HEADER TRANSCRIPTION 31-JUL-14 4UUS TITLE CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE UBDA MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOTIC PROTEIN ULTRABITHORAX; COMPND 3 CHAIN: A, E; COMPND 4 FRAGMENT: HOMEODOMAIN AND UBDA, RESIDUES 292-367; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HOMEOTIC PROTEIN EXTRADENTICLE; COMPND 9 CHAIN: B, F; COMPND 10 FRAGMENT: HOMEODOMAIN RESIDUES 238-312; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*C)-3'; COMPND 14 CHAIN: C, G; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: UBX-EXD CONSENSUS BINDING SITE; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: 5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*G)-3'; COMPND 19 CHAIN: D, H; COMPND 20 ENGINEERED: YES; COMPND 21 OTHER_DETAILS: UBX-EXD CONSENSUS BINDING SITE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: UBX1 PETG20A; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PETG20A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 13 ORGANISM_COMMON: FRUIT FLY; SOURCE 14 ORGANISM_TAXID: 7227; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR: PETG20A; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: EXD2 PETG20A; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 24 ORGANISM_COMMON: FRUIT FLY; SOURCE 25 ORGANISM_TAXID: 7227; SOURCE 26 MOL_ID: 4; SOURCE 27 SYNTHETIC: YES; SOURCE 28 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 29 ORGANISM_COMMON: FRUIT FLY; SOURCE 30 ORGANISM_TAXID: 7227 KEYWDS TRANSCRIPTION, HOMEODOMAIN, HOX PROTEIN, PBC PROTEIN, DNA PROTEIN KEYWDS 2 COMPLEX, TRANSCRIPTION FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR N.FOOS,M.J.MATE,M.ORTIZ-LOMBARDIA REVDAT 2 10-JAN-24 4UUS 1 REMARK REVDAT 1 18-FEB-15 4UUS 0 JRNL AUTH N.FOOS,C.MAUREL-ZAFFRAN,M.J.MATE,R.VINCENTELLI,M.HAINAUT, JRNL AUTH 2 H.BERENGER,J.PRADEL,A.J.SAURIN,M.ORTIZ-LOMBARDIA,Y.GRABA JRNL TITL A FLEXIBLE EXTENSION OF THE DROSOPHILA ULTRABITHORAX JRNL TITL 2 HOMEODOMAIN DEFINES A NOVEL HOX/PBC INTERACTION MODE. JRNL REF STRUCTURE V. 23 270 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25651060 JRNL DOI 10.1016/J.STR.2014.12.011 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 18169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 923 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.71 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2941 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2058 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2769 REMARK 3 BIN R VALUE (WORKING SET) : 0.1991 REMARK 3 BIN FREE R VALUE : 0.3113 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.85 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 172 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2274 REMARK 3 NUCLEIC ACID ATOMS : 1218 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39450 REMARK 3 B22 (A**2) : 4.75630 REMARK 3 B33 (A**2) : -5.15080 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.10160 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.360 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3680 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5195 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1583 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 69 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 385 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3680 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 471 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3688 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.25 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.46 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.93 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 