HEADER TRANSFERASE 12-AUG-14 4UWI TITLE CRYSTAL STRUCTURE OF ASPERGILLUS FUMIGATUS N-MYRISTOYL TRANSFERASE IN TITLE 2 COMPLEX WITH MYRISTOYL COA AND A PYRAZOLE SULPHONAMIDE LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 86-492; COMPND 5 SYNONYM: MYRISTOYL-COA\:PROTEIN N-MYRISTOYLTRANSFERASE, NMT, PEPTIDE COMPND 6 N-MYRISTOYLTRANSFERASE; COMPND 7 EC: 2.3.1.97; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 3 ORGANISM_TAXID: 746128; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-6P1 KEYWDS TRANSFERASE, DRUG DISCOVERY EXPDTA X-RAY DIFFRACTION AUTHOR D.A.ROBINSON,S.BRAND,N.R.NORCROSS,S.THOMPSON,J.R.HARRISON,V.C.SMITH, AUTHOR 2 L.S.TORRIE,S.P.MCELROY,I.HALLYBURTON,S.NORVAL,L.STOJANOVSKI, AUTHOR 3 F.R.C.SIMEONS,J.A.FREARSON,R.BRENK,A.H.FAIRLAMB,M.A.J.FERGUSON, AUTHOR 4 P.G.WYATT,I.H.GILBERT,K.D.READ REVDAT 4 08-MAY-24 4UWI 1 REMARK REVDAT 3 14-FEB-18 4UWI 1 JRNL REVDAT 2 14-JAN-15 4UWI 1 JRNL REVDAT 1 03-DEC-14 4UWI 0 JRNL AUTH S.BRAND,N.R.NORCROSS,S.THOMPSON,J.R.HARRISON,V.C.SMITH, JRNL AUTH 2 D.A.ROBINSON,L.S.TORRIE,S.P.MCELROY,I.HALLYBURTON,S.NORVAL, JRNL AUTH 3 P.SCULLION,L.STOJANOVSKI,F.R.SIMEONS,D.VAN AALTEN, JRNL AUTH 4 J.A.FREARSON,R.BRENK,A.H.FAIRLAMB,M.A.FERGUSON,P.G.WYATT, JRNL AUTH 5 I.H.GILBERT,K.D.READ JRNL TITL LEAD OPTIMIZATION OF A PYRAZOLE SULFONAMIDE SERIES OF JRNL TITL 2 TRYPANOSOMA BRUCEI N-MYRISTOYLTRANSFERASE INHIBITORS: JRNL TITL 3 IDENTIFICATION AND EVALUATION OF CNS PENETRANT COMPOUNDS AS JRNL TITL 4 POTENTIAL TREATMENTS FOR STAGE 2 HUMAN AFRICAN JRNL TITL 5 TRYPANOSOMIASIS. JRNL REF J. MED. CHEM. V. 57 9855 2014 JRNL REFN ISSN 1520-4804 JRNL PMID 25412409 JRNL DOI 10.1021/JM500809C REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 34873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2646 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2357 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3172 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 403 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.07000 REMARK 3 B22 (A**2) : 2.23000 REMARK 3 B33 (A**2) : -1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.031 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3373 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4597 ; 2.089 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 393 ; 6.677 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;36.215 ;23.399 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 554 ;16.344 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.971 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 497 ; 0.161 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2538 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1963 ; 1.245 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3185 ; 2.104 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1410 ; 3.358 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1408 ; 5.090 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4UWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1290061512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37533 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2M NACL, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.39450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.80350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.44850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.80350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.39450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.44850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 86 REMARK 465 THR A 87 REMARK 465 GLN A 88 REMARK 465 PRO A 89 REMARK 465 VAL A 90 REMARK 465 PRO A 91 REMARK 465 ARG A 92 REMARK 465 PHE A 93 REMARK 465 ASP A 94 REMARK 465 GLU A 95 REMARK 465 THR A 96 REMARK 465 SER A 97 REMARK 465 THR A 98 REMARK 465 ASP A 99 REMARK 465 THR A 100 REMARK 465 THR A 348 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 347 CG CD OE1 OE2 REMARK 470 VAL A 349 CG1 CG2 REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 LYS A 385 CG CD CE NZ REMARK 470 ASN A 405 CG OD1 ND2 REMARK 470 LYS A 408 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 132 OG1 THR A 134 1.94 REMARK 500 O HOH A 2203 O HOH A 2340 1.98 REMARK 500 O HOH A 2293 O HOH A 2294 2.05 REMARK 500 O HOH A 2162 O HOH A 2389 2.12 REMARK 500 O HOH A 2101 O HOH A 2113 2.16 REMARK 500 O HOH A 2395 O HOH A 2400 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2076 O HOH A 2280 3554 1.51 REMARK 500 O HOH A 2208 O HOH A 2241 4455 1.72 REMARK 500 CB ALA A 288 O HOH A 2400 4555 1.73 REMARK 500 O HOH A 2247 O HOH A 2399 4555 1.81 REMARK 500 O HOH A 2203 O HOH A 2380 4545 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 351 CD GLU A 351 OE2 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 129 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 203 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 LEU A 207 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 ASP A 339 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 413 NE - CZ - NH1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 413 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 483 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 120 135.32 -34.47 REMARK 500 HIS A 365 13.64 59.42 REMARK 500 TYR A 395 -123.79 -113.80 REMARK 500 HIS A 439 -142.93 56.91 REMARK 500 LYS A 449 35.89 72.