0104914 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 105.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 18187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1240 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.27000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.541 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1806 ; 0.005 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1802 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2428 ; 1.260 ; 2.020 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4136 ; 1.087 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 200 ; 5.398 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;39.762 ;23.506 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 324 ;12.648 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;13.024 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 273 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1910 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 413 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 838 ; 0.351 ; 1.668 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 832 ; 0.352 ; 1.669 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1023 ; 0.604 ; 2.507 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 968 ; 0.353 ; 1.708 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 48 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0400 23.7613 111.8238 REMARK 3 T TENSOR REMARK 3 T11: 0.3786 T22: 0.1143 REMARK 3 T33: 0.0667 T12: 0.0631 REMARK 3 T13: -0.0469 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 8.6295 L22: 9.2044 REMARK 3 L33: 3.9306 L12: 4.3580 REMARK 3 L13: -2.2466 L23: -0.6127 REMARK 3 S TENSOR REMARK 3 S11: 0.0522 S12: 0.1104 S13: 0.3432 REMARK 3 S21: -0.4770 S22: -0.2466 S23: -0.0645 REMARK 3 S31: -0.0740 S32: -0.1365 S33: 0.1944 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5175 14.9838 119.5812 REMARK 3 T TENSOR REMARK 3 T11: 0.1700 T22: 0.0251 REMARK 3 T33: 0.0511 T12: 0.0211 REMARK 3 T13: -0.0277 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.3830 L22: 4.6729 REMARK 3 L33: 4.2031 L12: -1.2857 REMARK 3 L13: 0.0787 L23: -1.7224 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: 0.0577 S13: -0.0980 REMARK 3 S21: -0.3774 S22: -0.1643 S23: -0.1949 REMARK 3 S31: 0.0753 S32: 0.1508 S33: 0.1135 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 110 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2586 22.7696 135.9720 REMARK 3 T TENSOR REMARK 3 T11: 0.1213 T22: 0.0688 REMARK 3 T33: 0.1187 T12: 0.0193 REMARK 3 T13: 0.0055 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 3.3358 L22: 5.1555 REMARK 3 L33: 1.9698 L12: -0.8123 REMARK 3 L13: 0.3453 L23: -0.3385 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: -0.3026 S13: -0.2515 REMARK 3 S21: 0.3811 S22: -0.0375 S23: 0.4489 REMARK 3 S31: -0.0523 S32: -0.0753 S33: 0.0434 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 17 C 28 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2586 22.7696 135.9720 REMARK 3 T TENSOR REMARK 3 T11: 0.3755 T22: 0.2462 REMARK 3 T33: 0.9410 T12: 0.2573 REMARK 3 T13: 0.3649 T23: 0.2217 REMARK 3 L TENSOR REMARK 3 L11: 10.5322 L22: 10.1356 REMARK 3 L33: 7.1114 L12: 2.8638 REMARK 3 L13: -5.8356 L23: -2.9138 REMARK 3 S TENSOR REMARK 3 S11: 0.5718 S12: 0.2761 S13: 1.4827 REMARK 3 S21: 1.5285 S22: 0.7795 S23: 2.7956 REMARK 3 S31: -0.9869 S32: -1.0337 S33: -1.3513 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 17 D 28 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2586 22.7696 135.9720 REMARK 3 T TENSOR REMARK 3 T11: 0.7138 T22: 0.0971 REMARK 3 T33: 0.2685 T12: 0.0558 REMARK 3 T13: 0.2160 T23: 0.1073 REMARK 3 L TENSOR REMARK 3 L11: 4.7983 L22: 8.1190 REMARK 3 L33: 11.3599 L12: -3.9963 REMARK 3 L13: -6.1581 L23: 9.1901 REMARK 3 S TENSOR REMARK 3 S11: -1.2606 S12: -0.3114 S13: -0.8161 REMARK 3 S21: 2.0931 S22: -0.0085 S23: 0.9134 REMARK 3 S31: 2.5098 S32: 0.2095 S33: 1.2691 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 4UMN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1290060697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19576 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2AXI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04 M CITRIC ACID, 0.06 M BIS-TRIS REMARK 280 PROPANE PH 6.4, AND 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.83700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.84150 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.83700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.84150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 6 REMARK 465 SER A 7 REMARK 465 VAL A 8 REMARK 465 PRO A 9 REMARK 465 THR A 10 REMARK 465 ASP A 11 REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 VAL A 14 REMARK 465 THR A 15 REMARK 465 THR A 16 REMARK 465 SER A 17 REMARK 465 GLN A 113 REMARK 465 GLU A 114 REMARK 465 SER A 115 REMARK 465 SER A 116 REMARK 465 ASP A 117 REMARK 465 SER A 118 REMARK 465 GLY A 119 REMARK 465 THR A 120 REMARK 465 SER A 121 REMARK 465 VAL A 122 REMARK 465 SER A 123 REMARK 465 GLU A 124 REMARK 465 ASN A 125 REMARK 465 MET B 6 REMARK 465 SER B 7 REMARK 465 VAL B 8 REMARK 465 PRO B 9 REMARK 465 THR B 10 REMARK 465 ASP B 11 REMARK 465 GLY B 12 REMARK 465 ALA B 13 REMARK 465 VAL B 14 REMARK 465 THR B 15 REMARK 465 THR B 16 REMARK 465 SER B 17 REMARK 465 ASN B 111 REMARK 465 GLN B 112 REMARK 465 GLN B 113 REMARK 465 GLU B 114 REMARK 465 SER B 115 REMARK 465 SER B 116 REMARK 465 ASP B 117 REMARK 465 SER B 118 REMARK 465 GLY B 119 REMARK 465 THR B 120 REMARK 465 SER B 121 REMARK 465 VAL B 122 REMARK 465 SER B 123 REMARK 465 GLU B 124 REMARK 465 ASN B 125 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 GLN B 18 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 26 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 LEU D 26 O - C - N ANGL. DEV. = -10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 77 15.95 -148.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 METHYLAMINE (NME): AMIDATION OF C-TERMINAL RESIDUE IN REMARK 600 CHAINS C AND D. DBREF 4UMN A 6 125 UNP Q00987 MDM2_HUMAN 6 125 DBREF 4UMN B 6 125 UNP Q00987 MDM2_HUMAN 6 125 DBREF 4UMN C 16 28 PDB 4UMN 4UMN 16 28 DBREF 4UMN D 16 28 PDB 4UMN 4UMN 16 28 SEQADV 4UMN ALA A 62 UNP Q00987 MET 62 CONFLICT SEQADV 4UMN ALA B 62 UNP Q00987 MET 62 CONFLICT SEQRES 1 A 120 MET SER VAL PRO THR ASP GLY ALA VAL THR THR SER GLN SEQRES 2 A 120 ILE PRO ALA SER GLU GLN GLU THR LEU VAL ARG PRO LYS SEQRES 3 A 120 PRO LEU LEU LEU