HEADER SIGNALING PROTEIN 25-JUL-14 4UUC TITLE CRYSTAL STRUCTURE OF HUMAN ASB11 ANKYRIN REPEAT DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANKYRIN REPEAT AND SOCS BOX PROTEIN 11; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ANKYRIN REPEAT DOMAIN, RESIDUES 64-287; COMPND 5 SYNONYM: ASB-11, ANKYRIN REPEAT AND SOCS BOX CONTAINING 11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.M.PINKAS,C.SANVITALE,T.KRAGH NIELSEN,K.GUO,F.SORRELL,G.BERRIDGE, AUTHOR 2 V.AYINAMPUDI,D.WANG,J.A.NEWMAN,C.TALLANT,A.CHAIKUAD,P.CANNING, AUTHOR 3 J.KOPEC,T.KROJER,M.VOLLMAR,C.K.ALLERSTON,R.CHALK,N.BURGESS-BROWN, AUTHOR 4 F.VON DELFT,C.H.ARROWSMITH,A.EDWARDS,C.BOUNTRA,A.BULLOCK REVDAT 4 10-JAN-24 4UUC 1 REMARK REVDAT 3 24-JAN-18 4UUC 1 JRNL REVDAT 2 13-AUG-14 4UUC 1 ATOM REVDAT 1 06-AUG-14 4UUC 0 JRNL AUTH D.M.PINKAS,C.SANVITALE,T.KRAGH NIELSEN,K.GUO,F.SORRELL, JRNL AUTH 2 G.BERRIDGE,V.AYINAMPUDI,D.WANG,J.A.NEWMAN,C.TALLANT, JRNL AUTH 3 A.CHAIKUAD,P.CANNING,J.KOPEC,T.KROJER,M.VOLLMAR, JRNL AUTH 4 C.K.ALLERSTON,R.CHALK,N.BURGESS-BROWN,F.VON DELFT, JRNL AUTH 5 C.H.ARROWSMITH,A.EDWARDS,C.BOUNTRA,A.BULLOCK JRNL TITL CRYSTAL STRUCTURE OF HUMAN ASB11 ANKYRIN REPEAT DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 23735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.3030 - 3.5997 0.99 2961 148 0.1583 0.1834 REMARK 3 2 3.5997 - 2.8572 1.00 2870 146 0.1520 0.2046 REMARK 3 3 2.8572 - 2.4961 1.00 2832 131 0.1452 0.1663 REMARK 3 4 2.4961 - 2.2678 1.00 2817 127 0.1479 0.1959 REMARK 3 5 2.2678 - 2.1053 0.99 2797 159 0.1660 0.2194 REMARK 3 6 2.1053 - 1.9812 1.00 2761 147 0.1841 0.2487 REMARK 3 7 1.9812 - 1.8819 1.00 2771 136 0.2041 0.2451 REMARK 3 8 1.8819 - 1.8000 1.00 2791 141 0.2338 0.2770 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1675 REMARK 3 ANGLE : 0.752 2283 REMARK 3 CHIRALITY : 0.028 274 REMARK 3 PLANARITY : 0.004 300 REMARK 3 DIHEDRAL : 12.926 605 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UUC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1290061360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23795 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 89.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZKJ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 25% PEG3350, REMARK 280 0.1M BIS-TRIS PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.60750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.80150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.18750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.80150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.60750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.18750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 62 REMARK 465 MET A 63 REMARK 465 ALA A 64 REMARK 465 ASP A 65 REMARK 465 LEU A 287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 156 CD CE NZ REMARK 470 GLU A 160 CD OE1 OE2 REMARK 470 LYS A 271 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 195 -12.27 72.19 REMARK 500 TRP A 227 -108.95 47.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2082 DISTANCE = 6.15 ANGSTROMS DBREF 4UUC A 64 287 UNP Q8WXH4 ASB11_HUMAN 64 287 SEQADV 4UUC SER A 62 UNP Q8WXH4 EXPRESSION TAG SEQADV 4UUC MET A 63 UNP Q8WXH4 EXPRESSION TAG SEQRES 1 A 226 SER MET ALA ASP ARG SER PRO LEU HIS GLU ALA ALA ALA SEQRES 2 A 226 GLN GLY ARG LEU LEU ALA LEU LYS THR LEU ILE ALA GLN SEQRES 3 A 226 GLY VAL ASN VAL ASN LEU VAL THR ILE ASN ARG VAL SER SEQRES 4 A 226 SER LEU HIS GLU ALA CYS LEU GLY GLY HIS VAL ALA CYS SEQRES 5 A 226 ALA LYS ALA LEU LEU GLU ASN GLY ALA HIS VAL ASN GLY SEQRES 6 A 226 VAL THR VAL HIS GLY ALA THR PRO LEU PHE ASN ALA CYS SEQRES 7 A 226 CYS SER GLY SER ALA ALA CYS VAL ASN VAL LEU LEU GLU SEQRES 8 A 226 PHE GLY ALA LYS ALA GLN LEU GLU VAL HIS LEU ALA SER SEQRES 9 A 226 PRO ILE HIS GLU ALA VAL LYS ARG GLY HIS ARG GLU CYS SEQRES 10 A 226 MET GLU ILE LEU LEU ALA ASN ASN VAL ASN ILE ASP HIS SEQRES 11 A 226 GLU VAL PRO GLN LEU GLY THR PRO LEU TYR VAL ALA CYS SEQRES 12 A 226 THR TYR GLN ARG VAL ASP CYS VAL LYS LYS LEU LEU GLU SEQRES 13 A 226 LEU GLY ALA SER VAL ASP HIS GLY GLN TRP LEU ASP THR SEQRES 14 A 226 PRO LEU HIS ALA ALA ALA ARG GLN SER ASN VAL GLU VAL SEQRES 15 A 226 ILE HIS LEU LEU THR ASP TYR GLY ALA ASN LEU LYS ARG SEQRES 16 A 226 ARG ASN ALA GLN GLY LYS SER ALA LEU ASP LEU ALA ALA SEQRES 17 A 226 PRO LYS SER SER VAL GLU GLN ALA LEU LEU LEU ARG GLU SEQRES 18 A 226 GLY PRO PRO ALA LEU FORMUL 2 HOH *243(H2 O) HELIX 1 1 SER A 67 GLY A 76 1 10 HELIX 2 2 ARG A 77 GLY A 88 1 12 HELIX 3 3 SER A 100 GLY A 108 1 9 HELIX 4 4 HIS A 110 ASN A 120 1 11 HELIX 5 5 THR A 133 GLY A 142 1 10 HELIX 6 6 SER A 143 PHE A 153 1 11 HELIX 7 7 SER A 165 ARG A 173 1 9 HELIX 8 8 HIS A 175 ASN A 185 1 11 HELIX 9 9 THR A 198 TYR A 206 1 9 HELIX 10 10 ARG A 208 LEU A 218 1 11 HELIX 11 11 THR A 230 ARG A 237 1 8 HELIX 12 12 ASN A 240 TYR A 250 1 11 HELIX 13 13 SER A 263 ALA A 268 1 6 HELIX 14 14 SER A 272 GLU A 282 1 11 CRYST1 43.215 64.375 89.603 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023140 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011160 0.00000