HEADER TRANSPORT PROTEIN 01-AUG-14 4UUY TITLE STRUCTURAL IDENTIFICATION OF THE VPS18 BETA-PROPELLER REVEALS A TITLE 2 CRITICAL ROLE IN THE HOPS COMPLEX STABILITY AND FUNCTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR MEMBRANE PROTEIN PEP3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BETA-PROPELLER, RESIDUES 2-348; COMPND 5 SYNONYM: CARBOXYPEPTIDASE Y-DEFICIENT PROTEIN 3, VACUOLAR COMPND 6 MORPHOGENESIS PROTEIN 8, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN COMPND 7 18, VACUOLAR PROTEIN-TARGETING PROTEIN 18, VPS18; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQLINKH KEYWDS TRANSPORT PROTEIN, HOPS, MEMBRANE FUSION, VACUOLE, ENDOSOME EXPDTA X-RAY DIFFRACTION AUTHOR H.BEHRMANN,U.GOHLKE,U.HEINEMANN REVDAT 3 08-MAY-24 4UUY 1 REMARK REVDAT 2 17-DEC-14 4UUY 1 JRNL REVDAT 1 29-OCT-14 4UUY 0 JRNL AUTH H.BEHRMANN,A.LURICK,A.KUHLEE,H.K.BALDERHAAR,C.BROCKER, JRNL AUTH 2 D.KUMMEL,S.ENGELBRECHT-VANDRE,U.GOHLKE,S.RAUNSER, JRNL AUTH 3 U.HEINEMANN,C.UNGERMANN JRNL TITL STRUCTURAL IDENTIFICATION OF THE VPS18 BETA-PROPELLER JRNL TITL 2 REVEALS A CRITICAL ROLE IN THE HOPS COMPLEX STABILITY AND JRNL TITL 3 FUNCTION. JRNL REF J.BIOL.CHEM. V. 289 33503 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25324549 JRNL DOI 10.1074/JBC.M114.602714 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 36420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2648 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2379 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5197 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 207 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.89000 REMARK 3 B22 (A**2) : -0.96000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.276 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.210 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.945 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5426 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5311 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7348 ; 1.344 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12217 ; 0.821 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 647 ; 6.409 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;34.042 ;24.816 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1011 ;14.744 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.685 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 857 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5951 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1243 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2576 ; 1.331 ; 1.762 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2575 ; 1.327 ; 1.761 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3221 ; 2.356 ; 2.626 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2850 ; 1.326 ; 2.005 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 102 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6645 36.9098 7.1405 REMARK 3 T TENSOR REMARK 3 T11: 0.0885 T22: 0.0950 REMARK 3 T33: 0.0845 T12: 0.0085 REMARK 3 T13: 0.0298 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.8839 L22: 2.3807 REMARK 3 L33: 0.9725 L12: 0.7341 REMARK 3 L13: -0.0430 L23: -0.3397 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: 0.1238 S13: 0.1513 REMARK 3 S21: -0.0739 S22: 0.0635 S23: 0.3265 REMARK 3 S31: -0.1329 S32: -0.1194 S33: -0.0706 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 103 A 349 REMARK 3 ORIGIN FOR THE GROUP (A): 23.5918 22.4471 5.1077 REMARK 3 T TENSOR REMARK 3 T11: 0.1517 T22: 0.0971 REMARK 3 T33: 0.0680 T12: 0.0125 REMARK 3 T13: 0.0257 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.0239 L22: 1.4445 REMARK 3 L33: 0.7226 L12: 0.2867 REMARK 3 L13: 0.0809 L23: 0.2579 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: 0.0789 S13: 0.0282 REMARK 3 S21: -0.0940 S22: -0.0080 S23: -0.0366 REMARK 3 S31: 0.0003 S32: -0.0069 S33: -0.0198 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 19 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5600 15.8038 29.7282 REMARK 3 T TENSOR REMARK 3 T11: 0.0592 T22: 0.2962 REMARK 3 T33: 0.3682 T12: -0.0223 REMARK 3 T13: -0.0011 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 6.0103 L22: 11.0885 REMARK 3 L33: 3.3858 L12: 4.8848 REMARK 3 L13: -1.8768 L23: 0.1562 REMARK 3 S TENSOR REMARK 3 S11: -0.2124 S12: 0.5680 S13: -0.4969 REMARK 3 S21: 0.0626 S22: 0.2745 S23: 0.8137 REMARK 3 S31: 0.3065 S32: -0.8263 S33: -0.0622 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 348 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2159 11.8153 33.7397 REMARK 3 T TENSOR REMARK 3 T11: 0.2363 T22: 0.0835 REMARK 3 T33: 0.0233 T12: -0.0057 REMARK 3 T13: 0.0002 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.7734 L22: 1.3804 REMARK 3 L33: 0.8139 L12: -0.0789 REMARK 3 L13: -0.0466 L23: -0.2090 REMARK 3 S TENSOR REMARK 3 S11: 0.0519 S12: -0.0585 S13: -0.0767 REMARK 3 S21: 0.1151 S22: -0.0055 S23: 0.0509 REMARK 3 S31: 0.1066 S32: -0.0496 S33: -0.0465 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 WITH TLS ADDED REMARK 4 REMARK 4 4UUY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1290061426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39106 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 63.