23.8212 3.0921 11.4947 REMARK 3 T TENSOR REMARK 3 T11: -0.1390 T22: -0.1135 REMARK 3 T33: -0.0596 T12: 0.0193 REMARK 3 T13: 0.0129 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 5.6455 L22: 1.8986 REMARK 3 L33: 3.5660 L12: 0.7365 REMARK 3 L13: 0.4209 L23: -0.1860 REMARK 3 S TENSOR REMARK 3 S11: 0.1284 S12: -0.2055 S13: -0.1441 REMARK 3 S21: -0.0111 S22: -0.1440 S23: -0.0379 REMARK 3 S31: 0.0983 S32: 0.1267 S33: 0.0157 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 9.5764 -15.3594 -8.6482 REMARK 3 T TENSOR REMARK 3 T11: -0.0916 T22: -0.0925 REMARK 3 T33: -0.1055 T12: -0.0454 REMARK 3 T13: -0.0627 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.3627 L22: 4.0499 REMARK 3 L33: 7.0912 L12: 1.2350 REMARK 3 L13: 1.8201 L23: 1.2198 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: -0.1725 S13: -0.0099 REMARK 3 S21: 0.6078 S22: -0.1869 S23: 0.0314 REMARK 3 S31: 0.4363 S32: -0.4882 S33: 0.1616 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 21.8112 -1.5202 0.0287 REMARK 3 T TENSOR REMARK 3 T11: -0.1424 T22: -0.2074 REMARK 3 T33: -0.1491 T12: 0.0141 REMARK 3 T13: -0.0241 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 3.9107 L22: 4.7691 REMARK 3 L33: 9.8408 L12: 0.5416 REMARK 3 L13: 1.7981 L23: 0.6788 REMARK 3 S TENSOR REMARK 3 S11: 0.1088 S12: 0.0243 S13: 0.0108 REMARK 3 S21: 0.0633 S22: -0.1643 S23: -0.2128 REMARK 3 S31: 0.1922 S32: 0.2497 S33: 0.0555 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 20.9814 -7.6985 -0.5875 REMARK 3 T TENSOR REMARK 3 T11: -0.0273 T22: -0.2838 REMARK 3 T33: -0.2077 T12: 0.0617 REMARK 3 T13: 0.0377 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 5.8234 L22: 5.0478 REMARK 3 L33: 8.3904 L12: -0.1636 REMARK 3 L13: 3.3402 L23: -0.6680 REMARK 3 S TENSOR REMARK 3 S11: 0.3788 S12: 0.1607 S13: -0.2851 REMARK 3 S21: -0.3039 S22: -0.3380 S23: -0.2878 REMARK 3 S31: 0.7321 S32: 0.3610 S33: -0.0408 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): 3.1897 -21.8297 -24.4347 REMARK 3 T TENSOR REMARK 3 T11: -0.1545 T22: -0.1762 REMARK 3 T33: 0.0077 T12: 0.0070 REMARK 3 T13: 0.0576 T23: 0.0754 REMARK 3 L TENSOR REMARK 3 L11: 8.1727 L22: 2.5083 REMARK 3 L33: 4.3678 L12: 1.9707 REMARK 3 L13: 1.4417 L23: 0.1372 REMARK 3 S TENSOR REMARK 3 S11: 0.1295 S12: -0.0459 S13: -0.2654 REMARK 3 S21: 0.0734 S22: 0.1418 S23: 0.2385 REMARK 3 S31: 0.2139 S32: -0.1376 S33: -0.2713 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): 20.9143 -4.4340 -42.0984 REMARK 3 T TENSOR REMARK 3 T11: -0.1555 T22: 0.0028 REMARK 3 T33: -0.0069 T12: 0.0430 REMARK 3 T13: 0.0247 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 1.2695 L22: 3.9398 REMARK 3 L33: 4.3014 L12: 1.2745 REMARK 3 L13: -1.3367 L23: -1.8064 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: -0.0808 S13: -0.1384 REMARK 3 S21: -0.1485 S22: -0.2128 S23: -0.2253 REMARK 3 S31: 0.1094 S32: 0.5485 S33: 0.1730 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN G REMARK 3 ORIGIN FOR THE GROUP (A): 6.4602 -18.0648 -35.4671 REMARK 3 T TENSOR REMARK 3 T11: -0.2126 T22: -0.1867 REMARK 3 T33: 0.0281 T12: -0.0460 REMARK 3 T13: -0.0329 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 3.8084 L22: 6.7844 REMARK 3 L33: 5.5994 L12: -0.1086 REMARK 3 L13: -2.0052 L23: -2.4535 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: 0.0765 S13: -0.5812 REMARK 3 S21: -0.3800 S22: -0.1067 S23: 0.0385 REMARK 3 S31: 0.3246 S32: -0.1556 S33: 0.1080 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN H REMARK 3 ORIGIN FOR THE GROUP (A): 7.3662 -12.1345 -36.4467 REMARK 3 T TENSOR REMARK 3 T11: -0.1125 T22: -0.1827 REMARK 3 T33: -0.0992 T12: 0.0582 REMARK 3 T13: -0.0180 T23: 0.0604 REMARK 3 L TENSOR REMARK 3 L11: 5.1477 L22: 6.8617 REMARK 3 L33: 3.5623 L12: 0.9495 REMARK 3 L13: -1.7041 L23: -2.7158 REMARK 3 S TENSOR REMARK 3 S11: 0.0294 S12: 0.3157 S13: -0.1199 REMARK 3 S21: -0.4927 S22: -0.0681 S23: 0.2902 REMARK 3 S31: 0.2226 S32: -0.2632 S33: 0.0388 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UUS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1290061418. