HEADER TRANSFERASE 03-JUN-14 4UOF TITLE CRYSTALLOGRAPHIC STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE FROM TITLE 2 LITOPENAEUS VANNAMEI COMPLEXED WITH DADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE DIPHOSPHATE KINASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 2.7.4.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LITOPENAEUS VANNAMEI; SOURCE 3 ORGANISM_COMMON: PACIFIC WHITE SHRIMP; SOURCE 4 ORGANISM_TAXID: 6689; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: SALT INDUCIBLE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PJEXPRESS414 KEYWDS TRANSFERASE, BINARY, COMPLEX, DADP, PURINE, WHITE-SHRIMP, BINDING KEYWDS 2 SITE, DESOXYNUCLEOTIDE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.LOPEZ-ZAVALA,V.STOJANOFF,E.RUDINO-PINERA,R.R.SOTELO-MUNDO REVDAT 3 10-JAN-24 4UOF 1 REMARK LINK REVDAT 2 25-FEB-15 4UOF 1 JRNL REVDAT 1 10-SEP-14 4UOF 0 JRNL AUTH A.A.LOPEZ-ZAVALA,I.E.QUINTERO-REYEZ,J.S.CARRASCO-MIRANDA, JRNL AUTH 2 V.STOJANOFF,A.WEICHSEL,E.RUDINO-PINERA,R.R.SOTELO-MUNDO JRNL TITL STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE FROM THE PACIFIC JRNL TITL 2 SHRIMP (LITOPENAEUS VANNAMEI) IN BINARY COMPLEXES WITH JRNL TITL 3 PURINE AND PYRIMIDINE NUCLEOSIDE DIPHOSPHATES JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 79 1150 2014 JRNL REFN ESSN 1744-3091 JRNL PMID 25195883 JRNL DOI 10.1107/S2053230X1401557X REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 26423 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8553 - 4.5129 1.00 2914 136 0.1338 0.1921 REMARK 3 2 4.5129 - 3.5890 0.76 2127 109 0.1357 0.1713 REMARK 3 3 3.5890 - 3.1373 1.00 2798 132 0.1755 0.2087 REMARK 3 4 3.1373 - 2.8514 1.00 2742 173 0.1980 0.2751 REMARK 3 5 2.8514 - 2.6475 1.00 2745 144 0.2172 0.2857 REMARK 3 6 2.6475 - 2.4917 1.00 2750 137 0.2278 0.3092 REMARK 3 7 2.4917 - 2.3671 1.00 2732 146 0.2263 0.2938 REMARK 3 8 2.3671 - 2.2643 0.95 2397 141 0.2542 0.3139 REMARK 3 9 2.2643 - 2.1772 0.70 1283 67 0.3684 0.4207 REMARK 3 10 2.1772 - 2.1022 0.96 2601 149 0.2429 0.2991 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : 26.80 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 3749 REMARK 3 ANGLE : 1.394 5064 REMARK 3 CHIRALITY : 0.067 534 REMARK 3 PLANARITY : 0.007 633 REMARK 3 DIHEDRAL : 14.775 1404 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1290060867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 OPTICS : TOROIDAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26320 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 19.