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % (W/V) PEG 3350, 0.2 M (NH4)2SO4, REMARK 280 0.1 M BIS-TRIS, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.76700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LYS A 224 REMARK 465 GLN A 225 REMARK 465 MET A 226 REMARK 465 GLU A 227 REMARK 465 LYS A 228 REMARK 465 ASP A 229 REMARK 465 PRO A 230 REMARK 465 ALA A 231 REMARK 465 SER A 232 REMARK 465 ASN A 233 REMARK 465 ASN A 234 REMARK 465 TYR A 253 REMARK 465 GLN A 254 REMARK 465 ASN A 255 REMARK 465 ASP A 256 REMARK 465 LYS A 257 REMARK 465 ASP A 258 REMARK 465 HIS A 259 REMARK 465 PRO A 296 REMARK 465 ARG A 297 REMARK 465 HIS A 298 REMARK 465 GLN A 299 REMARK 465 LEU A 300 REMARK 465 THR A 301 REMARK 465 GLY A 302 REMARK 465 SER A 303 REMARK 465 ASN A 304 REMARK 465 THR A 305 REMARK 465 ASP A 306 REMARK 465 SER A 307 REMARK 465 ASN A 308 REMARK 465 GLY B 1 REMARK 465 LYS B 224 REMARK 465 GLN B 225 REMARK 465 MET B 226 REMARK 465 GLU B 227 REMARK 465 LYS B 228 REMARK 465 ASP B 229 REMARK 465 PRO B 230 REMARK 465 ALA B 231 REMARK 465 SER B 232 REMARK 465 ASN B 233 REMARK 465 ASN B 234 REMARK 465 GLN B 254 REMARK 465 ASN B 255 REMARK 465 ASP B 256 REMARK 465 LYS B 257 REMARK 465 ASP B 258 REMARK 465 HIS B 259 REMARK 465 PRO B 296 REMARK 465 ARG B 297 REMARK 465 HIS B 298 REMARK 465 GLN B 299 REMARK 465 LEU B 300 REMARK 465 THR B 301 REMARK 465 GLY B 302 REMARK 465 SER B 303 REMARK 465 ASN B 304 REMARK 465 THR B 305 REMARK 465 ASP B 306 REMARK 465 SER B 307 REMARK 465 ARG B 349 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 12 78.90 -119.20 REMARK 500 LEU A 15 -62.76 -92.00 REMARK 500 THR A 16 170.91 76.85 REMARK 500 THR A 35 -158.51 -101.41 REMARK 500 LYS A 59 155.65 70.98 REMARK 500 LYS A 165 -120.73 52.16 REMARK 500 VAL A 182 -64.40 -133.12 REMARK 500 HIS A 195 145.27 -175.50 REMARK 500 LYS A 276 -99.49 48.29 REMARK 500 ASN A 286 19.80 -150.46 REMARK 500 LEU B 12 73.66 -117.06 REMARK 500 PHE B 14 -7.05 -56.10 REMARK 500 THR B 16 141.63 86.25 REMARK 500 THR B 35 -159.19 -100.37 REMARK 500 ALA B 48 -29.18 79.70 REMARK 500 LYS B 59 155.61 70.72 REMARK 500 LYS B 165 -120.58 51.50 REMARK 500 VAL B 182 -63.52 -132.27 REMARK 500 HIS B 195 144.98 -175.10 REMARK 500 LYS B 276 -102.13 52.35 REMARK 500 ASN B 286 19.78 -150.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ETHYLENE GLYCOL (EDO): SOLVENT REMARK 600 GLYCEROL (GOL): SOLVENT REMARK 600 SULPHATE (SO4): SOLVENT REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1006 REMARK 999 REMARK 999 SEQUENCE REMARK 999 FRAGMENT AA2-348 DBREF 4UUY A 3 349 UNP P27801 PEP3_YEAST 2 348 DBREF 4UUY B 3 349 UNP P27801 PEP3_YEAST 2 348 SEQADV 4UUY GLY A 1 UNP P27801 EXPRESSION TAG SEQADV 4UUY SER A 2 UNP P27801 EXPRESSION TAG SEQADV 4UUY GLY B 1 UNP P27801 EXPRESSION TAG SEQADV 4UUY SER B 2 UNP P27801 EXPRESSION TAG SEQRES 1 A 349 GLY SER ILE LYS THR ARG ILE GLU GLU VAL GLN LEU GLN SEQRES 2 A 349 PHE LEU