HEADER TRANSFERASE 29-AUG-14 4UY9 TITLE STRUCTURE OF MLK1 KINASE DOMAIN WITH LEUCINE ZIPPER 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 9; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN WITH N-TERMINAL LEUCINE ZIPPER 1, RESIDUES COMPND 5 135-456; COMPND 6 SYNONYM: MIXED LINEAGE KINASE 1, MLK1 KINASE DOMAIN WITH LEUCINE COMPND 7 ZIPP; COMPND 8 EC: 2.7.11.25; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: PROTEIN DEPHOSPHORYLATED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF21 KEYWDS MLK FAMILY, MLK1 AND MLK3 SUBTYPE, ATP-BINDING, KINASE, NUCLEOTIDE- KEYWDS 2 BINDING, PHOSPHOPROTEIN, SERINE/THREONINE-PROTEIN KINASE, SH3 KEYWDS 3 DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.READ,C.BRASSINGTON,H.K.POLLARD,C.PHILLIPS,I.GREEN,R.OVERMANN, AUTHOR 2 M.COLLIER REVDAT 5 10-JAN-24 4UY9 1 REMARK REVDAT 4 24-APR-19 4UY9 1 SOURCE REVDAT 3 02-MAR-16 4UY9 1 JRNL REVDAT 2 16-DEC-15 4UY9 1 JRNL REVDAT 1 30-SEP-15 4UY9 0 JRNL AUTH A.A.MARUSIAK,N.L.STEPHENSON,H.BAIK,E.W.TROTTER,Y.LI,K.BLYTH, JRNL AUTH 2 S.MASON,P.CHAPMAN,L.A.PUTO,J.A.READ,C.BRASSINGTON, JRNL AUTH 3 H.K.POLLARD,C.PHILLIPS,I.GREEN,R.OVERMAN,M.COLLIER, JRNL AUTH 4 E.TESTONI,C.MILLER,T.HUNTER,O.J.SANSOM,J.BROGNARD JRNL TITL RECURRENT MLK4 LOSS-OF-FUNCTION MUTATIONS SUPPRESS JNK JRNL TITL 2 SIGNALING TO PROMOTE COLON TUMORIGENESIS. JRNL REF CANCER RES. V. 76 724 2016 JRNL REFN ISSN 0008-5472 JRNL PMID 26637668 JRNL DOI 10.1158/0008-5472.CAN-15-0701-T REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1494 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2835 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2316 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2681 REMARK 3 BIN R VALUE (WORKING SET) : 0.2289 REMARK 3 BIN FREE R VALUE : 0.2773 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.43 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 154 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4785 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 91.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.54300 REMARK 3 B22 (A**2) : 0.54300 REMARK 3 B33 (A**2) : -1.08600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.420 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.415 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.267 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.375 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.262 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4917 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6706 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1622 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 107 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 727 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4917 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 654 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5395 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.95 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.68 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -25.5198 17.7704 9.3309 REMARK 3 T TENSOR REMARK 3 T11: 0.1056 T22: -0.2298 REMARK 3 T33: -0.1921 T12: 0.0881 REMARK 3 T13: 0.0341 T23: -0.0626 REMARK 3 L TENSOR REMARK 3 L11: 1.8208 L22: 2.0336 REMARK 3 L33: 2.3589 L12: -1.2252 REMARK 3 L13: -0.1813 L23: 0.2586 REMARK 3 S TENSOR REMARK 3 S11: 0.1307 S12: -0.0548 S13: 0.0256 REMARK 3 S21: -0.2072 S22: -0.0274 S23: 0.1656 REMARK 3 S31: -0.5313 S32: -0.3222 S33: -0.1033 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -57.1074 56.4280 30.0557 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: -0.2899 REMARK 3 T33: -0.2059 T12: 0.1868 REMARK 3 T13: -0.1155 T23: -0.0923 REMARK 3 L TENSOR REMARK 3 L11: 2.1715 L22: 2.2002 REMARK 3 L33: 3.2870 L12: -0.1617 REMARK 3 L13: -0.9202 L23: 0.2523 REMARK 3 S TENSOR REMARK 3 S11: 0.3264 S12: 0.0614 S13: -0.1437 REMARK 3 S21: -0.4357 S22: -0.2041 S23: 0.2930 REMARK 3 S31: 0.2175 S32: -0.0452 S33: -0.1223 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1290061634. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29688 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 78.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 0.91000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3DTC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 138.98333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 277.96667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 208.47500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 347.45833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.49167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 138.98333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 277.96667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 347.45833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 208.47500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 69.49167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -48.46500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 83.94384 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 69.49167 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 134 REMARK 465 GLU A 448 REMARK 465 GLU A 449 REMARK 465 GLU A 450 REMARK 465 LEU A 451 REMARK 465 THR A 452 REMARK 465 ARG A 453 REMARK 465 ALA A 454 REMARK 465 ALA A 455 REMARK 465 LEU A 456 REMARK 465 GLY B 134 REMARK 465 GLU B 450 REMARK 465 LEU B 451 REMARK 465 THR B 452 REMARK 465 ARG B 453 REMARK 465 ALA B 454 REMARK 465 ALA B 455 REMARK 465 LEU B 456 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 135 CG CD OE1 NE2 REMARK 470 ASP A 178 CG OD1 OD2 REMARK 470 ILE A 181 CG1 CG2 CD1 REMARK 470 SER A 182 OG REMARK 470 LYS A 199 CG CD CE NZ REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 ASN A 282 CG OD1 ND2 REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 THR A 304 OG1 CG2 REMARK 470 LYS A 306 CG CD CE NZ REMARK 470 THR A 373 OG1 CG2 REMARK 470 GLU A 376 CG CD OE1 OE2 REMARK 470 LYS A 380 CG CD CE NZ REMARK 470 GLU A 408 CG CD OE1 OE2 REMARK 470 PHE A 411 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 413 CG CD OE1 OE2 REMARK 470 GLU A 432 CG CD OE1 OE2 REMARK 470 LYS A 440 CG CD CE NZ REMARK 470 LYS A 442 CG CD CE NZ REMARK 470 GLU A 443 CG CD OE1 OE2 REMARK 470 GLN B 135 CG CD OE1 NE2 REMARK 470 ASP B 166 CG OD1 OD2 REMARK 470 LYS B 171 CG CD CE NZ REMARK 470 ARG B 174 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 175 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 178 CG OD1 OD2 REMARK 470 ILE B 181 CG1 CG2 CD1 REMARK 470 SER B 182 OG REMARK 470 GLN B 183 CG CD OE1 NE2 REMARK 470 ILE B 185 CG1 CG2 CD1 REMARK 470 GLU B 186 CG CD OE1 OE2 REMARK 470 LYS B 193 CG CD CE NZ REMARK 470 LEU B 194 CG CD1 CD2 REMARK 470 LYS B 199 CG CD CE NZ REMARK 470 LYS B 212 CG CD CE NZ REMARK 470 GLU B 213 CG CD OE1 OE2 REMARK 470 LYS B 235 CG CD CE NZ REMARK 470 ILE B 261 CG1 CG2 CD1 REMARK 470 LYS B 279 CG CD CE NZ REMARK 470 ASN B 282 CG OD1 ND2 REMARK 470 ARG B 299 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 300 CG CD OE1 OE2 REMARK 470 ARG B 303 CG CD NE CZ NH1 NH2 REMARK 470 THR B 304 OG1 CG2 REMARK 470 SER B 308 OG REMARK 470 THR B 312 OG1 CG2 REMARK 470 THR B 373 OG1 CG2 REMARK 470 GLU B 376 CG CD OE1 OE2 REMARK 470 LYS B 380 CG CD CE NZ REMARK 470 PHE B 411 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 413 CG CD OE1 OE2 REMARK 470 LYS B 416 CG CD CE NZ REMARK 470 GLN B 431 CG CD OE1 NE2 REMARK 470 GLU B 432 CG CD OE1 OE2 REMARK 470 MET B 433 CG SD CE REMARK 470 GLN B 436 CG