HEADER OXIDOREDUCTASE 28-JUN-14 4URE TITLE MOLECULAR GENETIC AND CRYSTAL STRUCTURAL ANALYSIS OF 1-(4- TITLE 2 HYDROXYPHENYL)-ETHANOL DEHYDROGENASE FROM AROMATOLEUM AROMATICUM EBN1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLOHEXANOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HYDROXYPHENYL-ETHANOL DEHYDROGENASE; COMPND 5 EC: 1.1.1.311; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AROMATOLEUM AROMATICUM EBN1; SOURCE 3 ORGANISM_TAXID: 76114; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, SHORT CHAIN DEHYDROGENASE, AROMATIC COMPOUNDS, KEYWDS 2 ANAEROBIC DEGRADATION, ALCOHOL DEHYDROGENASE, MOLECULAR GENETICS, KEYWDS 3 STEREOCHEMISTRY EXPDTA X-RAY DIFFRACTION AUTHOR I.BUESING,H.W.HOEFFKEN,M.BREUER,L.WOEHLBRAND,B.HAUER,R.RABUS REVDAT 4 10-JAN-24 4URE 1 REMARK HETSYN LINK REVDAT 3 08-MAY-19 4URE 1 REMARK REVDAT 2 13-JAN-16 4URE 1 JRNL REVDAT 1 08-JUL-15 4URE 0 JRNL AUTH I.BUSING,H.W.HOFFKEN,M.BREUER,L.WOHLBRAND,B.HAUER,R.RABUS JRNL TITL MOLECULAR GENETIC AND CRYSTAL STRUCTURAL ANALYSIS OF JRNL TITL 2 1-(4-HYDROXYPHENYL)-ETHANOL DEHYDROGENASE FROM 'AROMATOLEUM JRNL TITL 3 AROMATICUM' EBN1. JRNL REF J.MOL.MICROBIOL.BIOTECHNOL. V. 25 327 2015 JRNL REFN ISSN 1464-1801 JRNL PMID 26488297 JRNL DOI 10.1159/000439113 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 69759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3672 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3232 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3694 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 375 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.205 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3967 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3782 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5414 ; 1.873 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8660 ; 0.941 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 532 ; 6.475 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;36.270 ;23.795 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 629 ;13.160 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;16.892 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 617 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4698 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 928 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2080 ; 3.241 ; 1.763 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2076 ; 3.238 ; 1.764 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2626 ; 3.497 ; 2.652 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1887 ; 4.739 ; 2.124 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7749 ; 5.153 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 108 ;29.264 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7941 ;13.080 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4URE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1290061109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73410 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 31.