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2401 DISTANCE = 6.67 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XMQ A 1493 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYA A 1494 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UWJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ASPERGILLUS FUMIGATUS N-MYRISTOYL TRANSFERASE REMARK 900 IN COMPLEX WITH MYRISTOYL COA AND A CAPPED PYRAZOLE SULPHONAMIDE REMARK 900 LIGAND REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 86-492 DBREF 4UWI A 86 492 UNP Q9UVX3 NMT_ASPFU 86 492 SEQRES 1 A 407 GLN THR GLN PRO VAL PRO ARG PHE ASP GLU THR SER THR SEQRES 2 A 407 ASP THR GLY GLY PRO ILE LYS ILE ILE ASP PRO GLU LYS SEQRES 3 A 407 VAL SER LYS GLU PRO ASP ALA LEU LEU GLU GLY PHE GLU SEQRES 4 A 407 TRP ALA THR LEU ASP LEU THR ASN GLU THR GLU LEU GLN SEQRES 5 A 407 GLU LEU TRP ASP LEU LEU THR TYR HIS TYR VAL GLU ASP SEQRES 6 A 407 ASP ASN ALA MET PHE ARG PHE ARG TYR SER GLN SER PHE SEQRES 7 A 407 LEU HIS TRP ALA LEU MET SER PRO GLY TRP LYS LYS GLU SEQRES 8 A 407 TRP HIS VAL GLY VAL ARG ALA THR LYS SER ARG LYS LEU SEQRES 9 A 407 VAL ALA SER ILE CYS GLY VAL PRO THR GLU ILE ASN VAL SEQRES 10 A 407 ARG ASN GLN LYS LEU LYS VAL VAL GLU ILE ASN PHE LEU SEQRES 11 A 407 CYS ILE HIS LYS LYS LEU ARG SER LYS ARG LEU THR PRO SEQRES 12 A 407 VAL LEU ILE LYS GLU ILE THR ARG ARG CYS TYR LEU ASN SEQRES 13 A 407 GLY ILE TYR GLN ALA ILE TYR THR ALA GLY VAL VAL LEU SEQRES 14 A 407 PRO THR PRO VAL SER SER CYS ARG TYR TYR HIS ARG PRO SEQRES 15 A 407 LEU ASP TRP LEU LYS LEU TYR GLU VAL GLY PHE SER PRO SEQRES 16 A 407 LEU PRO ALA GLY SER THR LYS ALA ARG GLN ILE THR LYS SEQRES 17 A 407 ASN HIS LEU PRO SER THR THR SER THR PRO GLY LEU ARG SEQRES 18 A 407 PRO MET GLU PRO LYS ASP ILE ASP THR VAL HIS ASP LEU SEQRES 19 A 407 LEU GLN ARG TYR LEU SER ARG PHE ALA LEU ASN GLN ALA SEQRES 20 A 407 PHE THR ARG GLU GLU VAL ASP HIS TRP LEU VAL HIS LYS SEQRES 21 A 407 PRO GLU THR VAL LYS GLU GLN VAL VAL TRP ALA TYR VAL SEQRES 22 A 407 VAL GLU ASP PRO GLU THR HIS LYS ILE THR ASP PHE PHE SEQRES 23 A 407 SER PHE TYR ASN LEU GLU SER THR VAL ILE GLN ASN PRO SEQRES 24 A 407 LYS HIS ASP ASN VAL ARG ALA ALA TYR LEU TYR TYR TYR SEQRES 25 A 407 ALA THR GLU THR ALA PHE THR ASN ASN MET LYS ALA LEU SEQRES 26 A 407 LYS GLU ARG LEU LEU MET LEU MET ASN ASP ALA LEU ILE SEQRES 27 A 407 LEU ALA LYS LYS ALA HIS PHE ASP VAL PHE ASN ALA LEU SEQRES 28 A 407 THR LEU HIS ASP ASN PRO LEU PHE LEU GLU GLN LEU LYS SEQRES 29 A 407 PHE GLY ALA GLY ASP GLY GLN LEU HIS PHE TYR LEU TYR SEQRES 30 A 407 ASN TYR ARG THR ALA PRO VAL PRO GLY GLY VAL ASN GLU SEQRES 31 A 407 LYS ASN LEU PRO ASP GLU LYS ARG MET GLY GLY VAL GLY SEQRES 32 A 407 ILE VAL MET LEU HET XMQ A1493 30 HET MYA A1494 63 HETNAM XMQ 2,6-DICHLORO-4-[3-(4-METHYLPIPERAZIN-1-YL)PROPYL]-N-(1, HETNAM 2 XMQ 3,5-TRIMETHYL-1H-PYRAZOL-4-YL)BENZENESULFONAMIDE HETNAM MYA TETRADECANOYL-COA HETSYN MYA MYRISTOYL-COA FORMUL 2 XMQ C20 H29 CL2 N5 O2 S FORMUL 3 MYA C35 H62 N7 O17 P3 S FORMUL 4 HOH *403(H2 O) HELIX 1 1 ASP A 108 VAL A 112 5 5 HELIX 2 2 ASN A 132 TYR A 147 1 16 HELIX 3 3 SER A 160 MET A 169 1 10 HELIX 4 4 LYS A 174 GLU A 176 5 3 HELIX 5 5 LYS A 219 ARG A 222 5 4 HELIX 6 6 ARG A 225 ASN A 241 1 17 HELIX 7 7 ASP