HEADER TRANSFERASE 20-MAY-14 4UMR
TITLE STRUCTURE OF MELK IN COMPLEX WITH INHIBITORS
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MATERNAL EMBRYONIC LEUCINE ZIPPER KINASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: HMELK, PROTEIN KINASE EG3, PEG3 KINASE, PROTEIN KINASE PK38,
COMPND 5 HPK38, TYROSINE-PROTEIN KINASE MELK;
COMPND 6 EC: 2.7.11.1, 2.7.10.2;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 8 OTHER_DETAILS: IMAGE CLONE
KEYWDS TRANSFERASE, FRAGMENT BASED DRUG DESIGN
EXPDTA X-RAY DIFFRACTION
AUTHOR C.N.JOHNSON,V.BERDINI,L.BEKE,P.BONNET,D.BREHMER,J.E.COYLE,P.J.DAY,
AUTHOR 2 M.FREDERICKSON,E.J.E.FREYNE,R.A.H.J.GILISSEN,C.C.F.HAMLETT,S.HOWARD,
AUTHOR 3 L.MEERPOEL,R.MCMENAMIN,S.PATEL,D.C.REES,A.SHARFF,F.SOMMEN,T.WU,
AUTHOR 4 J.T.M.LINDERS
REVDAT 3 08-MAY-24 4UMR 1 REMARK
REVDAT 2 28-JAN-15 4UMR 1 JRNL
REVDAT 1 08-OCT-14 4UMR 0
JRNL AUTH C.N.JOHNSON,V.BERDINI,L.BEKE,P.BONNET,D.BREHMER,J.E.COYLE,
JRNL AUTH 2 P.J.DAY,M.FREDERICKSON,E.J.E.FREYNE,R.A.H.J.GILISSEN,
JRNL AUTH 3 C.C.F.HAMLETT,S.HOWARD,L.MEERPOEL,R.MCMENAMIN,S.PATEL,
JRNL AUTH 4 D.C.REES,A.SHARFF,F.SOMMEN,T.WU,J.T.M.LINDERS
JRNL TITL FRAGMENT-BASED DISCOVERY OF TYPE I INHIBITORS OF MATERNAL
JRNL TITL 2 EMBRYONIC LEUCINE ZIPPER KINASE
JRNL REF ACS MED.CHEM.LETT. V. 6 25 2015
JRNL REFN ISSN 1948-5875
JRNL PMID 25589925
JRNL DOI 10.1021/ML5001245
REMARK 2
REMARK 2 RESOLUTION. 3.00 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.11.5
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.82
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 3 NUMBER OF REFLECTIONS : 8230
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.169
REMARK 3 R VALUE (WORKING SET) : 0.166
REMARK 3 FREE R VALUE : 0.224
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860
REMARK 3 FREE R VALUE TEST SET COUNT : 400
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 5
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.35
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2301
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1952
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2195
REMARK 3 BIN R VALUE (WORKING SET) : 0.1902
REMARK 3 BIN FREE R VALUE : 0.3024
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.61
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 106
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2537
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 20
REMARK 3 SOLVENT ATOMS : 29
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 89.77
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.60
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 2.24540
REMARK 3 B22 (A**2) : 2.24540
REMARK 3 B33 (A**2) : -4.49090
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.533
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.370
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 2617 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 3541 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 924 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 61 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 382 ; 16.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 2617 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 329 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3045 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.009
REMARK 3 BOND ANGLES (DEGREES) : 1.10