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1IY8 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP METHOD IN A BUFFER REMARK 280 CONTAINING 30% PEG 6000, 0.1 M NA-CACODYLATE (PH 6.5), 0.3 M MG- REMARK 280 ACETATE, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.75000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.75000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -196.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 61.11905 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 61.65899 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A1250 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2053 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2199 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2164 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2112 O HOH A 2113 1.37 REMARK 500 O HOH A 2059 O HOH A 2063 1.96 REMARK 500 OG SER B 175 O HOH B 2130 2.04 REMARK 500 O HOH B 2083 O HOH B 2084 2.06 REMARK 500 OE1 GLU A 44 O HOH A 2027 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2047 O HOH B 2103 3444 1.50 REMARK 500 OE2 GLU A 199 O HOH A 2148 1545 1.80 REMARK 500 O HOH B 2163 O HOH B 2163 2656 2.01 REMARK 500 O HOH A 2197 O HOH A 2197 2656 2.09 REMARK 500 OG SER A 175 OE2 GLU A 199 1565 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 217 CD GLU A 217 OE1 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 211 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 78 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 MET B 207 CG - SD - CE ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG B 211 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 211 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 90 -134.34 -140.61 REMARK 500 SER A 141 -127.70 -90.17 REMARK 500 ALA A 186 -151.21 -87.32 REMARK 500 ALA B 90 -153.49 66.51 REMARK 500 LEU B 115 -65.32 -123.41 REMARK 500 SER B 141 -122.62 -93.98 REMARK 500 GLN B 146 -31.28 -130.10 REMARK 500 ALA B 186 -144.57 -91.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2171 DISTANCE = 6.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1250 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 248 OXT REMARK 620 2 ARG A 248 OXT 179.4 REMARK 620 3 HOH A2194 O 94.3 85.7 REMARK 620 4 HOH A2194 O 85.7 94.3 178.6 REMARK 620 5 HOH A2196 O 77.9 101.5 78.5 100.1 REMARK 620 6 HOH A2196 O 101.5 77.9 100.1 78.5 33.6 REMARK 620 7 HOH A2199 O 90.3 90.3 90.7 90.7 163.2 163.2 REMARK 620 8 HOH A2199 O 90.3 90.3 90.7 90.8 163.2 163.2 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1251 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 248 OXT REMARK 620 2 ARG B 248 OXT 172.8 REMARK 620 3 HOH B2160 O 81.1 105.2 REMARK 620 4 HOH B2160 O 83.2 90.0 162.5 REMARK 620 5 HOH B2162 O 95.5 88.6 85.3 104.0 REMARK 620 6 HOH B2162 O 72.6 108.6 105.2 77.2 33.6 REMARK 620 7 HOH B2164 O 81.2 95.3 87.3 82.7 172.3 148.5 REMARK 620 8 HOH B2164 O 81.3 95.3 87.3 82.7 172.3 148.5 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PS B 1250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1254 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4URF RELATED DB: PDB REMARK 900 MOLECULAR GENETIC AND CRYSTAL STRUCTURAL ANALYSIS OF 1 -(4- REMARK 900 HYDROXYPHENYL)-ETHANOL DEHYDROGENASE FROM AROMATOLEUM AROMATICUM REMARK 900 EBN1 DBREF 4URE A 1 248 UNP Q5P8S7 Q5P8S7_AROAE 1 248 DBREF 4URE B 1 248 UNP