HEADER OXIDOREDUCTASE 22-MAY-14 4UMY TITLE IDH1 R132H IN COMPLEX WITH CPD 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IDH, CYTOSOLIC NADP-ISOCITRATE DEHYDROGENASE, IDP, NADP(+)- COMPND 5 SPECIFIC ICDH, OXALOSUCCINATE DECARBOXYLASE, IDH1-R132H; COMPND 6 EC: 1.1.1.42; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS OXIDOREDUCTASE, ISOCITRATE DEHYDROGENASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR L.MCLEAN,Y.ZHANG,M.MATHIEU REVDAT 5 10-JAN-24 4UMY 1 REMARK REVDAT 4 29-MAR-17 4UMY 1 REMARK REVDAT 3 21-JAN-15 4UMY 1 JRNL REVDAT 2 26-NOV-14 4UMY 1 JRNL REVDAT 1 19-NOV-14 4UMY 0 JRNL AUTH G.DENG,J.SHEN,M.YIN,J.MCMANUS,M.MATHIEU,P.GEE,T.HE,C.SHI, JRNL AUTH 2 O.BEDEL,L.R.MCLEAN,F.LE-STRAT,Y.ZHANG,J.MARQUETTE,Q.GAO, JRNL AUTH 3 B.ZHANG,A.RAK,D.HOFFMANN,E.ROONEY,A.VASSORT,W.ENGLARO,Y.LI, JRNL AUTH 4 V.PATEL,F.ADRIAN,S.GROSS,D.WIEDERSCHAIN,H.CHENG,S.LICHT JRNL TITL SELECTIVE INHIBITION OF MUTANT ISOCITRATE DEHYDROGENASE 1 JRNL TITL 2 (IDH1) VIA DISRUPTION OF A METAL BINDING NETWORK BY AN JRNL TITL 3 ALLOSTERIC SMALL MOLECULE. JRNL REF J.BIOL.CHEM. V. 290 762 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 25391653 JRNL DOI 10.1074/JBC.M114.608497 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 64186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3248 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.12 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.16 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4405 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2352 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4212 REMARK 3 BIN R VALUE (WORKING SET) : 0.2343 REMARK 3 BIN FREE R VALUE : 0.2568 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.38 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 193 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6130 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 122 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.82020 REMARK 3 B22 (A**2) : 3.82020 REMARK 3 B33 (A**2) : -7.64050 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.264 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.177 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.149 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.172 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.148 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6379 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8612 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2276 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 161 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 937 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6379 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 837 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7357 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.33 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.52 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1290060721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64610 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 99.