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 6.07
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.84
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|6 - A|91 }
REMARK 3 ORIGIN FOR THE GROUP (A): 32.5096 22.6343 11.9826
REMARK 3 T TENSOR
REMARK 3 T11: -0.2122 T22: -0.2058
REMARK 3 T33: 0.0854 T12: -0.0124
REMARK 3 T13: 0.0668 T23: 0.1626
REMARK 3 L TENSOR
REMARK 3 L11: 4.8274 L22: 3.7586
REMARK 3 L33: 5.3566 L12: -1.7219
REMARK 3 L13: 2.2577 L23: -1.1518
REMARK 3 S TENSOR
REMARK 3 S11: -0.0621 S12: 0.2943 S13: 0.3142
REMARK 3 S21: -0.1844 S22: 0.3897 S23: 0.5442
REMARK 3 S31: -0.3775 S32: -0.4250 S33: -0.3276
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { A|92 - A|274 }
REMARK 3 ORIGIN FOR THE GROUP (A): 31.1896 12.3366 36.0541
REMARK 3 T TENSOR
REMARK 3 T11: -0.1343 T22: -0.1846
REMARK 3 T33: -0.0679 T12: 0.0298
REMARK 3 T13: 0.0130 T23: -0.0790
REMARK 3 L TENSOR
REMARK 3 L11: 3.7674 L22: 5.1210
REMARK 3 L33: 3.1072 L12: -0.3590
REMARK 3 L13: 0.0084 L23: 2.2867
REMARK 3 S TENSOR
REMARK 3 S11: -0.1231 S12: -0.2187 S13: 0.2339
REMARK 3 S21: 0.6450 S22: -0.1268 S23: 0.4781
REMARK 3 S31: 0.0819 S32: -0.5812 S33: 0.2499
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { A|275 - A|333 }
REMARK 3 ORIGIN FOR THE GROUP (A): 50.8383 19.6701 6.6255
REMARK 3 T TENSOR
REMARK 3 T11: -0.0583 T22: -0.1591
REMARK 3 T33: 0.0301 T12: -0.0467
REMARK 3 T13: -0.0190 T23: 0.0707
REMARK 3 L TENSOR
REMARK 3 L11: 7.5247 L22: 4.5651
REMARK 3 L33: 2.8063 L12: 0.7202
REMARK 3 L13: -3.9744 L23: 1.0630
REMARK 3 S TENSOR
REMARK 3 S11: -0.0558 S12: 0.1676 S13: 0.4172
REMARK 3 S21: -0.1716 S22: 0.0945 S23: -0.3454
REMARK 3 S31: 0.1175 S32: -0.0529 S33: -0.0387
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP..
REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY. U VALUES WITH TLS
REMARK 3 ADDED
REMARK 4
REMARK 4 4UMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAY-14.
REMARK 100 THE DEPOSITION ID IS D_1290060711.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 15-JUN-09
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : ID29
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.89
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8250
REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000
REMARK 200 RESOLUTION RANGE LOW (A) : 52.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.100
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 3.900
REMARK 200 R MERGE (I) : 0.08000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: NONE
REMARK 200
REMARK 200 REMARK: NONE
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 60.00
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+2/3
REMARK 290 6555 -X,-X+Y,-Z+1/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.88767
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.77533
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.77533
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.88767
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -19
REMARK 465 GLY A -18
REMARK 465 SER A -17
REMARK 465 SER A -16
REMARK 465 HIS A -15
REMARK 465 HIS A -14
REMARK 465 HIS A -13
REMARK 465 HIS A -12
REMARK 465 HIS A -11
REMARK 465 HIS A -10
REMARK 465 SER A -9
REMARK 465 SER A -8
REMARK 465 GLY A -7
REMARK 465 LEU A -6
REMARK 465 VAL A -5
REMARK 465 PRO A -4
REMARK 465 ARG A -3
REMARK 465 GLY A -2
REMARK 465 SER A -1
REMARK 465 HIS A 0
REMARK 465 MET A 1
