HEADER LYASE 30-JUN-14 4URG TITLE CRYSTAL STRUCTURE OF GGDEF DOMAIN FROM T.MARITIMA (ACTIVE-LIKE DIMER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIGUANYLATE CYCLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GGDEF DOAMIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DEEPTHI,C.W.LIEW,Z.X.LIANG,K.SWAMINATHAN,J.LESCAR REVDAT 3 10-JAN-24 4URG 1 REMARK HETSYN REVDAT 2 12-NOV-14 4URG 1 JRNL REVDAT 1 08-OCT-14 4URG 0 JRNL AUTH A.DEEPTHI,C.W.LIEW,Z.X.LIANG,S.KUNCHITHAPADAM,J.LESCAR JRNL TITL STRUCTURE OF A DIGUANYLATE CYCLASE FROM THERMOTOGA MARITIMA: JRNL TITL 2 INSIGHTS INTO ACTIVATION, FEEDBACK INHIBITION AND JRNL TITL 3 THERMOSTABILITY JRNL REF PLOS ONE V. 9 10912 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25360685 JRNL DOI 10.1371/JOURNAL.PONE.0110912 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1362 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2827 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2081 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2686 REMARK 3 BIN R VALUE (WORKING SET) : 0.2079 REMARK 3 BIN FREE R VALUE : 0.2109 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.99 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86750 REMARK 3 B22 (A**2) : -0.12050 REMARK 3 B33 (A**2) : -0.74690 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.17730 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.236 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.162 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.145 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.163 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.146 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2682 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3633 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 962 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 63 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 381 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2682 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 326 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3089 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.05 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.44 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4URG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1290061121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27197 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 36.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 3ICL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M LITHIUM SULFATE, 0.1 M CITRIC REMARK 280 ACID (PH 4.0), 10% (W/V) PEG 6000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.44500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.06000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.44500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.06000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 240 REMARK 465 LYS A 241 REMARK 465 VAL A 242 REMARK 465 PRO A 243 REMARK 465 TYR A 244 REMARK 465 PHE A 245 REMARK 465 SER A 246 REMARK 465 LEU A 247 REMARK 465 SER A 248 REMARK 465 LEU A 249 REMARK 465 GLU A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS B 90 REMARK 465 LEU B 247 REMARK 465 SER B 248 REMARK 465 LEU B 249 REMARK 465 GLU B 250 REMARK 465 HIS B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 115 O TYR B 176 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 177 61.03 60.32 REMARK 500 ASN A 202 -2.86 76.64 REMARK 500 TYR B 166 -76.06 -86.53 REMARK 500 GLU B 201 -114.13 58.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E A 1240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E A 1241 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4URQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GGDEF DOMAIN (I SITE MUTANT) FROM T.MARITIMA REMARK 900 RELATED ID: 4URS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GGDEF DOMAIN FROM T.MARITIMA DBREF 4URG A 90 248 UNP Q9X2A8 Q9X2A8_THEMA 90 248 DBREF 4URG B 90 248 UNP Q9X2A8 Q9X2A8_THEMA 90 248 SEQADV 4URG LEU A 249 UNP Q9X2A8 EXPRESSION TAG SEQADV 4URG GLU A 250 UNP Q9X2A8 EXPRESSION TAG SEQADV 4URG HIS A 251 UNP Q9X2A8 EXPRESSION TAG SEQADV 4URG HIS A 252 UNP Q9X2A8 EXPRESSION TAG SEQADV 4URG HIS A 253 UNP Q9X2A8 EXPRESSION TAG SEQADV 4URG HIS A 254 UNP Q9X2A8 EXPRESSION TAG SEQADV 4URG HIS A 255 UNP Q9X2A8 EXPRESSION TAG