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNX REMARK 200 STARTING MODEL: PDB ENTRY 1T09 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 5000 MME 22% - BIS-TRIS 100MM PH REMARK 280 6.5 - AMMONIUM SULFATE 220 MM, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 150.18500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.34000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.34000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 225.27750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.34000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.34000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.09250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.34000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.34000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 225.27750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.34000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.34000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.09250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 150.18500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 134 REMARK 465 TYR A 135 REMARK 465 GLY A 136 REMARK 465 ASP A 137 REMARK 465 GLN A 138 REMARK 465 TYR A 139 REMARK 465 TYR A 272 REMARK 465 ASP A 273 REMARK 465 GLY A 274 REMARK 465 ASP A 275 REMARK 465 VAL A 276 REMARK 465 GLN A 277 REMARK 465 SER A 278 REMARK 465 ASP A 279 REMARK 465 SER A 280 REMARK 465 VAL A 281 REMARK 465 ALA A 282 REMARK 465 GLN A 283 REMARK 465 GLY A 284 REMARK 465 TYR A 285 REMARK 465 LEU A 414 REMARK 465 SER A 415 REMARK 465 LEU A 416 REMARK 465 GLU A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 TYR B 135 REMARK 465 GLY B 136 REMARK 465 ASP B 137 REMARK 465 GLN B 138 REMARK 465 TYR B 139 REMARK 465 LYS B 236 REMARK 465 SER B 237 REMARK 465 GLN B 238 REMARK 465 PHE B 239 REMARK 465 GLU B 240 REMARK 465 ALA B 241 REMARK 465 GLN B 242 REMARK 465 LYS B 243 REMARK 465 ILE B 244 REMARK 465 TYR B 272 REMARK 465 ASP B 273 REMARK 465 GLY B 274 REMARK 465 ASP B 275 REMARK 465 VAL B 276 REMARK 465 GLN B 277 REMARK 465 SER B 278 REMARK 465 ASP B 279 REMARK 465 SER B 280 REMARK 465 VAL B 281 REMARK 465 ALA B 282 REMARK 465 GLN B 283 REMARK 465 GLY B 284 REMARK 465 TYR B 285 REMARK 465 GLY B 286 REMARK 465 LEU B 414 REMARK 465 SER B 415 REMARK 465 LEU B 416 REMARK 465 GLU B 417 REMARK 465 HIS B 418 REMARK 465 HIS B 419 REMARK 465 HIS B 420 REMARK 465 HIS B 421 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 465 HIS B 425 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 17 -128.43 48.58 REMARK 500 ILE A 31 -62.87 -96.34 REMARK 500 ASN A 68 -13.04 71.29 REMARK 500 HIS A 170 143.15 -171.18 REMARK 500 GLU B 17 -129.16 48.85 REMARK 500 ILE B 31 -62.39 -96.75 REMARK 500 ASN B 68 -13.44 71.74 REMARK 500 HIS B 170 143.40 -171.71 REMARK 500 LEU B 201 -55.88 70.44 REMARK 500 ASN B 213 -36.03 57.66 REMARK 500 ILE B 215 -64.79 -94.27 REMARK 500 LYS B 260 -160.15 -103.52 REMARK 500 SER B 261 158.10 60.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2002 DISTANCE = 5.