Q5P8S7 Q5P8S7_AROAE 1 248 SEQRES 1 A 248 MET LEU LEU GLU GLY LYS THR ALA LEU VAL THR GLY ALA SEQRES 2 A 248 GLY ASN GLY ILE GLY ARG THR ILE ALA LEU THR TYR ALA SEQRES 3 A 248 ALA GLU GLY ALA ASN VAL VAL VAL SER ASP ILE SER ASP SEQRES 4 A 248 GLU TRP GLY ARG GLU THR LEU ALA LEU ILE GLU GLY LYS SEQRES 5 A 248 GLY GLY LYS ALA VAL PHE GLN HIS ALA ASP THR ALA HIS SEQRES 6 A 248 PRO GLU ASP HIS ASP GLU LEU ILE ALA ALA ALA LYS ARG SEQRES 7 A 248 ALA PHE GLY ARG LEU ASP ILE ALA CYS ASN ASN ALA GLY SEQRES 8 A 248 ILE SER GLY GLU PHE THR PRO THR ALA GLU THR THR ASP SEQRES 9 A 248 ALA GLN TRP GLN ARG VAL ILE GLY ILE ASN LEU SER GLY SEQRES 10 A 248 VAL PHE TYR GLY VAL ARG ALA GLN ILE ARG ALA MET LEU SEQRES 11 A 248 GLU THR GLY GLY GLY ALA ILE VAL ASN ILE SER SER ILE SEQRES 12 A 248 ALA GLY GLN ILE GLY ILE GLU GLY ILE THR PRO TYR THR SEQRES 13 A 248 ALA ALA LYS HIS GLY VAL VAL GLY LEU THR LYS THR VAL SEQRES 14 A 248 ALA TRP GLU TYR GLY SER LYS GLY ILE ARG ILE ASN SER SEQRES 15 A 248 VAL GLY PRO ALA PHE ILE ASN THR THR LEU VAL GLN ASN SEQRES 16 A 248 VAL PRO LEU GLU THR ARG ARG GLN LEU GLU GLN MET HIS SEQRES 17 A 248 ALA LEU ARG ARG LEU GLY GLU THR GLU GLU VAL ALA ASN SEQRES 18 A 248 LEU VAL ALA TRP LEU SER SER ASP LYS ALA SER PHE VAL SEQRES 19 A 248 THR GLY SER TYR TYR ALA VAL ASP GLY GLY TYR LEU ALA SEQRES 20 A 248 ARG SEQRES 1 B 248 MET LEU LEU GLU GLY LYS THR ALA LEU VAL THR GLY ALA SEQRES 2 B 248 GLY ASN GLY ILE GLY ARG THR ILE ALA LEU THR TYR ALA SEQRES 3 B 248 ALA GLU GLY ALA ASN VAL VAL VAL SER ASP ILE SER ASP SEQRES 4 B 248 GLU TRP GLY ARG GLU THR LEU ALA LEU ILE GLU GLY LYS SEQRES 5 B 248 GLY GLY LYS ALA VAL PHE GLN HIS ALA ASP THR ALA HIS SEQRES 6 B 248 PRO GLU ASP HIS ASP GLU LEU ILE ALA ALA ALA LYS ARG SEQRES 7 B 248 ALA PHE GLY ARG LEU ASP ILE ALA CYS ASN ASN ALA GLY SEQRES 8 B 248 ILE SER GLY GLU PHE THR PRO THR ALA GLU THR THR ASP SEQRES 9 B 248 ALA GLN TRP GLN ARG VAL ILE GLY ILE ASN LEU SER GLY SEQRES 10 B 248 VAL PHE TYR GLY VAL ARG ALA GLN ILE ARG ALA MET LEU SEQRES 11 B 248 GLU THR GLY GLY GLY ALA ILE VAL ASN ILE SER SER ILE SEQRES 12 B 248 ALA GLY GLN ILE GLY ILE GLU GLY ILE THR PRO TYR THR SEQRES 13 B 248 ALA ALA LYS HIS GLY VAL VAL GLY LEU THR LYS THR VAL SEQRES 14 B 248 ALA TRP GLU TYR GLY SER LYS GLY ILE ARG ILE ASN SER SEQRES 15 B 248 VAL GLY PRO ALA PHE ILE ASN THR THR LEU VAL GLN ASN SEQRES 16 B 248 VAL PRO LEU GLU THR ARG ARG GLN LEU GLU GLN MET HIS SEQRES 17 B 248 ALA LEU ARG ARG LEU GLY GLU THR GLU GLU VAL ALA ASN SEQRES 18 B 248 LEU VAL ALA TRP LEU SER SER ASP LYS ALA SER PHE VAL SEQRES 19 B 248 THR GLY SER TYR TYR ALA VAL ASP GLY GLY TYR LEU ALA SEQRES 20 B 248 ARG HET SO4 A1249 5 HET MG A1250 1 HET SO4 B1249 5 HET 1PS B1250 13 HET MG B1251 1 HET ACT B1252 4 HET ACT B1253 4 HET ACT B1254 4 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM 1PS 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE HETNAM ACT ACETATE ION HETSYN 1PS 1-(3-SULFOPROPYL) PYRIDINIUM; PPS FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 MG 2(MG 2+) FORMUL 6 1PS C8 H11 N O3 S FORMUL 8 ACT 3(C2 H3 O2 1-) FORMUL 11 HOH *375(H2 O) HELIX 1 1 ASN A 15 GLU A 28 1 14 HELIX 2 2 SER A 38 LYS A 52 1 15 HELIX 3 3 HIS A 65 GLY A 81 1 