HEADER TRANSFERASE 18-JUL-14 4UT4 TITLE BURKHOLDERIA PSEUDOMALLEI HEPTOKINASE WCBL, D-MANNOSE COMPLEX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SUGAR KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-GLYCERO-BETA-D-MANNO-HEPTOSE-7-PHOSPHATE KINASE, WCBL; COMPND 5 EC: 2.7.1.167; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI K96243; SOURCE 3 ORGANISM_TAXID: 272560; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PNIC28-BSA4 KEYWDS TRANSFERASE, CAPSULAR POLYSACCHARIDE, DRUG DISCOVERY, HEPTOPYRANOSE EXPDTA X-RAY DIFFRACTION AUTHOR M.VIVOLI,M.N.ISUPOV,R.NICHOLAS,A.HILL,A.SCOTT,P.KOSMA,J.PRIOR, AUTHOR 2 N.J.HARMER REVDAT 4 08-MAY-24 4UT4 1 HETSYN REVDAT 3 29-JUL-20 4UT4 1 COMPND REMARK HETNAM SITE REVDAT 2 28-JUN-17 4UT4 1 REMARK REVDAT 1 13-JAN-16 4UT4 0 JRNL AUTH M.VIVOLI,M.N.ISUPOV,R.NICHOLAS,A.HILL,A.E.SCOTT,P.KOSMA, JRNL AUTH 2 J.L.PRIOR,N.J.HARMER JRNL TITL UNRAVELING THE B.PSEUDOMALLEI HEPTOKINASE WCBL: FROM JRNL TITL 2 STRUCTURE TO DRUG DISCOVERY. JRNL REF CHEM.BIOL. V. 22 1622 2015 JRNL REFN ISSN 1074-5521 JRNL PMID 26687481 JRNL DOI 10.1016/J.CHEMBIOL.2015.10.015 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 69344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3714 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5038 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 266 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 797 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : -1.68000 REMARK 3 B33 (A**2) : 1.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.657 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5908 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8094 ; 1.218 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 822 ; 5.273 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 269 ;31.587 ;23.011 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1057 ;14.755 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;18.422 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 923 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4529 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2913 ; 3.770 ; 6.824 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3678 ; 4.854 ;11.401 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2991 ; 4.991 ; 7.844 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4UT4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1290061268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73109 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 69.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, ARP/WARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M NACL, 10 MM HEPES PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.04500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.04500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.16500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.16500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.04500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.55000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.16500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 