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1BE4 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1 M TRIS-HCL PH 8.5 AND 30% (W/V) PEG 4,000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.38000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.38000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.05500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 67.19000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.05500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.19000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.38000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.05500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 67.19000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.38000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.05500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 67.19000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 123 O HOH B 2089 1.92 REMARK 500 O HOH C 2056 O HOH C 2086 2.15 REMARK 500 O HOH C 2095 O HOH C 2096 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 108 CB CYS A 108 SG -0.131 REMARK 500 CYS C 108 CB CYS C 108 SG -0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 115 -17.39 44.01 REMARK 500 ILE B 115 -16.39 45.21 REMARK 500 ILE C 115 -18.66 47.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1153 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 DAT A1152 O1A 157.8 REMARK 620 3 DAT A1152 O3B 129.9 58.8 REMARK 620 4 HOH A2080 O 67.3 112.8 155.7 REMARK 620 5 HOH A2081 O 107.5 57.9 116.5 62.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1153 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DAT B1152 O2A REMARK 620 2 DAT B1152 O1B 79.4 REMARK 620 3 HOH B2101 O 78.1 157.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1153 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DAT C1152 O3B REMARK 620 2 DAT C1152 O1A 67.2 REMARK 620 3 HOH C2056 O 135.8 68.8 REMARK 620 4 HOH C2085 O 120.9 154.8 98.1 REMARK 620 5 HOH C2086 O 107.5 63.4 46.9 91.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DAT A 1152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DAT B 1152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DAT C 1152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 1153 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UOG RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE FROM REMARK 900 LITOPENAEUS VANNAMEI COMPLEXED WITH DCDP REMARK 900 RELATED ID: 4UOH RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE FROM REMARK 900 LITOPENAEUS VANNAMEI COMPLEXED WITH ADP DBREF 4UOF A 1 151 UNP A5J299 A5J299_LITVA 1 151 DBREF 4UOF B 1 151 UNP A5J299 A5J299_LITVA 1 151 DBREF 4UOF C 1 151 UNP A5J299 A5J299_LITVA 1 151 SEQRES 1 A 151 MET VAL ARG GLU ARG THR PHE ILE ALA VAL LYS PRO ASP SEQRES 2 A 151 GLY VAL GLN ARG GLY LEU ILE GLY GLU ILE ILE LYS ARG SEQRES 3 A 151 PHE GLU ALA LYS GLY PHE LYS LEU ALA GLY MET LYS TYR SEQRES 4 A 151 ILE GLN ALA SER GLU ASP LEU LEU LYS GLN HIS TYR ILE SEQRES 5 A 151 ASP LEU ALA ASP LYS PRO PHE TYR PRO GLY LEU CYS LYS SEQRES 6 A 151 TYR MET SER SER GLY PRO VAL VAL ALA MET