HEADER IMMUNE SYSTEM 18-JUL-14 4UT7 TITLE CRYSTAL STRUCTURE OF THE SCFV FRAGMENT OF THE BROADLY NEUTRALIZING TITLE 2 HUMAN ANTIBODY EDE2 A11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11; COMPND 3 CHAIN: H; COMPND 4 FRAGMENT: SCFV HEAVY CHAIN DOMAIN, RESIDUES 1-130; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11; COMPND 8 CHAIN: L; COMPND 9 FRAGMENT: SCFV LIGHT CHAIN DOMAIN, RESIDUES 1-147; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: B LYMPHOCYTE; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SCHNEIDER 2; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMT/BIP/V5-HIS; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 CELL: B LYMPHOCYTE; SOURCE 16 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 17 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 19 EXPRESSION_SYSTEM_CELL_LINE: SCHNEIDER 2; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PMT/BIP/V5-HIS KEYWDS IMMUNE SYSTEM, BROADLY NEUTRALIZING ANTIBODY, IMMUNE SYSTEM-VIRAL KEYWDS 2 PROTEIN COMPLEX, VIRAL PROTEIN, MEMBRANE FUSION, CLASS 2 FUSION KEYWDS 3 PROTEIN, DENGUE VIRUS, SCFV FRAGMENT EXPDTA X-RAY DIFFRACTION AUTHOR A.ROUVINSKI,P.GUARDADO-CALVO,G.BARBA-SPAETH,S.DUQUERROY,M.C.VANEY, AUTHOR 2 F.A.REY REVDAT 3 01-MAY-24 4UT7 1 REMARK REVDAT 2 15-APR-15 4UT7 1 JRNL REVDAT 1 28-JAN-15 4UT7 0 JRNL AUTH A.ROUVINSKI,P.GUARDADO-CALVO,G.BARBA-SPAETH,S.DUQUERROY, JRNL AUTH 2 M.VANEY,C.M.KIKUTI,M.E.NAVARRO SANCHEZ,W.DEJNIRATTISAI, JRNL AUTH 3 W.WONGWIWAT,A.HAOUZ,C.GIRARD-BLANC,S.PETRES,W.E.SHEPARD, JRNL AUTH 4 P.DESPRES,F.ARENZANA-SEISDEDOS,P.DUSSART,J.MONGKOLSAPAYA, JRNL AUTH 5 G.R.SCREATON,F.A.REY JRNL TITL RECOGNITION DETERMINANTS OF BROADLY NEUTRALIZING HUMAN JRNL TITL 2 ANTIBODIES AGAINST DENGUE VIRUSES. JRNL REF NATURE V. 520 109 2015 JRNL REFN ISSN 0028-0836 JRNL PMID 25581790 JRNL DOI 10.1038/NATURE14130 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.DEJNIRATTISAI,W.WONGWIWAT,S.SUPASA,X.ZHANG,X.DAI, REMARK 1 AUTH 2 A.ROUVINSKY,A.JUMNAINSONG,C.EDWARDS,N.T.H.QUYEN, REMARK 1 AUTH 3 T.DUANGCHINDA,J.M.GRIMES,W.TSAI,C.LAI,W.WANG,P.MALASIT, REMARK 1 AUTH 4 J.FARRAR,C.P.SIMMONS,Z.H.ZHOU,F.A.REY,J.MONGKOLSAPAYA, REMARK 1 AUTH 5 G.R.SCREATON REMARK 1 TITL A NEW CLASS OF HIGHLY POTENT, BROADLY NEUTRALIZING REMARK 1 TITL 2 ANTIBODIES ISOLATED FROM VIREMIC PATIENTS INFECTED WITH REMARK 1 TITL 3 DENGUE VIRUS. REMARK 1 REF NAT.IMMUNOL. V. 16 170 2015 REMARK 1 REFN ISSN 1529-2908 REMARK 1 PMID 25501631 REMARK 1 DOI 10.1038/NI.3058 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 28441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1428 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.92 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2609 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2301 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2477 REMARK 3 BIN R VALUE (WORKING SET) : 0.2281 REMARK 3 BIN FREE R VALUE : 0.2677 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.06 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 132 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1927 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.85400 REMARK 3 B22 (A**2) : 5.21990 REMARK 3 B33 (A**2) : -3.36590 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 9.94520 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.178 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.096 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.093 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.092 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.091 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2064 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2818 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 680 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 37 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 325 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2064 