84.04500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.55000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.16500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 84.04500 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 84.04500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 40 OD2 ASP B 40 3555 1.63 REMARK 500 OD2 ASP A 40 OD2 ASP A 40 3555 1.67 REMARK 500 OG1 THR A 312 O HOH A 2009 3555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 -70.74 -24.87 REMARK 500 ASP A 40 36.80 -84.84 REMARK 500 SER A 71 34.55 -82.46 REMARK 500 SER A 71 35.66 -83.51 REMARK 500 PRO A 137 41.53 -87.64 REMARK 500 VAL A 153 -64.79 -101.63 REMARK 500 ASP B 40 38.06 -84.50 REMARK 500 PRO B 137 42.52 -90.72 REMARK 500 VAL B 153 -65.93 -102.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2041 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A2065 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A2088 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A2139 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A2148 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B2071 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B2103 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B2118 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B2349 DISTANCE = 7.44 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 D-MANNOSE (MAN): OBTAINED FROM SOAKING WITH 1.3 M OF REMARK 600 D-MANNOSE AS CRYOPROTECTANT DBREF 4UT4 A 1 346 UNP H7C745 H7C745_BURPS 1 346 DBREF 4UT4 B 1 346 UNP H7C745 H7C745_BURPS 1 346 SEQADV 4UT4 ALA A 179 UNP H7C745 GLU 179 ENGINEERED MUTATION SEQADV 4UT4 ALA A 180 UNP H7C745 GLU 180 ENGINEERED MUTATION SEQADV 4UT4 ALA A 181 UNP H7C745 GLU 181 ENGINEERED MUTATION SEQADV 4UT4 ALA B 179 UNP H7C745 GLU 179 ENGINEERED MUTATION SEQADV 4UT4 ALA B 180 UNP H7C745 GLU 180 ENGINEERED MUTATION SEQADV 4UT4 ALA B 181 UNP H7C745 GLU 181 ENGINEERED MUTATION SEQRES 1 A 346 MET ASN PRO THR ILE ILE ARG ALA ARG ALA PRO LEU ARG SEQRES 2 A 346 LEU GLY LEU ALA GLY GLY GLY THR ASP VAL ALA PRO TYR SEQRES 3 A 346 ALA ASP THR PHE GLY GLY TYR VAL LEU ASN ALA THR ILE SEQRES 4 A 346 ASP ARG TYR ALA TYR ALA VAL ILE LYS THR LEU THR ILE SEQRES 5 A 346 PRO ALA VAL ARG PHE VAL SER THR ASP GLN GLN VAL GLU SEQRES 6 A 346 LYS HIS GLN LEU ILE SER GLU PRO LEU GLU LEU ASN GLY SEQRES 7 A 346 THR LEU ASN LEU HIS LYS ALA VAL TYR ASN HIS MET ILE SEQRES 8 A 346 ARG ASN TYR ASN HIS GLY LYS PRO ILE ALA LEU GLU LEU SEQRES 9 A 346 SER THR PHE CYS ASP ALA PRO ALA GLY SER GLY LEU GLY SEQRES 10 A 346 SER SER SER THR LEU VAL VAL VAL MET ILE LYS ALA PHE SEQRES 11 A 346 VAL GLU LEU LEU ASN LEU PRO LEU ASP ASP TYR ALA ILE SEQRES 12 A 346 ALA GLN LEU ALA TYR ARG ILE GLU ARG VAL ASP CYS GLY SEQRES 13 A 346 LEU ALA GLY GLY ARG GLN ASP GLN TYR SER ALA THR PHE SEQRES 14 A 346 GLY GLY PHE ASN PHE MET GLU PHE TYR