HEADER TRANSFERASE 21-MAY-14 4UMT
TITLE STRUCTURE OF MELK IN COMPLEX WITH INHIBITORS
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MATERNAL EMBRYONIC LEUCINE ZIPPER KINASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: HMELK, PROTEIN KINASE EG3, PEG3 KINASE, PROTEIN KINASE PK38,
COMPND 5 HPK38, TYROSINE-PROTEIN KINASE MELK;
COMPND 6 EC: 2.7.11.1, 2.7.10.2;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 8 OTHER_DETAILS: IMAGE CLONE
KEYWDS TRANSFERASE, FRAGMENT BASED DRUG DESIGN
EXPDTA X-RAY DIFFRACTION
AUTHOR C.N.JOHNSON,V.BERDINI,L.BEKE,P.BONNET,D.BREHMER,J.E.COYLE,P.J.DAY,
AUTHOR 2 M.FREDERICKSON,E.J.E.FREYNE,R.A.H.J.GILISSEN,C.C.F.HAMLETT,S.HOWARD,
AUTHOR 3 L.MEERPOEL,R.MCMENAMIN,S.PATEL,D.C.REES,A.SHARFF,F.SOMMEN,T.WU,
AUTHOR 4 J.T.M.LINDERS
REVDAT 3 08-MAY-24 4UMT 1 REMARK
REVDAT 2 28-JAN-15 4UMT 1 JRNL
REVDAT 1 22-OCT-14 4UMT 0
JRNL AUTH C.N.JOHNSON,C.ADELINET,V.BERDINI,L.BEKE,P.BONNET,D.BREHMER,
JRNL AUTH 2 F.CALO,J.E.COYLE,P.J.DAY,M.FREDERICKSON,E.J.E.FREYNE,
JRNL AUTH 3 R.A.H.J.GILISSEN,C.C.F.HAMLETT,S.HOWARD,L.MEERPOEL,
JRNL AUTH 4 L.MEVELLEC,R.MCMENAMIN,E.PASQUIER,S.PATEL,D.C.REES,
JRNL AUTH 5 J.T.M.LINDERS
JRNL TITL STRUCTURE-BASED DESIGN OF TYPE II INHIBITORS APPLIED TO
JRNL TITL 2 MATERNAL EMBRYONIC LEUCINE ZIPPER KINASE.
JRNL REF ACS MED.CHEM.LETT. V. 6 31 2015
JRNL REFN ISSN 1948-5875
JRNL PMID 25589926
JRNL DOI 10.1021/ML5001273
REMARK 2
REMARK 2 RESOLUTION. 1.98 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0064
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 89.44
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1
REMARK 3 NUMBER OF REFLECTIONS : 26683
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.214
REMARK 3 R VALUE (WORKING SET) : 0.213
REMARK 3 FREE R VALUE : 0.236
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900
REMARK 3 FREE R VALUE TEST SET COUNT : 1388
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1942
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.94
REMARK 3 BIN R VALUE (WORKING SET) : 0.3030
REMARK 3 BIN FREE R VALUE SET COUNT : 112
REMARK 3 BIN FREE R VALUE : 0.3390
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2565
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 33
REMARK 3 SOLVENT ATOMS : 198
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.20
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.00000
REMARK 3 B22 (A**2) : 0.00000
REMARK 3 B33 (A**2) : 0.00000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.182
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2659 ; 0.011 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 2577 ; 0.000 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3596 ; 1.364 ; 1.963
REMARK 3 BOND ANGLES OTHERS (DEGREES): 5932 ; 3.568 ; 2.980
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 5.508 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;36.694 ;23.918
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 485 ;16.841 ;15.031
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;20.052 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.082 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2922 ; 0.002 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 604 ; 0.003 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1262 ; 2.001 ;10.985
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1261 ; 1.995 ;10.981
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1397 ; 2.422 ;11.167
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1398 ; 2.422 ;11.165
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 935 ; 5.176 ;23.938
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 926 ; 5.200 ;23.990
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : BABINET MODEL WITH MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY.
REMARK 4
REMARK 4 4UMT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-14.