THR GLY ASN THR GLU LEU THR HIS LEU LYS VAL SEQRES 3 A 349 SER ASN ASP GLN LEU ILE VAL THR THR GLN ARG THR ILE SEQRES 4 A 349 TYR ARG ILE ASN LEU GLN ASP PRO ALA ILE VAL ASN HIS SEQRES 5 A 349 PHE ASP CYS PRO LEU SER LYS GLU LEU GLU THR ILE MET SEQRES 6 A 349 ASN VAL HIS VAL SER PRO MET GLY SER VAL ILE LEU ILE SEQRES 7 A 349 ARG THR ASN PHE GLY ARG TYR MET LEU LEU LYS ASP GLY SEQRES 8 A 349 GLU PHE THR GLN LEU ASN LYS ILE LYS ASN LEU ASP LEU SEQRES 9 A 349 SER SER LEU HIS TRP ILE ASN GLU THR THR PHE LEU MET SEQRES 10 A 349 GLY ILE LYS LYS THR PRO LYS LEU TYR ARG VAL GLU LEU SEQRES 11 A 349 THR GLY LYS ASP ILE THR THR LYS LEU TRP TYR GLU ASN SEQRES 12 A 349 LYS LYS LEU SER GLY GLY ILE ASP GLY ILE ALA TYR TRP SEQRES 13 A 349 GLU GLY SER LEU LEU LEU THR ILE LYS ASP ASN ILE LEU SEQRES 14 A 349 TYR TRP ARG ASP VAL THR ASN MET LYS PHE PRO LEU VAL SEQRES 15 A 349 LEU PRO ASP GLU SER GLU GLN PHE GLU ARG LEU LYS HIS SEQRES 16 A 349 HIS ALA ILE LYS LYS PHE ASP SER TYR ASN GLY LEU PHE SEQRES 17 A 349 ALA TRP VAL THR SER ASN GLY ILE VAL PHE GLY ASP LEU SEQRES 18 A 349 LYS GLU LYS GLN MET GLU LYS ASP PRO ALA SER ASN ASN SEQRES 19 A 349 PHE GLY LYS PHE LEU SER SER SER LYS VAL LEU LEU ASN SEQRES 20 A 349 PHE GLU LEU PRO ASP TYR GLN ASN ASP LYS ASP HIS LEU SEQRES 21 A 349 ILE LYS ASP ILE VAL LEU THR ALA PHE HIS ILE LEU LEU SEQRES 22 A 349 LEU ARG LYS ASN THR VAL THR MET VAL SER GLN LEU ASN SEQRES 23 A 349 ASN ASP VAL VAL PHE HIS GLU THR ILE PRO ARG HIS GLN SEQRES 24 A 349 LEU THR GLY SER ASN THR ASP SER ASN GLU LYS PHE LEU SEQRES 25 A 349 GLY LEU VAL ARG ASP SER VAL LYS GLU THR PHE TRP CYS SEQRES 26 A 349 PHE SER ASN ILE ASN VAL PHE GLU ILE ILE ILE GLU ASN SEQRES 27 A 349 GLU PRO ASN SER VAL TRP ASN LEU LEU VAL ARG SEQRES 1 B 349 GLY SER ILE LYS THR ARG ILE GLU GLU VAL GLN LEU GLN SEQRES 2 B 349 PHE LEU THR GLY ASN THR GLU LEU THR HIS LEU LYS VAL SEQRES 3 B 349 SER ASN ASP GLN LEU ILE VAL THR THR GLN ARG THR ILE SEQRES 4 B 349 TYR ARG ILE ASN LEU GLN ASP PRO ALA ILE VAL ASN HIS SEQRES 5 B 349 PHE ASP CYS PRO LEU SER LYS GLU LEU GLU THR ILE MET SEQRES 6 B 349 ASN VAL HIS VAL SER PRO MET GLY SER VAL ILE LEU ILE SEQRES 7 B 349 ARG THR ASN PHE GLY ARG TYR MET LEU LEU LYS ASP GLY SEQRES 8 B 349 GLU PHE THR GLN LEU ASN LYS ILE LYS ASN LEU ASP LEU SEQRES 9 B 349 SER SER LEU HIS TRP ILE ASN GLU THR THR PHE LEU MET SEQRES 10 B 349 GLY ILE LYS LYS THR PRO LYS LEU TYR ARG VAL GLU LEU SEQRES 11 B 349 THR GLY LYS ASP ILE THR THR LYS LEU TRP TYR GLU ASN SEQRES 12 B 349 LYS LYS LEU SER GLY GLY ILE ASP GLY ILE ALA TYR TRP SEQRES 13 B 349 GLU GLY SER LEU LEU LEU THR ILE LYS ASP ASN ILE LEU SEQRES 14 B 349 TYR TRP ARG ASP VAL THR ASN MET LYS PHE PRO LEU VAL SEQRES 15 B 349 LEU PRO ASP GLU SER GLU