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 1417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 1416 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UMX RELATED DB: PDB REMARK 900 IDH1 R132H IN COMPLEX WITH CPD 1 DBREF 4UMY A 1 414 UNP O75874 IDHC_HUMAN 1 414 DBREF 4UMY B 1 414 UNP O75874 IDHC_HUMAN 1 414 SEQADV 4UMY SER A 415 UNP O75874 EXPRESSION TAG SEQADV 4UMY LEU A 416 UNP O75874 EXPRESSION TAG SEQADV 4UMY GLU A 417 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS A 418 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS A 419 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS A 420 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS A 421 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS A 422 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS A 423 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS A 424 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS A 425 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS A 132 UNP O75874 ARG 132 ENGINEERED MUTATION SEQADV 4UMY SER B 415 UNP O75874 EXPRESSION TAG SEQADV 4UMY LEU B 416 UNP O75874 EXPRESSION TAG SEQADV 4UMY GLU B 417 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS B 418 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS B 419 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS B 420 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS B 421 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS B 422 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS B 423 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS B 424 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS B 425 UNP O75874 EXPRESSION TAG SEQADV 4UMY HIS B 132 UNP O75874 ARG 132 ENGINEERED MUTATION SEQRES 1 A 425 MET SER LYS LYS ILE SER GLY GLY SER VAL VAL GLU MET SEQRES 2 A 425 GLN GLY ASP GLU MET THR ARG ILE ILE TRP GLU LEU ILE SEQRES 3 A 425 LYS GLU LYS LEU ILE PHE PRO TYR VAL GLU LEU ASP LEU SEQRES 4 A 425 HIS SER TYR ASP LEU GLY ILE GLU ASN ARG ASP ALA THR SEQRES 5 A 425 ASN ASP GLN VAL THR LYS ASP ALA ALA GLU ALA ILE LYS SEQRES 6 A 425 LYS HIS ASN VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 A 425 ASP GLU LYS ARG VAL GLU GLU PHE LYS LEU LYS GLN MET SEQRES 8 A 425 TRP LYS SER PRO ASN GLY THR ILE ARG ASN ILE LEU GLY SEQRES 9 A 425 GLY THR VAL PHE ARG GLU ALA ILE ILE CYS LYS ASN ILE SEQRES 10 A 425 PRO ARG LEU VAL SER GLY TRP VAL LYS PRO ILE ILE ILE SEQRES 11 A 425 GLY HIS HIS ALA TYR GLY ASP GLN TYR ARG ALA THR ASP SEQRES 12 A 425 PHE VAL VAL PRO GLY PRO GLY LYS VAL GLU ILE THR TYR SEQRES 13 A 425 THR PRO SER ASP GLY THR GLN LYS VAL THR TYR LEU VAL SEQRES 14 A 425 HIS ASN PHE GLU GLU GLY GLY GLY VAL ALA MET GLY MET SEQRES 15 A 425 TYR ASN GLN ASP LYS SER ILE GLU ASP PHE ALA HIS SER SEQRES 16 A 425 SER PHE GLN MET ALA LEU SER LYS GLY TRP PRO LEU TYR SEQRES 17 A 425 LEU SER THR LYS ASN THR ILE LEU LYS LYS TYR ASP GLY SEQRES 18 A 425 ARG PHE LYS ASP ILE PHE GLN GLU ILE TYR ASP LYS GLN SEQRES 19 A 425 TYR LYS SER GLN PHE GLU ALA GLN LYS ILE TRP TYR GLU SEQRES 20 A 425 HIS ARG LEU ILE ASP ASP MET VAL ALA GLN ALA MET LYS SEQRES 21 A 425 SER GLU GLY GLY PHE ILE TRP ALA CYS LYS ASN TYR ASP SEQRES 22 A 425 GLY ASP VAL GLN SER ASP SER VAL ALA GLN GLY TYR GLY SEQRES 23 A 425 SER LEU GLY MET MET THR SER VAL LEU VAL CYS PRO ASP SEQRES 24 A 425 GLY LYS THR VAL GLU ALA GLU ALA ALA HIS GLY THR VAL SEQRES 25 A 425 THR ARG HIS TYR ARG MET TYR GLN LYS GLY GLN GLU THR SEQRES 26 A 425 SER THR ASN PRO ILE ALA SER ILE PHE ALA TRP THR ARG SEQRES 27 A 425 GLY LEU ALA HIS ARG ALA LYS LEU ASP ASN ASN LYS GLU SEQRES 28 A 425 LEU ALA PHE PHE ALA ASN ALA LEU GLU GLU VAL SER ILE SEQRES 29 A 425 GLU THR ILE GLU ALA GLY PHE MET THR LYS ASP LEU ALA SEQRES 30 A 425 ALA CYS ILE LYS GLY LEU PRO