A 269 VAL A 276 1 8 HELIX 8 8 THR A 286 ASN A 294 1 9 HELIX 9 9 GLU A 309 LYS A 311 5 3 HELIX 10 10 ASP A 312 SER A 325 1 14 HELIX 11 11 THR A 334 VAL A 343 1 10 HELIX 12 12 THR A 401 ASN A 405 5 5 HELIX 13 13 ASN A 406 ALA A 428 1 23 HELIX 14 14 ASP A 440 PHE A 444 5 5 SHEET 1 AA 2 GLY A 102 PRO A 103 0 SHEET 2 AA 2 TYR A 464 ARG A 465 -1 O ARG A 465 N GLY A 102 SHEET 1 AB 5 PHE A 123 THR A 127 0 SHEET 2 AB 5 HIS A 178 ALA A 183 -1 O GLY A 180 N ALA A 126 SHEET 3 AB 5 LEU A 189 VAL A 202 -1 N VAL A 190 O VAL A 181 SHEET 4 AB 5 LEU A 329 GLN A 331 -1 O ASN A 330 N ASN A 201 SHEET 5 AB 5 VAL A 487 GLY A 488 -1 O GLY A 488 N GLN A 331 SHEET 1 AC12 PHE A 123 THR A 127 0 SHEET 2 AC12 HIS A 178 ALA A 183 -1 O GLY A 180 N ALA A 126 SHEET 3 AC12 LEU A 189 VAL A 202 -1 N VAL A 190 O VAL A 181 SHEET 4 AC12 GLN A 205 ILE A 217 -1 O GLN A 205 N VAL A 202 SHEET 5 AC12 ALA A 246 ALA A 250 1 O ILE A 247 N ILE A 212 SHEET 6 AC12 GLY A 451 TYR A 462 -1 O HIS A 458 N ALA A 250 SHEET 7 AC12 SER A 259 PRO A 267 -1 O SER A 259 N PHE A 459 SHEET 8 AC12 VAL A 432 LEU A 436 -1 O PHE A 433 N ARG A 266 SHEET 9 AC12 ASN A 388 THR A 399 1 O ALA A 392 N ASN A 434 SHEET 10 AC12 ILE A 367 VAL A 380 -1 O PHE A 370 N ALA A 398 SHEET 11 AC12 VAL A 354 GLU A 360 -1 O TRP A 355 N PHE A 373 SHEET 12 AC12 LEU A 305 PRO A 307 -1 O ARG A 306 N VAL A 358 SHEET 1 AD11 PHE A 123 THR A 127 0 SHEET 2 AD11 HIS A 178 ALA A 183 -1 O GLY A 180 N ALA A 126 SHEET 3 AD11 LEU A 189 VAL A 202 -1 N VAL A 190 O VAL A 181 SHEET 4 AD11 GLN A 205 ILE A 217 -1 O GLN A 205 N VAL A 202 SHEET 5 AD11 ALA A 246 ALA A 250 1 O ILE A 247 N ILE A 212 SHEET 6 AD11 GLY A 451 TYR A 462 -1 O HIS A 458 N ALA A 250 SHEET 7 AD11 SER A 259 PRO A 267 -1 O SER A 259 N PHE A 459 SHEET 8 AD11 VAL A 432 LEU A 436 -1 O PHE A 433 N ARG A 266 SHEET 9 AD11 ASN A 388 THR A 399 1 O ALA A 392 N ASN A 434 SHEET 10 AD11 ILE A 367 VAL A 380 -1 O PHE A 370 N ALA A 398 SHEET 11 AD11 PHE A 155 ARG A 158 -1 O ARG A 156 N THR A 379 SITE 1 AC1 18 VAL A 148 ASP A 150 PHE A 155 ARG A 156 SITE 2 AC1 18 PHE A 157 ASN A 213 THR A 249 TYR A 263 SITE 3 AC1 18 HIS A 265 SER A 378 TYR A 393 GLY A 455 SITE 4 AC1 18 LEU A 492 HOH A2077 HOH A2206 HOH A2226 SITE 5 AC1 18 HOH A2329 HOH A2391 SITE 1 AC2 30 HIS A 146 TYR A 147 VAL A 148 ASN A 213 SITE 2 AC2 30 PHE A 214 LEU A 215 CYS A 216 ILE A 217 SITE 3 AC2 30 ARG A 222 SER A 223 LYS A 224 ARG A 225 SITE 4 AC2 30 LEU A 226 THR A 227 THR A 235 CYS A 238 SITE 5 AC2 30 TYR A 244 TYR A 248 THR A 249 LEU A 254 SITE 6 AC2 30 TYR A 462 HOH A2181 HOH A2184 HOH A2393 SITE 7 AC2 30 HOH A2394 HOH A2395 HOH A2396 HOH A2397 SITE 8 AC2 30 HOH A2398 HOH A2399 CRYST1 50.789 56.897 141.607 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019689 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017576 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007062 0.00000