GLN PHE GLU ARG LEU LYS HIS SEQRES 16 B 349 HIS ALA ILE LYS LYS PHE ASP SER TYR ASN GLY LEU PHE SEQRES 17 B 349 ALA TRP VAL THR SER ASN GLY ILE VAL PHE GLY ASP LEU SEQRES 18 B 349 LYS GLU LYS GLN MET GLU LYS ASP PRO ALA SER ASN ASN SEQRES 19 B 349 PHE GLY LYS PHE LEU SER SER SER LYS VAL LEU LEU ASN SEQRES 20 B 349 PHE GLU LEU PRO ASP TYR GLN ASN ASP LYS ASP HIS LEU SEQRES 21 B 349 ILE LYS ASP ILE VAL LEU THR ALA PHE HIS ILE LEU LEU SEQRES 22 B 349 LEU ARG LYS ASN THR VAL THR MET VAL SER GLN LEU ASN SEQRES 23 B 349 ASN ASP VAL VAL PHE HIS GLU THR ILE PRO ARG HIS GLN SEQRES 24 B 349 LEU THR GLY SER ASN THR ASP SER ASN GLU LYS PHE LEU SEQRES 25 B 349 GLY LEU VAL ARG ASP SER VAL LYS GLU THR PHE TRP CYS SEQRES 26 B 349 PHE SER ASN ILE ASN VAL PHE GLU ILE ILE ILE GLU ASN SEQRES 27 B 349 GLU PRO ASN SER VAL TRP ASN LEU LEU VAL ARG HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HET EDO A1004 4 HET EDO A1005 4 HET SO4 B1001 5 HET SO4 B1002 5 HET SO4 B1003 5 HET GOL B1004 6 HET GOL B1005 6 HET EDO B1006 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 6(O4 S 2-) FORMUL 6 EDO 3(C2 H6 O2) FORMUL 11 GOL 2(C3 H8 O3) FORMUL 14 HOH *207(H2 O) HELIX 1 1 ASN A 97 LYS A 100 5 4 HELIX 2 2 PHE A 248 LEU A 250 5 3 HELIX 3 3 ASN A 338 VAL A 348 1 11 HELIX 4 4 LEU B 12 THR B 16 5 5 HELIX 5 5 ASN B 97 LYS B 100 5 4 HELIX 6 6 PHE B 248 LEU B 250 5 3 HELIX 7 7 ASN B 338 VAL B 348 1 11 SHEET 1 AA 4 LYS A 4 VAL A 10 0 SHEET 2 AA 4 VAL A 331 GLU A 337 -1 O VAL A 331 N VAL A 10 SHEET 3 AA 4 THR A 322 SER A 327 -1 O PHE A 323 N ILE A 334 SHEET 4 AA 4 PHE A 311 ASP A 317 -1 N LEU A 312 O PHE A 326 SHEET 1 AB 4 HIS A 23 SER A 27 0 SHEET 2 AB 4 GLN A 30 THR A 34 -1 O GLN A 30 N SER A 27 SHEET 3 AB 4 THR A 38 ASN A 43 -1 O TYR A 40 N VAL A 33 SHEET 4 AB 4 VAL A 50 ASP A 54 -1 O ASN A 51 N ARG A 41 SHEET 1 AC 4 ILE A 64 VAL A 69 0 SHEET 2 AC 4 ILE A 76 THR A 80 -1 O LEU A 77 N HIS A 68 SHEET 3 AC 4 TYR A 85 LYS A 89 -1 O MET A 86 N ILE A 78 SHEET 4 AC 4 GLU A 92 GLN A 95 -1 O GLU A 92 N LYS A 89 SHEET 1 AD 4 LEU A 104 TRP A 109 0 SHEET 2 AD 4 THR A 114 ILE A 119 -1 O LEU A 116 N HIS A 108 SHEET 3 AD 4 LYS A 124 LEU A 130 -1 O LYS A 124 N ILE A 119 SHEET 4 AD 4 ILE A 135 GLU A 142 -1 O THR A 136 N GLU A 129 SHEET 1 AE 4 ILE A 150 TRP A 156 0 SHEET 2 AE 4 SER A 159 ILE A 164 -1 O SER A 159 N TRP A 156 SHEET 3 AE 4 ASN A 167 TRP A 171 -1 O ASN A 167 N ILE A 164 SHEET 4 AE 4 GLU A 186 GLN A 189 -1 O GLU A 186 N TYR A 170 SHEET 1 AF 4 PHE A 201 TYR A 204 0 SHEET 2 AF 4 LEU A 207 VAL A 211 -1 O LEU A 207 N TYR A 204 SHEET 3 AF 4 GLY A 215 ASP A 220 -1 O VAL A 217 N TRP A 210 SHEET 4 AF 4 LYS A 243 LEU A 246 -1 O LYS A 243 N PHE A 218 SHEET 1 AG 4 ILE A 261 LEU A 266 0 SHEET 2 AG 4 HIS A 270 ARG