ASN VAL GLN ARG SER ASP SEQRES 31 A 425 TYR LEU ASN THR PHE GLU PHE MET ASP LYS LEU GLY GLU SEQRES 32 A 425 ASN LEU LYS ILE LYS LEU ALA GLN ALA LYS LEU SER LEU SEQRES 33 A 425 GLU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 425 MET SER LYS LYS ILE SER GLY GLY SER VAL VAL GLU MET SEQRES 2 B 425 GLN GLY ASP GLU MET THR ARG ILE ILE TRP GLU LEU ILE SEQRES 3 B 425 LYS GLU LYS LEU ILE PHE PRO TYR VAL GLU LEU ASP LEU SEQRES 4 B 425 HIS SER TYR ASP LEU GLY ILE GLU ASN ARG ASP ALA THR SEQRES 5 B 425 ASN ASP GLN VAL THR LYS ASP ALA ALA GLU ALA ILE LYS SEQRES 6 B 425 LYS HIS ASN VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 B 425 ASP GLU LYS ARG VAL GLU GLU PHE LYS LEU LYS GLN MET SEQRES 8 B 425 TRP LYS SER PRO ASN GLY THR ILE ARG ASN ILE LEU GLY SEQRES 9 B 425 GLY THR VAL PHE ARG GLU ALA ILE ILE CYS LYS ASN ILE SEQRES 10 B 425 PRO ARG LEU VAL SER GLY TRP VAL LYS PRO ILE ILE ILE SEQRES 11 B 425 GLY HIS HIS ALA TYR GLY ASP GLN TYR ARG ALA THR ASP SEQRES 12 B 425 PHE VAL VAL PRO GLY PRO GLY LYS VAL GLU ILE THR TYR SEQRES 13 B 425 THR PRO SER ASP GLY THR GLN LYS VAL THR TYR LEU VAL SEQRES 14 B 425 HIS ASN PHE GLU GLU GLY GLY GLY VAL ALA MET GLY MET SEQRES 15 B 425 TYR ASN GLN ASP LYS SER ILE GLU ASP PHE ALA HIS SER SEQRES 16 B 425 SER PHE GLN MET ALA LEU SER LYS GLY TRP PRO LEU TYR SEQRES 17 B 425 LEU SER THR LYS ASN THR ILE LEU LYS LYS TYR ASP GLY SEQRES 18 B 425 ARG PHE LYS ASP ILE PHE GLN GLU ILE TYR ASP LYS GLN SEQRES 19 B 425 TYR LYS SER GLN PHE GLU ALA GLN LYS ILE TRP TYR GLU SEQRES 20 B 425 HIS ARG LEU ILE ASP ASP MET VAL ALA GLN ALA MET LYS SEQRES 21 B 425 SER GLU GLY GLY PHE ILE TRP ALA CYS LYS ASN TYR ASP SEQRES 22 B 425 GLY ASP VAL GLN SER ASP SER VAL ALA GLN GLY TYR GLY SEQRES 23 B 425 SER LEU GLY MET MET THR SER VAL LEU VAL CYS PRO ASP SEQRES 24 B 425 GLY LYS THR VAL GLU ALA GLU ALA ALA HIS GLY THR VAL SEQRES 25 B 425 THR ARG HIS TYR ARG MET TYR GLN LYS GLY GLN GLU THR SEQRES 26 B 425 SER THR ASN PRO ILE ALA SER ILE PHE ALA TRP THR ARG SEQRES 27 B 425 GLY LEU ALA HIS ARG ALA LYS LEU ASP ASN ASN LYS GLU SEQRES 28 B 425 LEU ALA PHE PHE ALA ASN ALA LEU GLU GLU VAL SER ILE SEQRES 29 B 425 GLU THR ILE GLU ALA GLY PHE MET THR LYS ASP LEU ALA SEQRES 30 B 425 ALA CYS ILE LYS GLY LEU PRO ASN VAL GLN ARG SER ASP SEQRES 31 B 425 TYR LEU ASN THR PHE GLU PHE MET ASP LYS LEU GLY GLU SEQRES 32 B 425 ASN LEU LYS ILE LYS LEU ALA GLN ALA LYS LEU SER LEU SEQRES 33 B 425 GLU HIS HIS HIS HIS HIS HIS HIS HIS HET SO4 A1414 5 HET SO4 A1415 5 HET GOL A1416 6 HET NAP A1417 48 HET SO4 B1414 5 HET SO4 B1415 5 HET NAP B1416 48 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 GOL C3 H8 O3 FORMUL 6 NAP 2(C21 H28 N7 O17 P3) FORMUL 10 HOH *286(H2 O) HELIX 1 1 ASP A 16 LEU A 30 1 15 HELIX 2 2 GLY A 45 THR A 52 1 8 HELIX 3 3 ASP A 54 ASN A 68 1 15 HELIX 4 4 ASP A 79 LYS A 87 1 9 HELIX 5 5 SER A 94 GLY A 104 1 11 HELIX 6 6 ASP A 186 GLY A 204 1 19 HELIX 7 7 LYS A 218 TYR A 235 1 18 HELIX 8 8 TYR A 235 GLN A 242 1 8 HELIX 9 9 ILE A 251 SER A 261 1 11 HELIX 10 10 SER A 287 GLY A 289 5 3 HELIX 11 11 VAL A 312 LYS A 321 1 10 HELIX 12 12 PRO A 329 ASN A 348 1 20 HELIX 13 13 ASN A 349 ALA A 369 1 21 HELIX 14 14 THR A 373 GLY A 382 1 10 HELIX 15 15 LEU A 383 VAL A 386 5 4 HELIX 16 16 GLN A 387 TYR A 391 5 5 HELIX 17 17 ASN A 393 ALA A 412 1 20 