HEADER TRANSFERASE 22-AUG-14 4UXH TITLE LEISHMANIA MAJOR THYMIDINE KINASE IN COMPLEX WITH AP5DT COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 FRAGMENT: RESIDUES 2-183; SOURCE 3 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 4 ORGANISM_TAXID: 5664; SOURCE 5 STRAIN: FRIEDLIN; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.TIMM,C.BOSCH-NAVARRETE,E.RECIO,J.E.NETTLESHIP,H.RADA,D.GONZALEZ- AUTHOR 2 PACANOWSKA,K.S.WILSON REVDAT 2 08-MAY-24 4UXH 1 REMARK LINK REVDAT 1 27-MAY-15 4UXH 0 JRNL AUTH J.TIMM,C.BOSCH-NAVARRETE,E.RECIO,J.E.NETTLESHIP,H.RADA, JRNL AUTH 2 D.GONZALEZ-PACANOWSKA,K.S.WILSON JRNL TITL STRUCTURAL AND KINETIC CHARACTERIZATION OF THYMIDINE KINASE JRNL TITL 2 FROM LEISHMANIA MAJOR. JRNL REF PLOS NEGL TROP DIS V. 9 3781 2015 JRNL REFN ISSN 1935-2727 JRNL PMID 25978379 JRNL DOI 10.1371/JOURNAL.PNTD.0003781 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 15762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 829 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1133 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2592 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -2.56000 REMARK 3 B12 (A**2) : 0.39000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.366 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.263 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.194 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.622 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2764 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2545 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3754 ; 1.694 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5806 ; 1.027 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 335 ; 5.880 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;34.416 ;22.810 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 448 ;13.719 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;17.422 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 418 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3055 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 642 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1346 ; 1.904 ; 2.815 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1345 ; 1.903 ; 2.812 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1676 ; 3.090 ; 4.203 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1677 ; 3.089 ; 4.206 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1418 ; 3.141 ; 3.275 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1419 ; 3.140 ; 3.276 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2078 ; 4.532 ; 4.826 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3014 ; 6.392 ;23.768 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3015 ; 6.391 ;23.775 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 179 B 3 179 9184 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0614 -24.8494 11.0430 REMARK 3 T TENSOR REMARK 3 T11: 0.0369 T22: 0.2510 REMARK 3 T33: 0.0768 T12: -0.0068 REMARK 3 T13: 0.0135 T23: -0.1215 REMARK 3 L TENSOR REMARK 3 L11: 2.4504 L22: 1.5465 REMARK 3 L33: 2.5338 L12: -0.3972 REMARK 3 L13: 0.2425 L23: -0.1152 REMARK 3 S TENSOR REMARK 3 S11: -0.1732 S12: 0.3038 S13: -0.0932 REMARK 3 S21: -0.0705 S22: 0.0094 S23: 0.0090 REMARK 3 