ALA ALA ALA ARG SEQRES 15 A 346 THR ILE VAL ASN PRO LEU ARG ILE LYS ASN TRP VAL LEU SEQRES 16 A 346 CYS GLU LEU GLU ALA SER LEU VAL LEU PHE TYR THR GLY SEQRES 17 A 346 VAL SER ARG GLU SER ALA LYS ILE ILE GLN ASP GLN SER SEQRES 18 A 346 ASP ASN VAL VAL SER HIS LYS THR ALA ALA ILE GLU ALA SEQRES 19 A 346 MET HIS GLY ILE LYS ARG GLU ALA LEU VAL MET LYS GLU SEQRES 20 A 346 ALA LEU LEU LYS GLY ASP PHE LYS ALA PHE VAL ALA SER SEQRES 21 A 346 MET ARG LEU GLY TRP ASP ASN LYS LYS ASN SER ALA ARG SEQRES 22 A 346 THR VAL SER ASN ALA HIS ILE ASP GLU ILE TYR ASP ALA SEQRES 23 A 346 ALA ILE ARG ALA GLY ALA GLN ALA GLY LYS VAL SER GLY SEQRES 24 A 346 ALA GLY GLY GLY GLY PHE MET LEU PHE PHE VAL PRO THR SEQRES 25 A 346 GLU LYS ARG MET ASP LEU ILE ARG THR LEU GLY GLU TYR SEQRES 26 A 346 ASP GLY GLN VAL SER ASN CYS HIS PHE THR LYS ASN GLY SEQRES 27 A 346 THR GLN ALA TRP ARG ILE ALA ASN SEQRES 1 B 346 MET ASN PRO THR ILE ILE ARG ALA ARG ALA PRO LEU ARG SEQRES 2 B 346 LEU GLY LEU ALA GLY GLY GLY THR ASP VAL ALA PRO TYR SEQRES 3 B 346 ALA ASP THR PHE GLY GLY TYR VAL LEU ASN ALA THR ILE SEQRES 4 B 346 ASP ARG TYR ALA TYR ALA VAL ILE LYS THR LEU THR ILE SEQRES 5 B 346 PRO ALA VAL ARG PHE VAL SER THR ASP GLN GLN VAL GLU SEQRES 6 B 346 LYS HIS GLN LEU ILE SER GLU PRO LEU GLU LEU ASN GLY SEQRES 7 B 346 THR LEU ASN LEU HIS LYS ALA VAL TYR ASN HIS MET ILE SEQRES 8 B 346 ARG ASN TYR ASN HIS GLY LYS PRO ILE ALA LEU GLU LEU SEQRES 9 B 346 SER THR PHE CYS ASP ALA PRO ALA GLY SER GLY LEU GLY SEQRES 10 B 346 SER SER SER THR LEU VAL VAL VAL MET ILE LYS ALA PHE SEQRES 11 B 346 VAL GLU LEU LEU ASN LEU PRO LEU ASP ASP TYR ALA ILE SEQRES 12 B 346 ALA GLN LEU ALA TYR ARG ILE GLU ARG VAL ASP CYS GLY SEQRES 13 B 346 LEU ALA GLY GLY ARG GLN ASP GLN TYR SER ALA THR PHE SEQRES 14 B 346 GLY GLY PHE ASN PHE MET GLU PHE TYR ALA ALA ALA ARG SEQRES 15 B 346 THR ILE VAL ASN PRO LEU ARG ILE LYS ASN TRP VAL LEU SEQRES 16 B 346 CYS GLU LEU GLU ALA SER LEU VAL LEU PHE TYR THR GLY SEQRES 17 B 346 VAL SER ARG GLU SER ALA LYS ILE ILE GLN ASP GLN SER SEQRES 18 B 346 ASP ASN VAL VAL SER HIS LYS THR ALA ALA ILE GLU ALA SEQRES 19 B 346 MET HIS GLY ILE LYS ARG GLU ALA LEU VAL MET LYS GLU SEQRES 20 B 346 ALA LEU LEU LYS GLY ASP PHE LYS ALA PHE VAL ALA SER SEQRES 21 B 346 MET ARG LEU GLY TRP ASP ASN LYS LYS ASN SER ALA ARG SEQRES 22 B 346 THR VAL SER ASN ALA HIS ILE ASP GLU ILE TYR ASP ALA SEQRES 23 B 346 ALA ILE ARG ALA GLY ALA GLN ALA GLY LYS VAL SER GLY SEQRES 24 B 346 ALA GLY GLY GLY GLY PHE MET LEU PHE PHE VAL PRO THR SEQRES 25 B 346 GLU LYS ARG MET ASP LEU ILE ARG THR LEU GLY GLU TYR SEQRES 26 B 346 ASP GLY GLN VAL SER ASN CYS HIS PHE THR LYS ASN GLY SEQRES 27 B 346 THR GLN ALA TRP ARG ILE ALA ASN HET MAN A 400 12 HET CL A 401 1 HET CL A 402 1 HET CL A 403 1 HET CL A 404 1 HET MAN B 400 12 HET CL B 401 1 HET CL B 402 1 HET CL B 403 1 HET CL B 404 1 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CL CHLORIDE ION HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 MAN 2(C6 H12 