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18169 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 38.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1B8I REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMONIUM SULFATE, 0.1 M TRI-SODIUM REMARK 280 -CITRATE PH 4.5, 4% P4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.96000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ASN A -2 REMARK 465 GLY A -1 REMARK 465 LEU A 0 REMARK 465 ARG A 1 REMARK 465 ARG A 2 REMARK 465 ARG A 3 REMARK 465 LYS A 71 REMARK 465 GLN A 72 REMARK 465 ALA A 73 REMARK 465 GLY B 0 REMARK 465 ALA B 1 REMARK 465 ARG B 2 REMARK 465 ARG B 3 REMARK 465 LYS B 4 REMARK 465 ARG B 5 REMARK 465 ARG B 6 REMARK 465 GLY E -3 REMARK 465 ASN E -2 REMARK 465 GLY E -1 REMARK 465 LEU E 0 REMARK 465 ARG E 1 REMARK 465 ARG E 2 REMARK 465 ARG E 3 REMARK 465 GLN E 69 REMARK 465 GLU E 70 REMARK 465 LYS E 71 REMARK 465 GLN E 72 REMARK 465 ALA E 73 REMARK 465 GLY F 0 REMARK 465 ALA F 1 REMARK 465 ARG F 2 REMARK 465 ARG F 3 REMARK 465 LYS F 4 REMARK 465 ARG F 5 REMARK 465 ARG F 6 REMARK 465 ASN F 7 REMARK 465 ALA F 71 REMARK 465 ALA F 72 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 1 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC C 3 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC C 6 C3' - O3' - P ANGL. DEV. = 8.6 DEGREES REMARK 500 DT C 8 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA C 10 C3' - O3' - P ANGL. DEV. = 9.7 DEGREES REMARK 500 DT C 12 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT C 12 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DA C 14 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DC C 15 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA D 16 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA D 16 C3' - O3' - P ANGL. DEV. = 8.4 DEGREES REMARK 500 DG D 18 C3' - O3' - P ANGL. DEV. = 7.9 DEGREES REMARK 500 DG D 20 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT D 22 C3' - O3' - P ANGL. DEV. = 8.6 DEGREES REMARK 500 DT D 23 C3' - O3' - P ANGL. DEV. = 9.0 DEGREES REMARK 500 DG D 27 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DC D 29 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG G 1 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC G 3 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG G 4 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA G 7 C3' - O3' - P ANGL. DEV. = 7.8 DEGREES REMARK 500 DT G 8 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT G 8 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DA G 10 C3' - O3' - P ANGL. DEV. = 9.0 DEGREES REMARK 500 DT G 12 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT G 12 C3' - O3' - P ANGL. DEV. = 10.1 DEGREES REMARK 500 DA G 14 C3' - O3' - P ANGL. DEV. = 8.3 DEGREES REMARK 500 DC G 15 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA H 16 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA H 16 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES REMARK 500 DG H 18 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DG H 20 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DT H 23 C3' - O3' - P ANGL. DEV. = 8.0 DEGREES REMARK 500 DT H 24 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT H 26 C6 - C5 - C7 ANGL. DEV. = -3.6 DEGREES REMARK 500 DG H 27 C3' - O3' - P ANGL. DEV. = 7.2 DEGREES REMARK 500 DG H 28 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG H 28 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DC H 29 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 24 49.88 -82.