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 263 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2543 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.95 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.03 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN H REMARK 3 ORIGIN FOR THE GROUP (A): -22.7367 -2.1864 11.1387 REMARK 3 T TENSOR REMARK 3 T11: -0.0020 T22: -0.0459 REMARK 3 T33: -0.0094 T12: 0.0005 REMARK 3 T13: -0.0241 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.6503 L22: 0.7229 REMARK 3 L33: 0.5615 L12: 0.1881 REMARK 3 L13: 0.0998 L23: 0.1255 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.0365 S13: -0.0178 REMARK 3 S21: 0.0064 S22: -0.0299 S23: 0.0210 REMARK 3 S31: 0.0167 S32: 0.0197 S33: 0.0346 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN L REMARK 3 ORIGIN FOR THE GROUP (A): -13.9798 3.9072 28.9708 REMARK 3 T TENSOR REMARK 3 T11: -0.0014 T22: -0.0169 REMARK 3 T33: -0.0298 T12: -0.0135 REMARK 3 T13: -0.0147 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.7979 L22: 0.7994 REMARK 3 L33: 1.7539 L12: 0.0375 REMARK 3 L13: -0.1543 L23: -0.0759 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: -0.0960 S13: 0.0259 REMARK 3 S21: 0.0489 S22: 0.0041 S23: 0.0224 REMARK 3 S31: 0.0434 S32: -0.0420 S33: -0.0008 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UT7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1290061241. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : KIRKPATRICK-BAEZ PAIR OF BI REMARK 200 -MORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28835 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: FAB A11 FROM THE COMPLEX DENGUE 2 FAB A11 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES 6.5 25% (V/V) PEG 550 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 31.46000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.83500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 31.46000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.83500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H2074 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU H 1 REMARK 465 SER H 128 REMARK 465 GLY H 129 REMARK 465 GLY H 130 REMARK 465 GLY L -2 REMARK 465 ALA L 109 REMARK 465 ALA L 110 REMARK 465 ASP L 111 REMARK 465 ASP L 112 REMARK 465 ASP L 113 REMARK 465 ASP L 114 REMARK 465 LYS L 115 REMARK 465 ALA L 116 REMARK 465 GLY L 117 REMARK 465 TRP L 118 REMARK 465 SER L 119 REMARK 465 HIS L 120 REMARK 465 PRO L 121 REMARK 465 GLN L 122 REMARK 465 PHE L 123 REMARK 465 GLU L 124 REMARK 465 LYS L 125 REMARK 465 GLY L 126 REMARK 465 GLY L 127 REMARK 465 GLY L 128 REMARK 465 SER L 129 REMARK 465 GLY L 130 REMARK 465 GLY L 131 REMARK 465 GLY L 132 REMARK 465 SER L 133 REMARK 465 GLY L 134 REMARK 465 GLY L 135 REMARK 465 GLY L 136 REMARK 465 SER L 137 REMARK 465 SER L 138 REMARK 465 ALA L 139 REMARK 465 TRP L 140 REMARK 465 SER L 141 REMARK 465 HIS L 142 REMARK 465 PRO L 143 REMARK 465 GLN L 144 REMARK 465 PHE L 145 REMARK 465 GLU L 146 REMARK 465 LYS L 147 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO H 100H 55.83 -93.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR H 100N 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L2011 DISTANCE = 6.43 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UT6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DENGUE 2 VIRUS ENVELOPE GLYCOPROTEIN IN REMARK 900 COMPLEX WITH THE FAB FRAGMENT OF THE BROADLY NEUTRALIZING HUMAN REMARK 900 ANTIBODY EDE2 B7 REMARK 900 RELATED ID: 4UT8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DENGUE 4 VIRUS ENVELOPE GLYCOPROTEIN DIMER IN REMARK 900 COMPLEX WITH THE SCFV FRAGMENT OF THE BROADLY NEUTRALIZING HUMAN REMARK 900 ANTIBODY EDE1 C10 REMARK 900 RELATED ID: 4UT9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DENGUE 2 VIRUS ENVELOPE GLYCOPROTEIN DIMER IN REMARK 900 COMPLEX WITH THE SCFV FRAGMENT OF THE BROADLY NEUTRALIZING HUMAN REMARK 900 ANTIBODY EDE1 C10 DBREF 4UT7 