O6) FORMUL 4 CL 8(CL 1-) FORMUL 13 HOH *797(H2 O) HELIX 1 1 VAL A 23 GLY A 31 1 9 HELIX 2 2 LEU A 80 ASN A 95 1 16 HELIX 3 3 GLY A 117 ASN A 135 1 19 HELIX 4 4 ASP A 139 VAL A 153 1 15 HELIX 5 5 ARG A 161 GLY A 170 1 10 HELIX 6 6 LYS A 191 SER A 201 1 11 HELIX 7 7 GLU A 212 SER A 226 1 15 HELIX 8 8 LYS A 228 LYS A 251 1 24 HELIX 9 9 ASP A 253 ALA A 272 1 20 HELIX 10 10 ASN A 277 GLY A 291 1 15 HELIX 11 11 PRO A 311 GLU A 313 5 3 HELIX 12 12 LYS A 314 GLU A 324 1 11 HELIX 13 13 VAL B 23 GLY B 31 1 9 HELIX 14 14 LEU B 80 ASN B 95 1 16 HELIX 15 15 GLY B 117 ASN B 135 1 19 HELIX 16 16 ASP B 139 VAL B 153 1 15 HELIX 17 17 ARG B 161 GLY B 170 1 10 HELIX 18 18 LYS B 191 SER B 201 1 11 HELIX 19 19 GLU B 212 SER B 226 1 15 HELIX 20 20 LYS B 228 LYS B 251 1 24 HELIX 21 21 ASP B 253 ALA B 272 1 20 HELIX 22 22 ASN B 277 GLY B 291 1 15 HELIX 23 23 PRO B 311 GLU B 313 5 3 HELIX 24 24 LYS B 314 GLU B 324 1 11 SHEET 1 AA 6 VAL A 64 GLN A 68 0 SHEET 2 AA 6 ALA A 54 VAL A 58 -1 O VAL A 55 N HIS A 67 SHEET 3 AA 6 LEU A 102 CYS A 108 1 O LEU A 102 N ARG A 56 SHEET 4 AA 6 GLY A 32 THR A 49 -1 O TYR A 44 N PHE A 107 SHEET 5 AA 6 PHE A 172 PHE A 177 1 O ASN A 173 N ASN A 36 SHEET 6 AA 6 THR A 183 PRO A 187 1 O ILE A 184 N GLU A 176 SHEET 1 AB 6 VAL A 64 GLN A 68 0 SHEET 2 AB 6 ALA A 54 VAL A 58 -1 O VAL A 55 N HIS A 67 SHEET 3 AB 6 LEU A 102 CYS A 108 1 O LEU A 102 N ARG A 56 SHEET 4 AB 6 GLY A 32 THR A 49 -1 O TYR A 44 N PHE A 107 SHEET 5 AB 6 ILE A 5 ALA A 17 -1 O ILE A 6 N ILE A 47 SHEET 6 AB 6 GLN A 340 ALA A 345 -1 O GLN A 340 N ARG A 9 SHEET 1 AC 4 ALA A 294 VAL A 297 0 SHEET 2 AC 4 PHE A 305 PHE A 309 -1 O LEU A 307 N LYS A 296 SHEET 3 AC 4 LEU A 202 TYR A 206 -1 O VAL A 203 N PHE A 308 SHEET 4 AC 4 GLN A 328 ASN A 331 -1 O GLN A 328 N TYR A 206 SHEET 1 BA 6 VAL B 64 GLN B 68 0 SHEET 2 BA 6 ALA B 54 VAL B 58 -1 O VAL B 55 N HIS B 67 SHEET 3 BA 6 LEU B 102 CYS B 108 1 O LEU B 102 N ARG B 56 SHEET 4 BA 6 GLY B 32 THR B 49 -1 O TYR B 44 N PHE B 107 SHEET 5 BA 6 PHE B 172 TYR B 178 -1 O ASN B 173 N ASN B 36 SHEET 6 BA 6 ARG B 182 PRO B 187 -1 O ARG B 182 N TYR B 178 SHEET 1 BB 6 VAL B 64 GLN B 68 0 SHEET 2 BB 6 ALA B 54 VAL B 58 -1 O VAL B 55 N HIS B 67 SHEET 3 BB 6 LEU B 102 CYS B 108 1 O LEU B 102 N ARG B 56 SHEET 4 BB 6 GLY B 32 THR B 49 -1 O TYR B 44 N PHE B 107 SHEET 5 BB 6 ILE B 5 ALA B 17 -1 O ILE B 6 N ILE B 47 SHEET 6 BB 6 GLN B 340 ALA B 345 -1 O GLN B 340 N ARG B 9 SHEET 1 BC 4 ALA B 294 VAL B 297 0 SHEET 2 BC 4 PHE B 305 PHE B 309 -1 O LEU B 307 N LYS B 296 SHEET 3 BC 4 LEU B 202 TYR B 206 -1 O VAL B 203 N PHE B 308 SHEET 4 BC 4 GLN B 328 ASN B 331 -1 O GLN B 328 N TYR B 206 CRYST1 101.100 116.330 168.090 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009891 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008596 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005949 0.00000 MTRIX1 1 -0.999990 -0.000230 0.003360 -0.13440 1 MTRIX2 1 0.000230 -1.000000 0.000740 -40.06847 1 MTRIX3 1 0.003360 0.000740 0.999990 0.01523 1