LYS LEU LEU LYS SER VAL GLY ALA GLN SEQRES 4 A 120 LYS ASP THR TYR THR MET LYS GLU VAL LEU PHE TYR LEU SEQRES 5 A 120 GLY GLN TYR ILE ALA THR LYS ARG LEU TYR ASP GLU LYS SEQRES 6 A 120 GLN GLN HIS ILE VAL TYR CYS SER ASN ASP LEU LEU GLY SEQRES 7 A 120 ASP LEU PHE GLY VAL PRO SER PHE SER VAL LYS GLU HIS SEQRES 8 A 120 ARG LYS ILE TYR THR MET ILE TYR ARG ASN LEU VAL VAL SEQRES 9 A 120 VAL ASN GLN GLN GLU SER SER ASP SER GLY THR SER VAL SEQRES 10 A 120 SER GLU ASN SEQRES 1 B 120 MET SER VAL PRO THR ASP GLY ALA VAL THR THR SER GLN SEQRES 2 B 120 ILE PRO ALA SER GLU GLN GLU THR LEU VAL ARG PRO LYS SEQRES 3 B 120 PRO LEU LEU LEU LYS LEU LEU LYS SER VAL GLY ALA GLN SEQRES 4 B 120 LYS ASP THR TYR THR MET LYS GLU VAL LEU PHE TYR LEU SEQRES 5 B 120 GLY GLN TYR ILE ALA THR LYS ARG LEU TYR ASP GLU LYS SEQRES 6 B 120 GLN GLN HIS ILE VAL TYR CYS SER ASN ASP LEU LEU GLY SEQRES 7 B 120 ASP LEU PHE GLY VAL PRO SER PHE SER VAL LYS GLU HIS SEQRES 8 B 120 ARG LYS ILE TYR THR MET ILE TYR ARG ASN LEU VAL VAL SEQRES 9 B 120 VAL ASN GLN GLN GLU SER SER ASP SER GLY THR SER VAL SEQRES 10 B 120 SER GLU ASN SEQRES 1 C 13 ACE THR SER PHE 0EH GLU TYR TRP TYR LEU LEU MK8 NH2 SEQRES 1 D 13 ACE THR SER PHE 0EH GLU TYR TRP TYR LEU LEU MK8 NH2 MODRES 4UMN MK8 C 27 LEU 2-METHYL-L-NORLEUCINE MODRES 4UMN MK8 D 27 LEU 2-METHYL-L-NORLEUCINE HET ACE C 16 3 HET 0EH C 20 12 HET MK8 C 27 9 HET NH2 C 28 1 HET ACE D 16 3 HET 0EH D 20 12 HET MK8 D 27 9 HET NH2 D 28 1 HETNAM ACE ACETYL GROUP HETNAM 0EH (2R)-2-AMINO-2-METHYLNONANOIC ACID HETNAM MK8 2-METHYL-L-NORLEUCINE HETNAM NH2 AMINO GROUP FORMUL 3 ACE 2(C2 H4 O) FORMUL 3 0EH 2(C10 H21 N O2) FORMUL 3 MK8 2(C7 H15 N O2) FORMUL 3 NH2 2(H2 N) FORMUL 5 HOH *85(H2 O) HELIX 1 1 PRO A 20 GLU A 25 1 6 HELIX 2 2 LYS A 31 SER A 40 1 10 HELIX 3 3 MET A 50 LYS A 64 1 15 HELIX 4 4 ASP A 80 GLY A 87 1 8 HELIX 5 5 GLU A 95 ASN A 106 1 12 HELIX 6 6 PRO B 20 GLU B 25 1 6 HELIX 7 7 LYS B 31 VAL B 41 1 11 HELIX 8 8 MET B 50 LYS B 64 1 15 HELIX 9 9 ASP B 80 GLY B 87 1 8 HELIX 10 10 GLU B 95 ARG B 105 1 11 HELIX 11 11 GLU C 21 MK8 C 27 1 7 HELIX 12 12 GLU D 21 MK8 D 27 1 7 SHEET 1 AA 3 TYR A 48 THR A 49 0 SHEET 2 AA 3 LEU A 27 PRO A 30 -1 O VAL A 28 N TYR A 48 SHEET 3 AA 3 LEU A 107 VAL A 109 -1 O VAL A 108 N ARG A 29 SHEET 1 AB 2 ILE A 74 TYR A 76 0 SHEET 2 AB 2 SER A 90 SER A 92 -1 O PHE A 91 N VAL A 75 SHEET 1 BA 3 TYR B 48 THR B 49 0 SHEET 2 BA 3 LEU B 27 PRO B 30 -1 O VAL B 28 N TYR B 48 SHEET 3 BA 3 LEU B 107 VAL B 109 -1 O VAL B 108 N ARG B 29 SHEET 1 BB 2 ILE B 74 TYR B 76 0 SHEET 2 BB 2 SER B 90 SER B 92 -1 O PHE B 91 N VAL B 75 LINK C ACE C 16 N THR C 17 1555 1555 1.33 LINK C PHE C 19 N 0EH C 20 1555 1555 1.35 LINK C 0EH C 20 N GLU C 21 1555 1555 1.35 LINK CAT 0EH C 20 CE MK8 C 27 1555 1555 1.34 LINK C LEU C 26 N MK8 C 27 1555 1555 1.29 LINK C MK8 C 27 N NH2 C 28 1555 1555 1.42 LINK C ACE D 16 N THR D 17 1555 1555 1.33 LINK C PHE D 19 N 0EH D 20 1555 1555 1.35 LINK C 0EH D 20 N GLU D 21 1555 1555 1.35 LINK CAT 0EH D 20 CE MK8 D 27 1555 1555 1.34 LINK C LEU D 26 N MK8 D 27 1555 1555 1.29 LINK C MK8 D 27 N NH2 D 28 1555 1555 1.42 CRYST1 39.076 65.674 105.683 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025591 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009462 0.00000