CYS TRP GLU SEQRES 7 A 151 GLY THR GLY VAL VAL LYS THR ALA ARG VAL MET MET GLY SEQRES 8 A 151 GLU THR ARG PRO ALA ASP SER LYS PRO GLY THR ILE ARG SEQRES 9 A 151 GLY ASP PHE CYS ILE GLU VAL GLY ARG ASN ILE ILE HIS SEQRES 10 A 151 GLY SER ASP SER VAL GLU SER ALA ASN LYS GLU ILE ALA SEQRES 11 A 151 LEU TRP PHE LYS PRO GLU GLU LEU VAL SER TRP THR GLN SEQRES 12 A 151 THR ASN GLU SER TRP ILE TYR GLU SEQRES 1 B 151 MET VAL ARG GLU ARG THR PHE ILE ALA VAL LYS PRO ASP SEQRES 2 B 151 GLY VAL GLN ARG GLY LEU ILE GLY GLU ILE ILE LYS ARG SEQRES 3 B 151 PHE GLU ALA LYS GLY PHE LYS LEU ALA GLY MET LYS TYR SEQRES 4 B 151 ILE GLN ALA SER GLU ASP LEU LEU LYS GLN HIS TYR ILE SEQRES 5 B 151 ASP LEU ALA ASP LYS PRO PHE TYR PRO GLY LEU CYS LYS SEQRES 6 B 151 TYR MET SER SER GLY PRO VAL VAL ALA MET CYS TRP GLU SEQRES 7 B 151 GLY THR GLY VAL VAL LYS THR ALA ARG VAL MET MET GLY SEQRES 8 B 151 GLU THR ARG PRO ALA ASP SER LYS PRO GLY THR ILE ARG SEQRES 9 B 151 GLY ASP PHE CYS ILE GLU VAL GLY ARG ASN ILE ILE HIS SEQRES 10 B 151 GLY SER ASP SER VAL GLU SER ALA ASN LYS GLU ILE ALA SEQRES 11 B 151 LEU TRP PHE LYS PRO GLU GLU LEU VAL SER TRP THR GLN SEQRES 12 B 151 THR ASN GLU SER TRP ILE TYR GLU SEQRES 1 C 151 MET VAL ARG GLU ARG THR PHE ILE ALA VAL LYS PRO ASP SEQRES 2 C 151 GLY VAL GLN ARG GLY LEU ILE GLY GLU ILE ILE LYS ARG SEQRES 3 C 151 PHE GLU ALA LYS GLY PHE LYS LEU ALA GLY MET LYS TYR SEQRES 4 C 151 ILE GLN ALA SER GLU ASP LEU LEU LYS GLN HIS TYR ILE SEQRES 5 C 151 ASP LEU ALA ASP LYS PRO PHE TYR PRO GLY LEU CYS LYS SEQRES 6 C 151 TYR MET SER SER GLY PRO VAL VAL ALA MET CYS TRP GLU SEQRES 7 C 151 GLY THR GLY VAL VAL LYS THR ALA ARG VAL MET MET GLY SEQRES 8 C 151 GLU THR ARG PRO ALA ASP SER LYS PRO GLY THR ILE ARG SEQRES 9 C 151 GLY ASP PHE CYS ILE GLU VAL GLY ARG ASN ILE ILE HIS SEQRES 10 C 151 GLY SER ASP SER VAL GLU SER ALA ASN LYS GLU ILE ALA SEQRES 11 C 151 LEU TRP PHE LYS PRO GLU GLU LEU VAL SER TRP THR GLN SEQRES 12 C 151 THR ASN GLU SER TRP ILE TYR GLU HET DAT A1152 26 HET MG A1153 1 HET DAT B1152 26 HET MG B1153 1 HET DAT C1152 26 HET MG C1153 1 HETNAM DAT 2'-DEOXYADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN DAT DADP FORMUL 4 DAT 3(C10 H15 N5 O9 P2) FORMUL 5 MG 3(MG 2+) FORMUL 10 HOH *301(H2 O) HELIX 1 1 LYS A 11 ARG A 17 1 7 HELIX 2 2 LEU A 19 GLY A 31 1 13 HELIX 3 3 SER A 43 TYR A 51 1 9 HELIX 4 4 ILE A 52 ALA A 55 5 4 HELIX 5 5 PHE A 59 MET A 67 1 9 HELIX 6 6 GLY A 81 GLY A 91 1 11 HELIX 7 7 ARG A 94 SER A 98 5 5 HELIX 8 8 THR A 102 CYS A 108 1 7 HELIX 9 9 GLU A 110 ASN A 114 5 5 HELIX 10 10 SER A 121 PHE A 133 1 13 HELIX 11 11 LYS A 134 LEU A 138 5 5 HELIX 12 12 ASN A 145 TYR A 150 1 6 HELIX 13 13 LYS B 11 ARG B 17 1 7 HELIX 14 14 LEU B 19 GLY B 31 1 13 HELIX 15 15 SER B 43 TYR B 51 1 9 HELIX 16 16 ILE B 52 ALA B 55 5 4 HELIX 17 17 PHE B 59 MET B 67 1 9 HELIX 18 18 