REMARK 465 LYS A 2
REMARK 465 ASP A 3
REMARK 465 TYR A 4
REMARK 465 ASP A 5
REMARK 465 CYS A 154
REMARK 465 ALA A 155
REMARK 465 LYS A 156
REMARK 465 PRO A 157
REMARK 465 LYS A 158
REMARK 465 GLY A 159
REMARK 465 ASN A 160
REMARK 465 LYS A 161
REMARK 465 ASP A 162
REMARK 465 TYR A 163
REMARK 465 HIS A 164
REMARK 465 LEU A 165
REMARK 465 GLN A 166
REMARK 465 ALA A 167
REMARK 465 CYS A 168
REMARK 465 LEU A 334
REMARK 465 SER A 335
REMARK 465 SER A 336
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 7 -42.16 63.55
REMARK 500 LEU A 8 47.63 -72.33
REMARK 500 HIS A 14 -135.85 -112.30
REMARK 500 PHE A 22 -53.66 -151.75
REMARK 500 SER A 49 18.86 -69.07
REMARK 500 ASP A 50 29.56 -153.13
REMARK 500 ASP A 102 -60.05 67.56
REMARK 500 ASP A 132 82.01 -166.60
REMARK 500 ILE A 149 -168.16 -120.80
REMARK 500 ASP A 150 76.28 21.55
REMARK 500 LEU A 244 48.02 -107.41
REMARK 500 ASN A 268 49.63 -82.43
REMARK 500 ILE A 280 -94.89 5.15
REMARK 500 TRP A 308 72.83 35.90
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 LYS A 9 TYR A 10 147.98
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QBB A 1334
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4D2T RELATED DB: PDB
REMARK 900 STRUCTURE OF MELK IN COMPLEX WITH INHIBITORS
REMARK 900 RELATED ID: 4D2V RELATED DB: PDB
REMARK 900 STRUCTURE OF MELK IN COMPLEX WITH INHIBITORS
REMARK 900 RELATED ID: 4D2W RELATED DB: PDB
REMARK 900 STRUCTURE OF MELK IN COMPLEX WITH INHIBITORS
REMARK 900 RELATED ID: 4UMP RELATED DB: PDB
REMARK 900 STRUCTURE OF MELK IN COMPLEX WITH INHIBITORS
REMARK 900 RELATED ID: 4UMQ RELATED DB: PDB
REMARK 900 STRUCTURE OF MELK IN COMPLEX WITH INHIBITORS
REMARK 900 RELATED ID: 4UMT RELATED DB: PDB
REMARK 900 STRUCTURE OF MELK IN COMPLEX WITH INHIBITORS
REMARK 900 RELATED ID: 4UMU RELATED DB: PDB
REMARK 900 STRUCTURE OF MELK IN COMPLEX WITH INHIBITORS
DBREF 4UMR A 1 336 UNP Q14680 MELK_HUMAN 1 336
SEQADV 4UMR MET A -19 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR GLY A -18 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR SER A -17 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR SER A -16 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR HIS A -15 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR HIS A -14 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR HIS A -13 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR HIS A -12 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR HIS A -11 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR HIS A -10 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR SER A -9 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR SER A -8 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR GLY A -7 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR LEU A -6 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR VAL A -5 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR PRO A -4 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR ARG A -3 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR GLY A -2 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR SER A -1 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR HIS A 0 UNP Q14680 EXPRESSION TAG
SEQADV 4UMR ALA A 167 UNP Q14680 THR 167 ENGINEERED MUTATION
SEQADV 4UMR THR A 213 UNP Q14680 ASN 213 ENGINEERED MUTATION
SEQADV 4UMR ALA A 214 UNP Q14680 VAL 214 ENGINEERED MUTATION
SEQADV 4UMR ALA A 215 UNP Q14680 MET 215 ENGINEERED MUTATION