S31: 0.1304 S32: -0.0537 S33: 0.1638 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 181 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9134 -29.6013 35.1782 REMARK 3 T TENSOR REMARK 3 T11: 0.1761 T22: 0.1058 REMARK 3 T33: 0.0818 T12: -0.0525 REMARK 3 T13: 0.0871 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 3.2304 L22: 2.3516 REMARK 3 L33: 2.7591 L12: -0.4965 REMARK 3 L13: 0.5376 L23: 0.5089 REMARK 3 S TENSOR REMARK 3 S11: -0.0602 S12: -0.1333 S13: -0.3397 REMARK 3 S21: 0.3837 S22: -0.0778 S23: 0.1458 REMARK 3 S31: 0.4423 S32: -0.3762 S33: 0.1379 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES WITH TLS ADDED. HYDROGENS HAVE REMARK 3 BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4UXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1290061572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16728 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 45.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRI-SODIUM CITRATE PH 5.5, 20 % REMARK 280 (W/V) PEG 3000, 1 MM AP5DT, 1 MM DTHD, 1 MM APPNHP, 3 MM MGCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 216.40000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 108.20000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 162.30000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.10000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 270.50000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 216.40000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 108.20000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.10000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 162.30000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 270.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.10000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 PRO A 1 REMARK 465 PHE A 2 REMARK 465 SER A 53 REMARK 465 HIS A 54 REMARK 465 ASP A 55 REMARK 465 GLN A 56 REMARK 465 GLN A 180 REMARK 465 GLN A 181 REMARK 465 LEU A 182 REMARK 465 PRO A 183 REMARK 465 GLY B 0 REMARK 465 PRO B 1 REMARK 465 PHE B 2 REMARK 465 THR B 44 REMARK 465 ARG B 45 REMARK 465 TYR B 46 REMARK 465 ASP B 47 REMARK 465 GLU B 48 REMARK 465 HIS B 49 REMARK 465 ASN B 50 REMARK 465 VAL B 51 REMARK 465 ALA B 52 REMARK 465 SER B 53 REMARK 465 HIS B 54 REMARK 465 ASP B 55 REMARK 465 GLN B 56 REMARK 465 LEU B 57 REMARK 465 MET B 58 REMARK 465 LEU B 182 REMARK 465 PRO B 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 HIS A 49 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 51 CG1 CG2 REMARK 470 LEU A 57 CG CD1 CD2 REMARK 470 MET A 58 CG SD CE REMARK 470 ASP A 94 CG OD1 OD2 REMARK 470 MET A 107 CE REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 SER A 178 OG REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 ARG B 33 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 59 CG CD1 CD2 REMARK 470 GLN B 62 CG CD OE1 NE2 REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 ARG B 77 CG CD NE CZ NH1 NH2 REMARK 470 MET B 107 CE REMARK 470 GLU B 158 CG CD OE1 OE2 REMARK 470 SER B 178 OG REMARK 470 GLN B 181 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 49 40.81 -149.01 REMARK 500 GLU A 70 -8.64 -59.98 REMARK 500 ARG A 72 -116.38 52.25 REMARK 500 HIS A 144 8.42 57.84 REMARK 500 ARG B 72 -121.48 57.38 REMARK 500 HIS B 144 8.15 58.14 REMARK 500 GLN B 180 -59.70 81.