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UUT RELATED DB: PDB REMARK 900 CRISTAL STRUCTURE OF THE ULTRABITHORAX PROTEIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST G FROM FUSION TAG AFTER CLEAVAGE DBREF 4UUS A -2 73 UNP P83949 UBX_DROME 292 367 DBREF 4UUS B 1 72 UNP P40427 EXD_DROME 238 312 DBREF 4UUS E -2 73 UNP P83949 UBX_DROME 292 367 DBREF 4UUS F 1 72 UNP P40427 EXD_DROME 238 312 DBREF 4UUS C 1 15 PDB 4UUS 4UUS 1 15 DBREF 4UUS D 16 30 PDB 4UUS 4UUS 16 30 DBREF 4UUS G 1 15 PDB 4UUS 4UUS 1 15 DBREF 4UUS H 16 30 PDB 4UUS 4UUS 16 30 SEQADV 4UUS GLY A -3 UNP P83949 EXPRESSION TAG SEQADV 4UUS SER A 39 UNP P83949 CYS 333 ENGINEERED MUTATION SEQADV 4UUS GLY B 0 UNP P40427 EXPRESSION TAG SEQADV 4UUS GLY E -3 UNP P83949 EXPRESSION TAG SEQADV 4UUS SER E 39 UNP P83949 CYS 333 ENGINEERED MUTATION SEQADV 4UUS GLY F 0 UNP P40427 EXPRESSION TAG SEQRES 1 A 77 GLY ASN GLY LEU ARG ARG ARG GLY ARG GLN THR TYR THR SEQRES 2 A 77 ARG TYR GLN THR LEU GLU LEU GLU LYS GLU PHE HIS THR SEQRES 3 A 77 ASN HIS TYR LEU THR ARG ARG ARG ARG ILE GLU MET ALA SEQRES 4 A 77 HIS ALA LEU SER LEU THR GLU ARG GLN ILE LYS ILE TRP SEQRES 5 A 77 PHE GLN ASN ARG ARG MET LYS LEU LYS LYS GLU ILE GLN SEQRES 6 A 77 ALA ILE LYS GLU LEU ASN GLU GLN GLU LYS GLN ALA SEQRES 1 B 76 GLY ALA ARG ARG LYS ARG ARG ASN PHE SER LYS GLN ALA SEQRES 2 B 76 SER GLU ILE LEU ASN GLU TYR PHE TYR SER HIS LEU SER SEQRES 3 B 76 ASN PRO TYR PRO SER GLU GLU ALA LYS GLU GLU LEU ALA SEQRES 4 B 76 ARG LYS CYS GLY ILE THR VAL SER GLN VAL SER ASN TRP SEQRES 5 B 76 PHE GLY ASN LYS ARG ILE ARG TYR LYS LYS ASN ILE GLY SEQRES 6 B 76 LYS ALA GLN GLU GLU ALA ASN LEU TYR ALA ALA SEQRES 1 C 15 DG DT DC DG DC DC DA DT DA DA DA DT DC SEQRES 2 C 15 DA DC SEQRES 1 D 15 DA DC DG DT DG DA DT DT DT DA DT DG DG SEQRES 2 D 15 DC DG SEQRES 1 E 77 GLY ASN GLY LEU ARG ARG ARG GLY ARG GLN THR TYR THR SEQRES 2 E 77 ARG TYR GLN THR LEU GLU LEU GLU LYS GLU PHE HIS THR SEQRES 3 E 77 ASN HIS TYR LEU THR ARG ARG ARG ARG ILE GLU MET ALA SEQRES 4 E 77 HIS ALA LEU SER LEU THR GLU ARG GLN ILE LYS ILE TRP SEQRES 5 E 77 PHE GLN ASN ARG ARG MET LYS LEU LYS LYS GLU ILE GLN SEQRES 6 E 77 ALA ILE LYS GLU LEU ASN GLU GLN GLU LYS GLN ALA SEQRES 1 F 76 GLY ALA ARG ARG LYS ARG ARG ASN PHE SER LYS GLN ALA SEQRES 2 F 76 SER GLU ILE LEU ASN GLU TYR PHE TYR SER HIS LEU SER SEQRES 3 F 76 ASN PRO TYR PRO SER GLU GLU ALA LYS GLU GLU LEU ALA SEQRES 4 F 76 ARG LYS CYS GLY ILE THR VAL SER GLN VAL SER ASN TRP SEQRES 5 F 76 PHE GLY ASN LYS ARG ILE ARG TYR LYS LYS ASN ILE GLY SEQRES 6 F 76 LYS ALA GLN GLU GLU ALA ASN LEU TYR ALA ALA SEQRES 1 G 15 DG DT DC DG DC DC DA DT DA DA DA DT DC SEQRES 2 G 15 DA DC SEQRES 1 H 15 DA DC DG DT DG DA DT DT DT DA DT DG DG SEQRES 2 H 15 DC DG FORMUL 9 HOH *160(H2 O) HELIX 1 1 THR A 9 ASN A 23 1 15 HELIX 2 2 THR A 27 SER A 39 1 13 HELIX 3 3 THR A 41 GLU A 70 1 30 HELIX 4 4 SER B 9 HIS B 23 1 15 HELIX 5 5 SER B 27 GLY B 39 1 13 HELIX 6 6 THR B 41 TYR B 56 1 16 HELIX 7 7 ASN B 59 ALA B 71 1 13 HELIX 8 8 THR E 9 ASN E 23 1 15 HELIX 9 9 THR E 27 SER E 39 1 13 HELIX 10 10 THR E 41 GLU E 65 1 25 HELIX 11 11 SER F 9 HIS F 23 1 15 HELIX 12 12 SER F 27 GLY F 39 1 13 HELIX 13 13 THR F 41 ASN F 59 1 19 HELIX 14 14 ASN F 59 ALA F 67 1 9 CRYST1 42.670 95.920 69.820 90.00 99.34 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023436 0.000000 0.003855 0.00000 SCALE2 0.000000 0.010425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014515 0.00000