SEQADV 4UMR VAL A 218 UNP Q14680 TYR 218 ENGINEERED MUTATION
SEQADV 4UMR ALA A 219 UNP Q14680 LYS 219 ENGINEERED MUTATION
SEQRES 1 A 356 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 356 LEU VAL PRO ARG GLY SER HIS MET LYS ASP TYR ASP GLU
SEQRES 3 A 356 LEU LEU LYS TYR TYR GLU LEU HIS GLU THR ILE GLY THR
SEQRES 4 A 356 GLY GLY PHE ALA LYS VAL LYS LEU ALA CYS HIS ILE LEU
SEQRES 5 A 356 THR GLY GLU MET VAL ALA ILE LYS ILE MET ASP LYS ASN
SEQRES 6 A 356 THR LEU GLY SER ASP LEU PRO ARG ILE LYS THR GLU ILE
SEQRES 7 A 356 GLU ALA LEU LYS ASN LEU ARG HIS GLN HIS ILE CYS GLN
SEQRES 8 A 356 LEU TYR HIS VAL LEU GLU THR ALA ASN LYS ILE PHE MET
SEQRES 9 A 356 VAL LEU GLU TYR CYS PRO GLY GLY GLU LEU PHE ASP TYR
SEQRES 10 A 356 ILE ILE SER GLN ASP ARG LEU SER GLU GLU GLU THR ARG
SEQRES 11 A 356 VAL VAL PHE ARG GLN ILE VAL SER ALA VAL ALA TYR VAL
SEQRES 12 A 356 HIS SER GLN GLY TYR ALA HIS ARG ASP LEU LYS PRO GLU
SEQRES 13 A 356 ASN LEU LEU PHE ASP GLU TYR HIS LYS LEU LYS LEU ILE
SEQRES 14 A 356 ASP PHE GLY LEU CYS ALA LYS PRO LYS GLY ASN LYS ASP
SEQRES 15 A 356 TYR HIS LEU GLN ALA CYS CYS GLY SER LEU ALA TYR ALA
SEQRES 16 A 356 ALA PRO GLU LEU ILE GLN GLY LYS SER TYR LEU GLY SER
SEQRES 17 A 356 GLU ALA ASP VAL TRP SER MET GLY ILE LEU LEU TYR VAL
SEQRES 18 A 356 LEU MET CYS GLY PHE LEU PRO PHE ASP ASP ASP THR ALA
SEQRES 19 A 356 ALA ALA LEU VAL ALA LYS ILE MET ARG GLY LYS TYR ASP
SEQRES 20 A 356 VAL PRO LYS TRP LEU SER PRO SER SER ILE LEU LEU LEU
SEQRES 21 A 356 GLN GLN MET LEU GLN VAL ASP PRO LYS LYS ARG ILE SER
SEQRES 22 A 356 MET LYS ASN LEU LEU ASN HIS PRO TRP ILE MET GLN ASP
SEQRES 23 A 356 TYR ASN TYR PRO VAL GLU TRP GLN SER LYS ASN PRO PHE
SEQRES 24 A 356 ILE HIS LEU ASP ASP ASP CYS VAL THR GLU LEU SER VAL
SEQRES 25 A 356 HIS HIS ARG ASN ASN ARG GLN THR MET GLU ASP LEU ILE
SEQRES 26 A 356 SER LEU TRP GLN TYR ASP HIS LEU THR ALA THR TYR LEU
SEQRES 27 A 356 LEU LEU LEU ALA LYS LYS ALA ARG GLY LYS PRO VAL ARG
SEQRES 28 A 356 LEU ARG LEU SER SER
HET QBB A1334 20
HETNAM QBB 4-FLUORO-N-(1,2,3,4-TETRAHYDROISOQUINOLIN-7-YL)
HETNAM 2 QBB BENZAMIDE
FORMUL 2 QBB C16 H15 F N2 O
FORMUL 3 HOH *29(H2 O)
HELIX 1 1 LYS A 44 GLY A 48 1 5
HELIX 2 2 ASP A 50 LYS A 62 1 13
HELIX 3 3 LEU A 94 ASP A 102 1 9
HELIX 4 4 SER A 105 GLN A 126 1 22
HELIX 5 5 LYS A 134 GLU A 136 5 3
HELIX 6 6 ALA A 176 GLN A 181 1 6
HELIX 7 7 LEU A 186 GLY A 205 1 20
HELIX 8 8 THR A 213 GLY A 224 1 12
HELIX 9 9 SER A 233 LEU A 244 1 12
HELIX 10 10 SER A 253 ASN A 259 1 7
HELIX 11 11 ASP A 283 HIS A 294 1 12
HELIX 12 12 ASN A 297 LEU A 307 1 11
HELIX 13 13 ASP A 311 ARG A 326 1 16
SHEET 1 AA 5 TYR A 11 THR A 19 0
SHEET 2 AA 5 ALA A 23 HIS A 30 -1 O VAL A 25 N ILE A 17
SHEET 3 AA 5 MET A 36 ASP A 43 -1 O VAL A 37 N ALA A 28
SHEET 4 AA 5 LYS A 81 GLU A 87 -1 O ILE A 82 N MET A 42
SHEET 5 AA 5 LEU A 72 GLU A 77 -1 N TYR A 73 O VAL A 85
SHEET 1 AB 3 GLY A 92 GLU A 93 0
SHEET 2 AB 3 LEU A 138 PHE A 140 -1 O PHE A 140 N GLY A 92
SHEET 3 AB 3 LEU A 146 LEU A 148 -1 O LYS A 147 N LEU A 139
SITE 1 AC1 10 ILE A 17 VAL A 25 LEU A 27 ALA A 38
SITE 2 AC1 10 LYS A 40 GLU A 87 TYR A 88 CYS A 89
SITE 3 AC1 10 LEU A 139 ILE A 149
CRYST1 102.664 102.664 65.663 90.00 90.00 120.00 P 31 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009741 0.005624 0.000000 0.00000
SCALE2 0.000000 0.011247 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015229 0.00000