A 275 -1 O LEU A 272 N VAL A 265 SHEET 3 AG 4 THR A 278 SER A 283 -1 O THR A 278 N ARG A 275 SHEET 4 AG 4 VAL A 289 THR A 294 -1 N VAL A 290 O MET A 281 SHEET 1 BA 4 LYS B 4 VAL B 10 0 SHEET 2 BA 4 VAL B 331 GLU B 337 -1 O VAL B 331 N VAL B 10 SHEET 3 BA 4 THR B 322 SER B 327 -1 O PHE B 323 N ILE B 334 SHEET 4 BA 4 PHE B 311 ASP B 317 -1 N LEU B 312 O PHE B 326 SHEET 1 BB 4 HIS B 23 SER B 27 0 SHEET 2 BB 4 GLN B 30 THR B 34 -1 O GLN B 30 N SER B 27 SHEET 3 BB 4 THR B 38 ASN B 43 -1 O TYR B 40 N VAL B 33 SHEET 4 BB 4 VAL B 50 ASP B 54 -1 O ASN B 51 N ARG B 41 SHEET 1 BC 4 ILE B 64 VAL B 69 0 SHEET 2 BC 4 ILE B 76 THR B 80 -1 O LEU B 77 N HIS B 68 SHEET 3 BC 4 TYR B 85 LYS B 89 -1 O MET B 86 N ILE B 78 SHEET 4 BC 4 GLU B 92 GLN B 95 -1 O GLU B 92 N LYS B 89 SHEET 1 BD 4 LEU B 104 TRP B 109 0 SHEET 2 BD 4 THR B 114 ILE B 119 -1 O LEU B 116 N HIS B 108 SHEET 3 BD 4 LYS B 124 LEU B 130 -1 O LYS B 124 N ILE B 119 SHEET 4 BD 4 ILE B 135 GLU B 142 -1 O THR B 136 N GLU B 129 SHEET 1 BE 4 ILE B 150 TRP B 156 0 SHEET 2 BE 4 SER B 159 ILE B 164 -1 O SER B 159 N TRP B 156 SHEET 3 BE 4 ASN B 167 TRP B 171 -1 O ASN B 167 N ILE B 164 SHEET 4 BE 4 GLU B 186 GLN B 189 -1 O GLU B 186 N TYR B 170 SHEET 1 BF 4 PHE B 201 TYR B 204 0 SHEET 2 BF 4 LEU B 207 VAL B 211 -1 O LEU B 207 N TYR B 204 SHEET 3 BF 4 GLY B 215 ASP B 220 -1 O VAL B 217 N TRP B 210 SHEET 4 BF 4 LYS B 243 LEU B 246 -1 O LYS B 243 N PHE B 218 SHEET 1 BG 4 ILE B 261 LEU B 266 0 SHEET 2 BG 4 HIS B 270 ARG B 275 -1 O LEU B 272 N VAL B 265 SHEET 3 BG 4 THR B 278 SER B 283 -1 O THR B 278 N ARG B 275 SHEET 4 BG 4 VAL B 289 THR B 294 -1 N VAL B 290 O MET B 281 CISPEP 1 PHE A 179 PRO A 180 0 1.63 CISPEP 2 PHE B 179 PRO B 180 0 2.16 SITE 1 AC1 5 ASP A 29 LEU A 44 GLN A 45 GLU A 333 SITE 2 AC1 5 GLN B 45 SITE 1 AC2 4 ARG A 127 LYS A 138 TRP A 140 HOH A2057 SITE 1 AC3 4 LYS A 25 HIS A 68 VAL A 69 TRP A 109 SITE 1 AC4 5 THR A 19 THR A 35 GLN A 36 ARG A 37 SITE 2 AC4 5 THR A 38 SITE 1 AC5 2 LEU A 139 GLU A 142 SITE 1 AC6 3 LYS B 25 VAL B 69 TRP B 109 SITE 1 AC7 3 ARG B 127 LYS B 138 TRP B 140 SITE 1 AC8 4 GLN A 45 ASP B 29 GLN B 45 GLU B 333 SITE 1 AC9 5 ASN B 66 HIS B 68 LEU B 104 SER B 105 SITE 2 AC9 5 SER B 106 SITE 1 BC1 7 ASN B 205 ASP B 220 LYS B 222 LEU B 347 SITE 2 BC1 7 HOH B2051 HOH B2057 HOH B2066 SITE 1 BC2 5 THR B 19 THR B 35 GLN B 36 ARG B 37 SITE 2 BC2 5 THR B 38 CRYST1 56.250 77.534 84.508 90.00 98.91 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017778 0.000000 0.002787 0.00000 SCALE2 0.000000 0.012898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011978 0.00000 MTRIX1 1 0.949100 0.004047 0.315100 -5.48000 1 MTRIX2 1 0.005142 -1.000000 -0.002644 39.04000 1 MTRIX3 1 0.315100 0.004130 -0.949100 32.92000 1