GLY B 81 GLY B 91 1 11 HELIX 19 19 ARG B 94 SER B 98 5 5 HELIX 20 20 THR B 102 CYS B 108 1 7 HELIX 21 21 GLU B 110 ASN B 114 5 5 HELIX 22 22 SER B 121 PHE B 133 1 13 HELIX 23 23 LYS B 134 LEU B 138 5 5 HELIX 24 24 ASN B 145 TYR B 150 1 6 HELIX 25 25 LYS C 11 ARG C 17 1 7 HELIX 26 26 LEU C 19 GLY C 31 1 13 HELIX 27 27 SER C 43 TYR C 51 1 9 HELIX 28 28 ILE C 52 ALA C 55 5 4 HELIX 29 29 PHE C 59 SER C 68 1 10 HELIX 30 30 GLY C 81 GLY C 91 1 11 HELIX 31 31 ARG C 94 SER C 98 5 5 HELIX 32 32 THR C 102 CYS C 108 1 7 HELIX 33 33 SER C 121 PHE C 133 1 13 HELIX 34 34 LYS C 134 LEU C 138 5 5 HELIX 35 35 ASN C 145 TYR C 150 1 6 SHEET 1 AA 4 LYS A 33 ILE A 40 0 SHEET 2 AA 4 VAL A 72 GLU A 78 -1 O VAL A 72 N ILE A 40 SHEET 3 AA 4 ARG A 5 VAL A 10 -1 O THR A 6 N TRP A 77 SHEET 4 AA 4 ILE A 116 GLY A 118 -1 O HIS A 117 N ALA A 9 SHEET 1 BA 4 LYS B 33 ILE B 40 0 SHEET 2 BA 4 VAL B 72 GLU B 78 -1 O VAL B 72 N ILE B 40 SHEET 3 BA 4 ARG B 5 VAL B 10 -1 O THR B 6 N TRP B 77 SHEET 4 BA 4 ILE B 116 GLY B 118 -1 O HIS B 117 N ALA B 9 SHEET 1 CA 4 LYS C 33 ILE C 40 0 SHEET 2 CA 4 VAL C 72 GLU C 78 -1 O VAL C 72 N ILE C 40 SHEET 3 CA 4 ARG C 5 VAL C 10 -1 O THR C 6 N TRP C 77 SHEET 4 CA 4 ILE C 116 GLY C 118 -1 O HIS C 117 N ALA C 9 LINK OD2 ASP A 120 MG MG A1153 1555 1555 2.39 LINK O1A DAT A1152 MG MG A1153 1555 1555 2.57 LINK O3B DAT A1152 MG MG A1153 1555 1555 2.74 LINK MG MG A1153 O HOH A2080 1555 1555 2.71 LINK MG MG A1153 O HOH A2081 1555 1555 1.94 LINK O2A DAT B1152 MG MG B1153 1555 1555 2.26 LINK O1B DAT B1152 MG MG B1153 1555 1555 2.69 LINK MG MG B1153 O HOH B2101 1555 1555 2.43 LINK O3B DAT C1152 MG MG C1153 1555 1555 2.62 LINK O1A DAT C1152 MG MG C1153 1555 1555 2.62 LINK MG MG C1153 O HOH C2056 1555 1555 2.90 LINK MG MG C1153 O HOH C2085 1555 1555 2.94 LINK MG MG C1153 O HOH C2086 1555 1555 2.32 SITE 1 AC1 14 LYS A 11 TYR A 51 LEU A 54 PHE A 59 SITE 2 AC1 14 LEU A 63 ARG A 87 THR A 93 ARG A 94 SITE 3 AC1 14 VAL A 111 ASN A 114 MG A1153 HOH A2013 SITE 4 AC1 14 HOH A2081 HOH A2094 SITE 1 AC2 15 LYS B 11 TYR B 51 LEU B 54 PHE B 59 SITE 2 AC2 15 LEU B 63 ARG B 87 THR B 93 ARG B 94 SITE 3 AC2 15 VAL B 111 ASN B 114 MG B1153 HOH B2062 SITE 4 AC2 15 HOH B2063 HOH B2100 HOH B2101 SITE 1 AC3 18 LYS C 11 TYR C 51 LEU C 54 PHE C 59 SITE 2 AC3 18 LEU C 63 ARG C 87 THR C 93 ARG C 104 SITE 3 AC3 18 VAL C 111 ASN C 114 MG C1153 HOH C2015 SITE 4 AC3 18 HOH C2067 HOH C2069 HOH C2076 HOH C2086 SITE 5 AC3 18 HOH C2104 HOH C2105 SITE 1 AC4 4 ASP A 120 DAT A1152 HOH A2080 HOH A2081 SITE 1 AC5 2 DAT B1152 HOH B2101 SITE 1 AC6 5 HIS C 117 DAT C1152 HOH C2056 HOH C2085 SITE 2 AC6 5 HOH C2086 CRYST1 70.110 134.380 104.760 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014263 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007442 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009546 0.00000