HELIX 18 18 ASP B 16 LEU B 30 1 15 HELIX 19 19 GLY B 45 THR B 52 1 8 HELIX 20 20 ASP B 54 ASN B 68 1 15 HELIX 21 21 ASP B 79 LYS B 87 1 9 HELIX 22 22 SER B 94 GLY B 104 1 11 HELIX 23 23 ASP B 186 ALA B 200 1 15 HELIX 24 24 LYS B 218 GLN B 234 1 17 HELIX 25 25 ILE B 251 LYS B 260 1 10 HELIX 26 26 SER B 287 GLY B 289 5 3 HELIX 27 27 VAL B 312 LYS B 321 1 10 HELIX 28 28 PRO B 329 ASN B 348 1 20 HELIX 29 29 ASN B 349 ALA B 369 1 21 HELIX 30 30 THR B 373 GLY B 382 1 10 HELIX 31 31 LEU B 383 VAL B 386 5 4 HELIX 32 32 GLN B 387 TYR B 391 5 5 HELIX 33 33 ASN B 393 LYS B 413 1 21 SHEET 1 AA10 VAL A 35 ASP A 43 0 SHEET 2 AA10 ILE A 5 GLN A 14 1 O ILE A 5 N GLU A 36 SHEET 3 AA10 VAL A 69 LYS A 72 1 O VAL A 69 N VAL A 11 SHEET 4 AA10 VAL A 303 ALA A 307 1 O VAL A 303 N GLY A 70 SHEET 5 AA10 MET A 291 VAL A 296 -1 O SER A 293 N GLU A 306 SHEET 6 AA10 THR A 106 ALA A 111 -1 O THR A 106 N VAL A 296 SHEET 7 AA10 ILE A 128 HIS A 132 -1 O ILE A 130 N ARG A 109 SHEET 8 AA10 PHE A 265 CYS A 269 1 O PHE A 265 N ILE A 129 SHEET 9 AA10 LEU A 207 THR A 211 1 O TYR A 208 N ALA A 268 SHEET 10 AA10 TYR A 246 LEU A 250 1 O GLU A 247 N LEU A 209 SHEET 1 AB 4 THR A 142 VAL A 146 0 SHEET 2 AB 4 GLY A 177 GLN A 185 -1 O GLY A 177 N VAL A 146 SHEET 3 AB 4 GLY B 177 GLN B 185 -1 O VAL B 178 N ASN A 184 SHEET 4 AB 4 ALA B 141 VAL B 146 -1 O THR B 142 N GLY B 181 SHEET 1 AC 4 VAL A 165 PHE A 172 0 SHEET 2 AC 4 GLY A 150 PRO A 158 -1 O GLY A 150 N PHE A 172 SHEET 3 AC 4 GLY B 150 PRO B 158 -1 O LYS B 151 N THR A 157 SHEET 4 AC 4 VAL B 165 PHE B 172 -1 O VAL B 165 N TYR B 156 SHEET 1 BA10 VAL B 35 ASP B 43 0 SHEET 2 BA10 ILE B 5 GLN B 14 1 O ILE B 5 N GLU B 36 SHEET 3 BA10 VAL B 69 LYS B 72 1 O VAL B 69 N VAL B 11 SHEET 4 BA10 VAL B 303 ALA B 307 1 O VAL B 303 N GLY B 70 SHEET 5 BA10 MET B 291 VAL B 296 -1 O SER B 293 N GLU B 306 SHEET 6 BA10 THR B 106 ALA B 111 -1 O THR B 106 N VAL B 296 SHEET 7 BA10 LYS B 126 HIS B 133 -1 O ILE B 130 N ARG B 109 SHEET 8 BA10 GLY B 263 CYS B 269 1 N GLY B 264 O PRO B 127 SHEET 9 BA10 LEU B 207 THR B 211 1 O TYR B 208 N ALA B 268 SHEET 10 BA10 TYR B 246 LEU B 250 1 O GLU B 247 N LEU B 209 SITE 1 AC1 4 THR A 77 SER A 94 ASN A 96 ARG A 100 SITE 1 AC2 5 HIS A 170 PHE A 172 GLU A 173 GLU A 174 SITE 2 AC2 5 GLN B 185 SITE 1 AC3 7 GLN A 185 HIS B 170 ASN B 171 PHE B 172 SITE 2 AC3 7 GLU B 173 GLU B 174 HOH B2064 SITE 1 AC4 4 ASP B 16 GLU B 17 GLU B 47 HOH B2010 SITE 1 AC5 9 PHE A 354 LYS A 408 GLN A 411 ALA A 412 SITE 2 AC5 9 HOH A2178 TYR B 319 GLY B 322 GLN B 323 SITE 3 AC5 9 HOH B2084 SITE 1 AC6 23 LYS A 72 ALA A 74 THR A 75 ILE A 76 SITE 2 AC6 23 THR A 77 ARG A 82 ASN A 96 LEU A 288 SITE 3 AC6 23 GLU A 306 HIS A 309 GLY A 310 THR A 311 SITE 4 AC6 23 VAL A 312 THR A 313 ARG A 314 HIS A 315 SITE 5 AC6 23 THR A 327 ASN A 328 HOH A2058 HOH A2126 SITE 6 AC6 23 HOH A2128 HOH A2183 HOH A2184 SITE 1 AC7 22 HOH A2119 LYS B 72 ALA B 74 THR B 75 SITE 2 AC7 22 ILE B 76 THR B 77 ARG B 82 ASN B 96 SITE 3 AC7 22 LEU B 288 GLU B 306 HIS B 309 GLY B 310 SITE 4 AC7 22 THR B 311 VAL B 312 THR B 313 ARG B 314 SITE 5 AC7 22 HIS B 315 THR B 327 ASN B 328 HOH B2046 SITE 6 AC7 22 HOH B2074 HOH B2102 CRYST1 82.680 82.680 300.370 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012095 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003329 0.00000