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1181 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 140 SG REMARK 620 2 CYS A 143 SG 104.9 REMARK 620 3 CYS A 173 SG 115.5 123.9 REMARK 620 4 CYS A 176 SG 103.5 116.0 91.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1183 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 140 SG REMARK 620 2 CYS B 143 SG 107.1 REMARK 620 3 CYS B 173 SG 114.5 120.1 REMARK 620 4 CYS B 176 SG 105.2 114.3 94.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T5A A 1180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T5A B 1182 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1183 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UXI RELATED DB: PDB REMARK 900 LEISHMANIA MAJOR THYMIDINE KINASE IN COMPLEX WITH THYMIDINE REMARK 900 RELATED ID: 4UXJ RELATED DB: PDB REMARK 900 LEISHMANIA MAJOR THYMIDINE KINASE IN COMPLEX WITH DTTP DBREF 4UXH A 2 183 UNP Q4QC75 Q4QC75_LEIMA 2 183 DBREF 4UXH B 2 183 UNP Q4QC75 Q4QC75_LEIMA 2 183 SEQADV 4UXH GLY A 0 UNP Q4QC75 EXPRESSION TAG SEQADV 4UXH PRO A 1 UNP Q4QC75 EXPRESSION TAG SEQADV 4UXH GLY B 0 UNP Q4QC75 EXPRESSION TAG SEQADV 4UXH PRO B 1 UNP Q4QC75 EXPRESSION TAG SEQRES 1 A 184 GLY PRO PHE ARG GLY ARG ILE GLU LEU ILE ILE GLY PRO SEQRES 2 A 184 MET PHE ALA GLY LYS THR THR GLU LEU MET ARG ARG VAL SEQRES 3 A 184 LYS ARG GLU ILE HIS ALA ARG ARG SER CYS PHE VAL ILE SEQRES 4 A 184 LYS TYR SER LYS ASP THR ARG TYR ASP GLU HIS ASN VAL SEQRES 5 A 184 ALA SER HIS ASP GLN LEU MET LEU ARG ALA GLN ALA ALA SEQRES 6 A 184 VAL SER GLN LEU THR GLU VAL ARG ASP THR TRP LYS ARG SEQRES 7 A 184 PHE ASP VAL LEU ALA ILE ASP GLU GLY GLN PHE PHE SER SEQRES 8 A 184 ASP LEU VAL ASP PHE CYS ASN THR ALA ALA ASP ALA GLY SEQRES 9 A 184 LYS VAL VAL MET VAL SER ALA LEU ASP GLY ASP TYR ARG SEQRES 10 A 184 ARG LYS PRO PHE GLY GLN ILE CYS GLU LEU VAL PRO TYR SEQRES 11 A 184 CYS GLU ALA VAL ASP LYS LEU THR ALA VAL CYS MET MET SEQRES 12 A 184 CYS HIS GLU GLN PRO ALA CYS PHE THR ARG ARG THR VAL SEQRES 13 A 184 ASN VAL GLU GLN GLN GLU LEU ILE GLY GLY ALA ASP MET SEQRES 14 A 184 TYR ILE ALA THR CYS ARG GLU CYS TYR SER LYS GLN GLN SEQRES 15 A 184 LEU PRO SEQRES 1 B 184 GLY PRO PHE ARG GLY ARG ILE GLU LEU ILE ILE GLY PRO SEQRES 2 B 184 MET PHE ALA GLY LYS THR THR GLU LEU MET ARG ARG VAL SEQRES 3 B 184 LYS ARG GLU ILE HIS ALA ARG ARG SER CYS PHE VAL ILE SEQRES 4 B 184 LYS TYR SER LYS ASP THR ARG TYR ASP GLU HIS ASN VAL SEQRES 5 B 184 ALA SER HIS ASP GLN LEU MET LEU ARG ALA GLN ALA ALA SEQRES 6 B 184 VAL SER GLN LEU THR GLU VAL ARG ASP THR TRP LYS ARG SEQRES 7 B 184 PHE ASP VAL LEU ALA ILE ASP GLU GLY GLN PHE PHE SER SEQRES 8 B 184 ASP LEU VAL ASP PHE CYS ASN THR ALA ALA ASP ALA GLY SEQRES 9 B 184 LYS VAL VAL MET VAL SER ALA LEU ASP GLY ASP TYR ARG SEQRES 10 B 184 ARG LYS PRO PHE GLY GLN ILE CYS GLU LEU VAL PRO TYR SEQRES 11 B 184 CYS GLU ALA VAL ASP LYS LEU THR ALA VAL CYS MET MET SEQRES 12 B 184 CYS HIS GLU GLN PRO ALA CYS PHE THR ARG ARG THR VAL SEQRES 13 B 184 ASN VAL GLU GLN GLN GLU LEU ILE GLY GLY ALA ASP MET SEQRES 14 B 184 TYR ILE ALA THR CYS ARG GLU CYS TYR SER LYS GLN GLN SEQRES 15 B 184 LEU PRO HET T5A A1180 55 HET ZN A1181 1 HET T5A B1182 55 HET ZN B1183 1 HETNAM T5A