SEQADV 4URG HIS A 256 UNP Q9X2A8 EXPRESSION TAG SEQADV 4URG LEU B 249 UNP Q9X2A8 EXPRESSION TAG SEQADV 4URG GLU B 250 UNP Q9X2A8 EXPRESSION TAG SEQADV 4URG HIS B 251 UNP Q9X2A8 EXPRESSION TAG SEQADV 4URG HIS B 252 UNP Q9X2A8 EXPRESSION TAG SEQADV 4URG HIS B 253 UNP Q9X2A8 EXPRESSION TAG SEQADV 4URG HIS B 254 UNP Q9X2A8 EXPRESSION TAG SEQADV 4URG HIS B 255 UNP Q9X2A8 EXPRESSION TAG SEQADV 4URG HIS B 256 UNP Q9X2A8 EXPRESSION TAG SEQRES 1 A 167 HIS ASP PRO LEU THR GLY LEU PRO ASN ARG ARG TYR PHE SEQRES 2 A 167 PHE GLU LEU GLY ASN ARG TYR LEU ASP LEU ALA LYS ARG SEQRES 3 A 167 GLU GLY LYS LYS VAL PHE VAL LEU PHE VAL ASP LEU ALA SEQRES 4 A 167 GLY PHE LYS ALA ILE ASN ASP THR TYR GLY HIS LEU SER SEQRES 5 A 167 GLY ASP GLU VAL LEU LYS THR VAL SER LYS ARG ILE LEU SEQRES 6 A 167 ASP ARG VAL ARG ARG SER ASP VAL VAL ALA ARG TYR GLY SEQRES 7 A 167 GLY ASP GLU PHE THR ILE LEU LEU TYR ASP MET LYS GLU SEQRES 8 A 167 GLU TYR LEU LYS SER LEU LEU GLU ARG ILE LEU SER THR SEQRES 9 A 167 PHE ARG GLU PRO VAL ARG VAL GLU ASN LYS HIS LEU SER SEQRES 10 A 167 VAL THR PRO ASN ILE GLY VAL ALA ARG PHE PRO GLU ASP SEQRES 11 A 167 GLY GLU ASN LEU GLU GLU LEU LEU LYS VAL ALA ASP MET SEQRES 12 A 167 ARG MET TYR LYS ALA LYS GLU MET LYS VAL PRO TYR PHE SEQRES 13 A 167 SER LEU SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 167 HIS ASP PRO LEU THR GLY LEU PRO ASN ARG ARG TYR PHE SEQRES 2 B 167 PHE GLU LEU GLY ASN ARG TYR LEU ASP LEU ALA LYS ARG SEQRES 3 B 167 GLU GLY LYS LYS VAL PHE VAL LEU PHE VAL ASP LEU ALA SEQRES 4 B 167 GLY PHE LYS ALA ILE ASN ASP THR TYR GLY HIS LEU SER SEQRES 5 B 167 GLY ASP GLU VAL LEU LYS THR VAL SER LYS ARG ILE LEU SEQRES 6 B 167 ASP ARG VAL ARG ARG SER ASP VAL VAL ALA ARG TYR GLY SEQRES 7 B 167 GLY ASP GLU PHE THR ILE LEU LEU TYR ASP MET LYS GLU SEQRES 8 B 167 GLU TYR LEU LYS SER LEU LEU GLU ARG ILE LEU SER THR SEQRES 9 B 167 PHE ARG GLU PRO VAL ARG VAL GLU ASN LYS HIS LEU SER SEQRES 10 B 167 VAL THR PRO ASN ILE GLY VAL ALA ARG PHE PRO GLU ASP SEQRES 11 B 167 GLY GLU ASN LEU GLU GLU LEU LEU LYS VAL ALA ASP MET SEQRES 12 B 167 ARG MET TYR LYS ALA LYS GLU MET LYS VAL PRO TYR PHE SEQRES 13 B 167 SER LEU SER LEU GLU HIS HIS HIS HIS HIS HIS HET C2E A1240 46 HET C2E A1241 46 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 C2E 2(C20 H24 N10 O14 P2) FORMUL 5 HOH *144(H2 O) HELIX 1 1 ASN A 98 GLY A 117 1 20 HELIX 2 2 GLY A 129 GLY A 138 1 10 HELIX 3 3 GLY A 138 ASP A 155 1 18 HELIX 4 4 LYS A 179 GLU A 196 1 18 HELIX 5 5 ASN A 222 LYS A 238 1 17 HELIX 6 6 ASN B 98 GLY B 117 1 20 HELIX 7 7 GLY B 129 GLY B 138 1 10 HELIX 8 8 GLY B 138 ASP B 155 1 18 HELIX 9 9 LYS B 179 GLU B 196 1 18 HELIX 10 10 ASN B 222 MET B 240 1 19 SHEET 1 AA 4 VAL A 162 GLY A 167 0 SHEET 2 AA 4 GLU A 170 TYR A 176 -1 O GLU A 170 N TYR A 166 SHEET 3 AA 4 VAL A 120 ALA A 128 -1 O PHE A 121 N LEU A 175 SHEET 4 AA 4 THR A 208 PHE A 216 -1 O THR A 208 N ALA A 128 SHEET 1 AB 2 VAL A 198 VAL A 200 0 SHEET 2 AB 2 LYS A 203 LEU A 205 -1 O LYS A 203 N VAL A 200 SHEET 1 BA 5 VAL B 162 ARG B 165 0 SHEET 2 BA 5 GLU B 170 TYR B 176 -1 O THR B 172 N ALA B 164 SHEET 3 BA 5 VAL B 120 ALA B 128 -1 O PHE B 121 N LEU B 175 SHEET 4 BA 5 THR B 208 PHE B 216 -1 O THR B 208 N ALA B 128 SHEET 5 BA 5 TYR B 244 PHE B 245 1 O PHE B 245 N VAL B 213 SHEET 1 BB 2 VAL B 198 VAL B 200 0 SHEET 2 BB 2 LYS B 203 LEU B 205 -1 O LYS B 203 N VAL B 200 CISPEP 1 PHE A 216 PRO A 217 0 7.02 CISPEP 2 PHE B 216 PRO B 217 0 5.53 SITE 1 AC1 22 ARG A 158 ASP A 161 TYR A 176 TYR A 182 SITE 2 AC1 22 LEU A 186 ARG A 189 C2E A1241 HOH A2038 SITE 3 AC1 22 HOH A2040 HOH A2054 HOH A2060 HOH A2084 SITE 4 AC1 22 HOH A2085 HOH A2086 HOH A2087 ARG B 115 SITE 5 AC1 22 ASP B 155 ARG B 156 VAL B 157 ARG B 158 SITE 6 AC1 22 ARG B 189 HOH B2020 SITE 1 AC2 20 LYS A 114 ARG A 115 ASP A 155 ARG A 156 SITE 2 AC2 20 VAL A 157 ARG A 158 ARG A 159 ARG A 189 SITE 3 AC2 20 C2E A1240 HOH A2041 HOH A2042 HOH A2063 SITE 4 AC2 20 HOH A2089 HOH A2091 HOH A2092 ARG B 115 SITE 5 AC2 20 ARG B 158 TYR B 182 HOH B2026 HOH B2037 CRYST1 108.890 52.120 73.710 90.00 124.05 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009184 0.000000 0.006206 0.00000 SCALE2 0.000000 0.019186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016374 0.00000 MTRIX1 1 -0.936320 0.209370 0.281920 1.72200 1 MTRIX2 1 -0.224790 -0.974130 -0.023140 -9.02798 1 MTRIX3 1 0.269780 -0.085040 0.959160 6.06506 1