17 HELIX 4 4 PRO A 98 THR A 102 5 5 HELIX 5 5 THR A 103 LEU A 115 1 13 HELIX 6 6 LEU A 115 THR A 132 1 18 HELIX 7 7 SER A 142 GLN A 146 5 5 HELIX 8 8 ILE A 152 GLY A 174 1 23 HELIX 9 9 THR A 190 ASN A 195 1 6 HELIX 10 10 PRO A 197 GLN A 206 1 10 HELIX 11 11 GLU A 215 SER A 227 1 13 HELIX 12 12 SER A 228 SER A 232 5 5 HELIX 13 13 GLY A 244 ARG A 248 5 5 HELIX 14 14 ASN B 15 GLU B 28 1 14 HELIX 15 15 SER B 38 LYS B 52 1 15 HELIX 16 16 HIS B 65 GLY B 81 1 17 HELIX 17 17 PRO B 98 THR B 102 5 5 HELIX 18 18 THR B 103 LEU B 115 1 13 HELIX 19 19 LEU B 115 THR B 132 1 18 HELIX 20 20 SER B 142 GLN B 146 5 5 HELIX 21 21 ILE B 152 GLY B 174 1 23 HELIX 22 22 THR B 190 ASN B 195 1 6 HELIX 23 23 PRO B 197 GLN B 206 1 10 HELIX 24 24 GLU B 215 SER B 227 1 13 HELIX 25 25 SER B 228 SER B 232 5 5 HELIX 26 26 GLY B 244 ARG B 248 5 5 SHEET 1 AA 7 ALA A 56 PHE A 58 0 SHEET 2 AA 7 ASN A 31 VAL A 34 1 O VAL A 32 N VAL A 57 SHEET 3 AA 7 THR A 7 VAL A 10 1 O ALA A 8 N VAL A 33 SHEET 4 AA 7 ILE A 85 ASN A 88 1 O ILE A 85 N LEU A 9 SHEET 5 AA 7 GLY A 135 ILE A 140 1 O ALA A 136 N ALA A 86 SHEET 6 AA 7 ILE A 178 PRO A 185 1 O ARG A 179 N ILE A 137 SHEET 7 AA 7 TYR A 238 VAL A 241 1 O TYR A 239 N GLY A 184 SHEET 1 BA 7 ALA B 56 HIS B 60 0 SHEET 2 BA 7 ASN B 31 ASP B 36 1 O VAL B 32 N VAL B 57 SHEET 3 BA 7 THR B 7 VAL B 10 1 O ALA B 8 N VAL B 33 SHEET 4 BA 7 ILE B 85 ASN B 88 1 O ILE B 85 N LEU B 9 SHEET 5 BA 7 GLY B 135 ILE B 140 1 O ALA B 136 N ALA B 86 SHEET 6 BA 7 ILE B 178 PRO B 185 1 O ARG B 179 N ILE B 137 SHEET 7 BA 7 TYR B 238 VAL B 241 1 O TYR B 239 N GLY B 184 LINK OXT ARG A 248 MG MG A1250 1555 1555 2.03 LINK OXT ARG A 248 MG MG A1250 2656 1555 2.03 LINK MG MG A1250 O HOH A2194 1555 1555 2.08 LINK MG MG A1250 O HOH A2194 1555 2656 2.08 LINK MG MG A1250 O HOH A2196 1555 1555 2.11 LINK MG MG A1250 O HOH A2196 1555 2656 2.11 LINK MG MG A1250 O HOH A2199 1555 1555 2.06 LINK MG MG A1250 O HOH A2199 1555 2656 2.06 LINK OXT ARG B 248 MG MG B1251 2656 1555 2.32 LINK OXT ARG B 248 MG MG B1251 1555 1555 1.77 LINK MG MG B1251 O HOH B2160 1555 1555 2.00 LINK MG MG B1251 O HOH B2160 1555 2656 2.19 LINK MG MG B1251 O HOH B2162 1555 1555 2.07 LINK MG MG B1251 O HOH B2162 1555 2656 2.22 LINK MG MG B1251 O HOH B2164 1555 1555 2.17 LINK MG MG B1251 O HOH B2164 1555 2656 2.17 SITE 1 AC1 6 SER A 142 TYR A 155 ALA A 186 HOH A2154 SITE 2 AC1 6 HOH A2203 HOH A2204 SITE 1 AC2 5 ILE B 92 THR B 190 LEU B 192 VAL B 193 SITE 2 AC2 5 1PS B1250 SITE 1 AC3 15 ASN B 15 GLY B 16 ILE B 17 GLY B 18 SITE 2 AC3 15 ASN B 89 GLY B 91 SER B 141 TYR B 155 SITE 3 AC3 15 PRO B 185 ALA B 186 THR B 190 SO4 B1249 SITE 4 AC3 15 ACT B1253 HOH B2017 HOH B2087 SITE 1 AC4 4 ARG B 248 HOH B2160 HOH B2162 HOH B2164 SITE 1 AC5 4 ARG A 248 HOH A2194 HOH A2196 HOH A2199 SITE 1 AC6 7 HOH A2064 ARG B 19 THR B 20 LEU B 23 SITE 2 AC6 7 HOH B2022 HOH B2153 HOH B2170 SITE 1 AC7 5 SER B 142 TYR B 155 1PS B1250 HOH B2093 SITE 2 AC7 5 HOH B2168 SITE 1 AC8 4 ASN B 15 GLY B 16 THR B 191 LEU B 192 CRYST1 121.500 55.100 86.300 90.00 134.40 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008230 0.000000 0.008060 0.00000 SCALE2 0.000000 0.018149 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016218 0.00000