REMARK 100 THE DEPOSITION ID IS D_1290060712.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 16-JUN-10
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : ID29
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28321
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980
REMARK 200 RESOLUTION RANGE LOW (A) : 89.990
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1
REMARK 200 DATA REDUNDANCY : 3.500
REMARK 200 R MERGE (I) : 0.04000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: NONE
REMARK 200
REMARK 200 REMARK: NONE
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 60.00
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+2/3
REMARK 290 6555 -X,-X+Y,-Z+1/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.62900
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.25800
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.25800
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.62900
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -19
REMARK 465 GLY A -18
REMARK 465 SER A -17
REMARK 465 SER A -16
REMARK 465 HIS A -15
REMARK 465 HIS A -14
REMARK 465 HIS A -13
REMARK 465 HIS A -12
REMARK 465 HIS A -11
REMARK 465 HIS A -10
REMARK 465 SER A -9
REMARK 465 SER A -8
REMARK 465 GLY A -7
REMARK 465 LEU A -6
REMARK 465 VAL A -5
REMARK 465 PRO A -4
REMARK 465 ARG A -3
REMARK 465 GLY A -2
REMARK 465 SER A -1
REMARK 465 HIS A 0
REMARK 465 MET A 1
REMARK 465 LYS A 2
REMARK 465 CYS A 154
REMARK 465 ALA A 155
REMARK 465 LYS A 156
REMARK 465 PRO A 157
REMARK 465 LYS A 158
REMARK 465 GLY A 159
REMARK 465 ASN A 160
REMARK 465 LYS A 161
REMARK 465 ASP A 162
REMARK 465 TYR A 163
REMARK 465 HIS A 164
REMARK 465 LEU A 165
REMARK 465 GLN A 166
REMARK 465 THR A 167
REMARK 465 CYS A 168
REMARK 465 LEU A 334
REMARK 465 SER A 335
REMARK 465 SER A 336
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 LEU A 217 C VAL A 218 N -0.177
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 251 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES
REMARK 500 ARG A 251 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 HIS A 14 -159.17 -110.76
REMARK 500 THR A 78 -168.74 -129.68
REMARK 500 ASP A 102 -69.87 79.97
REMARK 500 ARG A 131 -2.05 79.99
REMARK 500 ASP A 132 48.33 -142.55
REMARK 500 LEU A 244 54.55 -103.86
REMARK 500 ILE A 280 -88.24 -104.04
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1334
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 47W A 1335
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4UMP RELATED DB: PDB
REMARK 900 STRUCTURE OF MELK IN COMPLEX WITH INHIBITORS
REMARK 900 RELATED ID: 4UMQ RELATED DB: PDB
REMARK 900 STRUCTURE OF MELK IN COMPLEX WITH INHIBITORS
REMARK 900 RELATED ID: 4UMR RELATED DB: PDB
REMARK 900 STRUCTURE OF MELK IN COMPLEX WITH INHIBITORS
REMARK 900 RELATED ID: 4UMU RELATED DB: PDB
REMARK 900 STRUCTURE OF MELK IN COMPLEX WITH INHIBITORS
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 POINT MUTATIONS AND HIS TAG ARE PRESENT
DBREF 4UMT A 1 336 UNP Q14680 MELK_HUMAN 1 336
SEQADV 4UMT MET A -19 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT GLY A -18 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT SER A -17 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT SER A -16 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT HIS A -15 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT HIS A -14 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT HIS A -13 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT HIS A -12 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT HIS A -11 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT HIS A -10 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT SER A -9 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT SER A -8 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT GLY A -7 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT LEU A -6 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT VAL A -5 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT PRO A -4 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT ARG A -3 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT GLY A -2 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT SER A -1 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT HIS A 0 UNP Q14680 EXPRESSION TAG