P1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE HETNAM ZN ZINC ION FORMUL 3 T5A 2(C20 H30 N7 O23 P5) FORMUL 4 ZN 2(ZN 2+) FORMUL 7 HOH *57(H2 O) HELIX 1 1 GLY A 16 ALA A 31 1 16 HELIX 2 2 THR A 44 HIS A 49 1 6 HELIX 3 3 GLN A 67 ARG A 72 5 6 HELIX 4 4 ASP A 73 PHE A 78 5 6 HELIX 5 5 GLU A 85 PHE A 89 5 5 HELIX 6 6 ASP A 91 ALA A 102 1 12 HELIX 7 7 GLN A 122 VAL A 127 1 6 HELIX 8 8 PRO A 128 CYS A 130 5 3 HELIX 9 9 CYS A 173 SER A 178 1 6 HELIX 10 10 GLY B 16 ALA B 31 1 16 HELIX 11 11 GLN B 67 ARG B 72 5 6 HELIX 12 12 ASP B 73 PHE B 78 5 6 HELIX 13 13 GLU B 85 PHE B 89 5 5 HELIX 14 14 ASP B 91 ALA B 102 1 12 HELIX 15 15 GLN B 122 VAL B 127 1 6 HELIX 16 16 PRO B 128 CYS B 130 5 3 HELIX 17 17 CYS B 173 LYS B 179 1 7 SHEET 1 AA 6 ARG A 60 VAL A 65 0 SHEET 2 AA 6 CYS A 35 TYR A 40 1 O CYS A 35 N ALA A 61 SHEET 3 AA 6 VAL A 80 ILE A 83 1 O VAL A 80 N PHE A 36 SHEET 4 AA 6 VAL A 105 SER A 109 1 O VAL A 105 N LEU A 81 SHEET 5 AA 6 ARG A 5 ILE A 10 1 O ARG A 5 N VAL A 106 SHEET 6 AA 6 ALA A 132 LYS A 135 1 O ALA A 132 N LEU A 8 SHEET 1 AB 2 ALA A 138 VAL A 139 0 SHEET 2 AB 2 PRO A 147 ALA A 148 -1 O ALA A 148 N ALA A 138 SHEET 1 AC 2 PHE A 150 ARG A 153 0 SHEET 2 AC 2 TYR A 169 THR A 172 -1 O ILE A 170 N ARG A 152 SHEET 1 BA 6 ARG B 60 VAL B 65 0 SHEET 2 BA 6 CYS B 35 TYR B 40 1 O CYS B 35 N ALA B 61 SHEET 3 BA 6 VAL B 80 ILE B 83 1 O VAL B 80 N PHE B 36 SHEET 4 BA 6 VAL B 105 SER B 109 1 O VAL B 105 N LEU B 81 SHEET 5 BA 6 ARG B 5 ILE B 10 1 O ARG B 5 N VAL B 106 SHEET 6 BA 6 ALA B 132 LYS B 135 1 O ALA B 132 N LEU B 8 SHEET 1 BB 2 ALA B 138 VAL B 139 0 SHEET 2 BB 2 PRO B 147 ALA B 148 -1 O ALA B 148 N ALA B 138 SHEET 1 BC 2 PHE B 150 ARG B 153 0 SHEET 2 BC 2 TYR B 169 THR B 172 -1 O ILE B 170 N ARG B 152 LINK SG CYS A 140 ZN ZN A1181 1555 1555 2.35 LINK SG CYS A 143 ZN ZN A1181 1555 1555 2.30 LINK SG CYS A 173 ZN ZN A1181 1555 1555 2.29 LINK SG CYS A 176 ZN ZN A1181 1555 1555 2.35 LINK SG CYS B 140 ZN ZN B1183 1555 1555 2.30 LINK SG CYS B 143 ZN ZN B1183 1555 1555 2.30 LINK SG CYS B 173 ZN ZN B1183 1555 1555 2.33 LINK SG CYS B 176 ZN ZN B1183 1555 1555 2.33 SITE 1 AC1 36 MET A 13 PHE A 14 ALA A 15 GLY A 16 SITE 2 AC1 36 LYS A 17 THR A 18 THR A 19 MET A 22 SITE 3 AC1 36 LYS A 39 ASP A 43 ARG A 45 TYR A 46 SITE 4 AC1 36 GLU A 85 GLN A 87 PHE A 88 LEU A 111 SITE 5 AC1 36 ASP A 114 TYR A 115 PHE A 120 THR A 151 SITE 6 AC1 36 ARG A 153 GLN A 160 GLU A 161 LEU A 162 SITE 7 AC1 36 ILE A 163 GLY A 164 TYR A 169 HOH A2002 SITE 8 AC1 36 HOH A2003 HOH A2005 HOH A2006 HOH A2007 SITE 9 AC1 36 HOH A2012 HOH A2013 HOH A2035 HIS B 30 SITE 1 AC2 4 CYS A 140 CYS A 143 CYS A 173 CYS A 176 SITE 1 AC3 30 HIS A 30 MET B 13 PHE B 14 ALA B 15 SITE 2 AC3 30 GLY B 16 LYS B 17 THR B 18 THR B 19 SITE 3 AC3 30 MET B 22 LYS B 39 ASP B 43 GLU B 85 SITE 4 AC3 30 GLN B 87 PHE B 88 LEU B 111 ASP B 114 SITE 5 AC3 30 TYR B 115 PHE B 120 ARG B 153 GLN B 160 SITE 6 AC3 30 GLU B 161 LEU B 162 ILE B 163 GLY B 164 SITE 7 AC3 30 TYR B 169 HOH B2002 HOH B2003 HOH B2005 SITE 8 AC3 30 HOH B2006 HOH B2022 SITE 1 AC4 4 CYS B 140 CYS B 143 CYS B 173 CYS B 176 CRYST1 64.149 64.149 324.600 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015589 0.009000 0.000000 0.00000 SCALE2 0.000000 0.018000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003081 0.00000