H 1 130 PDB 4UT7 4UT7 1 130 DBREF 4UT7 L 1 147 PDB 4UT7 4UT7 1 147 SEQADV 4UT7 GLY L -2 PDB 4UT7 EXPRESSION TAG SEQADV 4UT7 ALA L -1 PDB 4UT7 EXPRESSION TAG SEQADV 4UT7 SER L 0 PDB 4UT7 EXPRESSION TAG SEQRES 1 H 150 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL ARG SEQRES 2 H 150 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 150 PHE SER TYR SER ASN HIS TRP MET HIS TRP VAL ARG GLN SEQRES 4 H 150 ALA PRO GLY LYS GLY LEU VAL TRP VAL SER ARG ILE ASN SEQRES 5 H 150 SER ASP GLY SER THR ARG ASN TYR ALA ASP PHE VAL LYS SEQRES 6 H 150 GLY ARG PHE THR ILE SER ARG ASP ASN ALA GLU ASN THR SEQRES 7 H 150 LEU TYR LEU GLU MET ASN SER LEU THR ALA ASP ASP THR SEQRES 8 H 150 ALA VAL TYR TYR CYS VAL ARG ASP GLY VAL ARG PHE TYR SEQRES 9 H 150 TYR ASP SER THR GLY TYR TYR PRO ASP SER PHE PHE LYS SEQRES 10 H 150 TYR GLY MET ASP VAL TRP GLY GLN GLY THR THR VAL THR SEQRES 11 H 150 VAL SER SER GLY THR GLY GLY SER GLY GLY GLY GLY SER SEQRES 12 H 150 GLY GLY GLY GLY SER GLY GLY SEQRES 1 L 153 GLY ALA SER GLN SER VAL LEU THR GLN PRO VAL SER VAL SEQRES 2 L 153 SER GLY SER PRO GLY GLN SER ILE THR ILE SER CYS THR SEQRES 3 L 153 GLY THR SER SER ASN ALA ASP THR TYR ASN LEU VAL SER SEQRES 4 L 153 TRP TYR GLN GLN ARG PRO GLY LYS ALA PRO LYS LEU MET SEQRES 5 L 153 ILE TYR GLU GLY THR LYS ARG PRO SER GLY VAL SER ASN SEQRES 6 L 153 ARG PHE SER ALA SER LYS SER ALA THR ALA ALA SER LEU SEQRES 7 L 153 THR ILE SER GLY LEU GLN PRO GLU ASP GLU ALA ASP TYR SEQRES 8 L 153 TYR CYS CYS SER TYR ALA THR SER ARG THR LEU VAL PHE SEQRES 9 L 153 GLY GLY GLY THR LYS LEU THR VAL VAL ALA ALA ALA ASP SEQRES 10 L 153 ASP ASP ASP LYS ALA GLY TRP SER HIS PRO GLN PHE GLU SEQRES 11 L 153 LYS GLY GLY GLY SER GLY GLY GLY SER GLY GLY GLY SER SEQRES 12 L 153 SER ALA TRP SER HIS PRO GLN PHE GLU LYS FORMUL 3 HOH *213(H2 O) HELIX 1 1 SER H 28 HIS H 32 5 5 HELIX 2 2 ASP H 61 LYS H 64 5 4 HELIX 3 3 THR H 83 THR H 87 5 5 HELIX 4 4 VAL H 97 TYR H 100A 5 5 HELIX 5 5 GLY H 116 GLY H 120 5 5 HELIX 6 6 ASN L 27B LEU L 32 1 7 HELIX 7 7 GLN L 79 GLU L 83 5 5 SHEET 1 HA 4 GLN H 3 SER H 7 0 SHEET 2 HA 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 HA 4 THR H 77 MET H 82 -1 O LEU H 78 N CYS H 22 SHEET 4 HA 4 PHE H 67 ASP H 72 -1 O THR H 68 N GLU H 81 SHEET 1 HB 4 LEU H 11 VAL H 12 0 SHEET 2 HB 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 HB 4 ALA H 88 ARG H 94 -1 O ALA H 88 N VAL H 109 SHEET 4 HB 4 VAL H 102 TRP H 103 -1 O VAL H 102 N ARG H 94 SHEET 1 HC 6 LEU H 11 VAL H 12 0 SHEET 2 HC 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 HC 6 ALA H 88 ARG H 94 -1 O ALA H 88 N VAL H 109 SHEET 4 HC 6 MET H 34 GLN H 39 -1 O HIS H 35 N VAL H 93 SHEET 5 HC 6 LEU H 45 ILE H 51 -1 O VAL H 46 N ARG H 38 SHEET 6 HC 6 ARG H 57 TYR H 59 -1 O ASN H 58 N ARG H 50 SHEET 1 HD 2 VAL H 102 TRP H 103 0 SHEET 2 HD 2 ALA H 88 ARG H 94 -1 N ARG H 94 O VAL H 102 SHEET 1 LA 4 VAL L 3 THR L 5 0 SHEET 2 LA 4 ILE L 19 THR L 26 -1 O THR L 24 N THR L 5 SHEET 3 LA 4 ALA L 70 ILE L 75 -1 O ALA L 71 N CYS L 23 SHEET 4 LA 4 PHE L 62 LYS L 66 -1 O SER L 63 N THR L 74 SHEET 1 LB 4 SER L 9 GLY L 13 0 SHEET 2 LB 4 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 LB 4 ALA L 84 THR L 93 -1 O ALA L 84 N LEU L 104 SHEET 4 LB 4 THR L 95A PHE L 98 1 O THR L 95A N ALA L 92 SHEET 1 LC 5 SER L 9 GLY L 13 0 SHEET 2 LC 5 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 LC 5 ALA L 84 THR L 93 -1 O ALA L 84 N LEU L 104 SHEET 4 LC 5 SER L 34 GLN L 38 -1 O SER L 34 N CYS L 89 SHEET 5 LC 5 LYS L 45 ILE L 48 -1 O LYS L 45 N GLN L 37 SHEET 1 LD 2 THR L 95A PHE L 98 0 SHEET 2 LD 2 ALA L 84 THR L 93 1 O SER L 90 N VAL L 97 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.08 SSBOND 2 CYS L 23 CYS L 88 1555 1555 2.09 CRYST1 62.920 47.670 90.670 90.00 102.39 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015893 0.000000 0.003491 0.00000 SCALE2 0.000000 0.020978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011292 0.00000