SEQADV 4UMT THR A 213 UNP Q14680 ASN 213 ENGINEERED MUTATION
SEQADV 4UMT ALA A 214 UNP Q14680 VAL 214 ENGINEERED MUTATION
SEQADV 4UMT ALA A 215 UNP Q14680 MET 215 ENGINEERED MUTATION
SEQADV 4UMT VAL A 218 UNP Q14680 TYR 218 ENGINEERED MUTATION
SEQADV 4UMT ALA A 219 UNP Q14680 LYS 219 ENGINEERED MUTATION
SEQRES 1 A 356 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 356 LEU VAL PRO ARG GLY SER HIS MET LYS ASP TYR ASP GLU
SEQRES 3 A 356 LEU LEU LYS TYR TYR GLU LEU HIS GLU THR ILE GLY THR
SEQRES 4 A 356 GLY GLY PHE ALA LYS VAL LYS LEU ALA CYS HIS ILE LEU
SEQRES 5 A 356 THR GLY GLU MET VAL ALA ILE LYS ILE MET ASP LYS ASN
SEQRES 6 A 356 THR LEU GLY SER ASP LEU PRO ARG ILE LYS THR GLU ILE
SEQRES 7 A 356 GLU ALA LEU LYS ASN LEU ARG HIS GLN HIS ILE CYS GLN
SEQRES 8 A 356 LEU TYR HIS VAL LEU GLU THR ALA ASN LYS ILE PHE MET
SEQRES 9 A 356 VAL LEU GLU TYR CYS PRO GLY GLY GLU LEU PHE ASP TYR
SEQRES 10 A 356 ILE ILE SER GLN ASP ARG LEU SER GLU GLU GLU THR ARG
SEQRES 11 A 356 VAL VAL PHE ARG GLN ILE VAL SER ALA VAL ALA TYR VAL
SEQRES 12 A 356 HIS SER GLN GLY TYR ALA HIS ARG ASP LEU LYS PRO GLU
SEQRES 13 A 356 ASN LEU LEU PHE ASP GLU TYR HIS LYS LEU LYS LEU ILE
SEQRES 14 A 356 ASP PHE GLY LEU CYS ALA LYS PRO LYS GLY ASN LYS ASP
SEQRES 15 A 356 TYR HIS LEU GLN THR CYS CYS GLY SER LEU ALA TYR ALA
SEQRES 16 A 356 ALA PRO GLU LEU ILE GLN GLY LYS SER TYR LEU GLY SER
SEQRES 17 A 356 GLU ALA ASP VAL TRP SER MET GLY ILE LEU LEU TYR VAL
SEQRES 18 A 356 LEU MET CYS GLY PHE LEU PRO PHE ASP ASP ASP THR ALA
SEQRES 19 A 356 ALA ALA LEU VAL ALA LYS ILE MET ARG GLY LYS TYR ASP
SEQRES 20 A 356 VAL PRO LYS TRP LEU SER PRO SER SER ILE LEU LEU LEU
SEQRES 21 A 356 GLN GLN MET LEU GLN VAL ASP PRO LYS LYS ARG ILE SER
SEQRES 22 A 356 MET LYS ASN LEU LEU ASN HIS PRO TRP ILE MET GLN ASP
SEQRES 23 A 356 TYR ASN TYR PRO VAL GLU TRP GLN SER LYS ASN PRO PHE
SEQRES 24 A 356 ILE HIS LEU ASP ASP ASP CYS VAL THR GLU LEU SER VAL
SEQRES 25 A 356 HIS HIS ARG ASN ASN ARG GLN THR MET GLU ASP LEU ILE
SEQRES 26 A 356 SER LEU TRP GLN TYR ASP HIS LEU THR ALA THR TYR LEU
SEQRES 27 A 356 LEU LEU LEU ALA LYS LYS ALA ARG GLY LYS PRO VAL ARG
SEQRES 28 A 356 LEU ARG LEU SER SER
HET DMS A1334 4
HET 47W A1335 56
HETNAM DMS DIMETHYL SULFOXIDE
HETNAM 47W 1-(4-{[3-(ISOQUINOLIN-7-YL)PROP-2-YN-1-YL]OXY}-2-
HETNAM 2 47W METHOXYBENZYL)PIPERAZINEDIIUM
FORMUL 2 DMS C2 H6 O S
FORMUL 3 47W C24 H27 N3 O2 2+
FORMUL 4 HOH *198(H2 O)
HELIX 1 1 GLU A 6 TYR A 10 1 5
HELIX 2 2 LYS A 44 GLY A 48 1 5
HELIX 3 3 ASP A 50 ASN A 63 1 14
HELIX 4 4 LEU A 94 ASP A 102 1 9
HELIX 5 5 SER A 105 GLN A 126 1 22
HELIX 6 6 LYS A 134 GLU A 136 5 3
HELIX 7 7 CYS A 169 ALA A 175 5 7
HELIX 8 8 ALA A 176 GLN A 181 1 6
HELIX 9 9 LEU A 186 GLY A 205 1 20
HELIX 10 10 THR A 213 GLY A 224 1 12
HELIX 11 11 SER A 233 LEU A 244 1 12
HELIX 12 12 ASP A 247 ARG A 251 5 5
HELIX 13 13 SER A 253 ASN A 259 1 7
HELIX 14 14 ASP A 283 ARG A 295 1 13
HELIX 15 15 ASN A 297 SER A 306 1 10
HELIX 16 16 ASP A 311 ARG A 326 1 16
SHEET 1 AA 5 TYR A 11 GLY A 18 0
SHEET 2 AA 5 ALA A 23 HIS A 30 -1 O VAL A 25 N ILE A 17
SHEET 3 AA 5 GLU A 35 ASP A 43 -1 O GLU A 35 N HIS A 30
SHEET 4 AA 5 LYS A 81 GLU A 87 -1 O ILE A 82 N MET A 42
SHEET 5 AA 5 LEU A 72 GLU A 77 -1 N TYR A 73 O VAL A 85
SHEET 1 AB 3 GLY A 92 GLU A 93 0
SHEET 2 AB 3 LEU A 138 PHE A 140 -1 N PHE A 140 O GLY A 92
SHEET 3 AB 3 LEU A 146 LEU A 148 -1 O LYS A 147 N LEU A 139
SITE 1 AC1 6 GLU A 35 MET A 36 TYR A 73 ALA A 322
SITE 2 AC1 6 ARG A 326 HOH A2015
SITE 1 AC2 13 ALA A 38 GLU A 57 ALA A 60 ILE A 69
SITE 2 AC2 13 GLU A 87 CYS A 89 ALA A 129 HIS A 130
SITE 3 AC2 13 LEU A 139 ILE A 149 ASP A 150 HOH A2027
SITE 4 AC2 13 HOH A2198
CRYST1 103.274 103.274 64.887 90.00 90.00 120.00 P 31 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009683 0.005590 0.000000 0.00000
SCALE2 0.000000 0.011181 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015411 0.00000