CD OE1 NE2 REMARK 470 LYS B 440 CG CD CE NZ REMARK 470 LYS B 442 CG CD CE NZ REMARK 470 GLU B 449 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 376 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 GLU B 376 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 267 -14.60 79.11 REMARK 500 ASP A 268 56.62 -152.95 REMARK 500 MET A 307 26.39 -78.25 REMARK 500 SER A 308 -144.96 43.14 REMARK 500 ALA A 309 -138.52 -173.34 REMARK 500 ALA A 310 -82.19 -170.64 REMARK 500 PHE A 411 -51.88 -21.49 REMARK 500 ASP A 417 -44.26 -163.94 REMARK 500 ARG B 267 -15.33 78.50 REMARK 500 ASP B 268 56.51 -153.28 REMARK 500 MET B 307 25.61 -78.37 REMARK 500 SER B 308 -144.03 43.11 REMARK 500 ALA B 309 -152.16 178.46 REMARK 500 ALA B 310 -78.16 -168.42 REMARK 500 PHE B 411 -53.08 -20.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A3078 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A3080 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH B2075 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH B2076 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH B2077 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH B2079 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH B2082 DISTANCE = 7.15 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UYA RELATED DB: PDB REMARK 900 STRUCTURE OF MLK4 KINASE DOMAIN WITH ATPGAMMAS DBREF 4UY9 A 135 456 UNP P80192 M3K9_HUMAN 135 456 DBREF 4UY9 B 135 456 UNP P80192 M3K9_HUMAN 135 456 SEQADV 4UY9 GLY A 134 UNP P80192 EXPRESSION TAG SEQADV 4UY9 GLY B 134 UNP P80192 EXPRESSION TAG SEQRES 1 A 323 GLY GLN LEU LEU GLU ILE ASP PHE ALA GLU LEU THR LEU SEQRES 2 A 323 GLU GLU ILE ILE GLY ILE GLY GLY PHE GLY LYS VAL TYR SEQRES 3 A 323 ARG ALA PHE TRP ILE GLY ASP GLU VAL ALA VAL LYS ALA SEQRES 4 A 323 ALA ARG HIS ASP PRO ASP GLU ASP ILE SER GLN THR ILE SEQRES 5 A 323 GLU ASN VAL ARG GLN GLU ALA LYS LEU PHE ALA MET LEU SEQRES 6 A 323 LYS HIS PRO ASN ILE ILE ALA LEU ARG GLY VAL CYS LEU SEQRES 7 A 323 LYS GLU PRO ASN LEU CYS LEU VAL MET GLU PHE ALA ARG SEQRES 8 A 323 GLY GLY PRO LEU ASN ARG VAL LEU SER GLY LYS ARG ILE SEQRES 9 A 323 PRO PRO ASP ILE LEU VAL ASN TRP ALA VAL GLN ILE ALA SEQRES 10 A 323 ARG GLY MET ASN TYR LEU HIS ASP GLU ALA ILE VAL PRO SEQRES 11 A 323 ILE ILE HIS ARG ASP LEU LYS SER SER ASN ILE LEU ILE SEQRES 12 A 323 LEU GLN LYS VAL GLU ASN GLY ASP LEU SER ASN LYS ILE SEQRES 13 A 323 LEU LYS ILE THR ASP PHE GLY LEU ALA ARG GLU TRP HIS SEQRES 14 A 323 ARG THR THR LYS MET SER ALA ALA GLY THR TYR ALA TRP SEQRES 15 A 323 MET ALA PRO GLU VAL ILE ARG ALA SER MET PHE SER LYS SEQRES 16 A 323 GLY SER ASP VAL TRP SER TYR GLY VAL LEU LEU TRP GLU SEQRES 17 A 323 LEU LEU THR GLY GLU VAL PRO PHE ARG GLY ILE ASP GLY SEQRES 18 A 323 LEU ALA VAL ALA TYR GLY VAL ALA MET ASN LYS LEU ALA SEQRES 19 A 323 LEU PRO ILE PRO SER THR CYS PRO GLU PRO PHE ALA LYS SEQRES 20 A 323 LEU MET GLU ASP CYS TRP ASN PRO ASP PRO HIS SER ARG SEQRES 21 A 323 PRO SER PHE THR ASN ILE LEU ASP GLN LEU THR THR ILE SEQRES 22 A 323 GLU GLU SER GLY PHE PHE GLU MET PRO LYS ASP SER PHE SEQRES 23 A 323 HIS CYS LEU GLN ASP ASN TRP LYS HIS GLU ILE GLN GLU SEQRES 24 A 323 MET PHE ASP GLN LEU ARG ALA LYS GLU LYS GLU LEU ARG SEQRES 25 A 323 THR TRP GLU GLU GLU LEU THR ARG ALA ALA LEU SEQRES 1 B 323 GLY GLN LEU LEU GLU ILE ASP PHE ALA GLU LEU THR LEU SEQRES 2 B 323 GLU GLU ILE ILE GLY ILE GLY GLY PHE GLY LYS VAL TYR SEQRES 3 B 323 ARG ALA PHE TRP ILE GLY ASP GLU VAL ALA VAL LYS ALA SEQRES 4 B 323 ALA ARG HIS ASP PRO ASP GLU ASP ILE SER GLN THR ILE SEQRES 5 B 323 GLU ASN VAL ARG GLN GLU ALA LYS LEU PHE ALA MET LEU SEQRES 6 B 323 LYS HIS PRO ASN ILE ILE ALA LEU ARG GLY VAL CYS LEU SEQRES 7 B 323 LYS GLU PRO ASN LEU CYS LEU VAL MET GLU PHE ALA ARG SEQRES 8 B 323 GLY GLY PRO LEU ASN ARG VAL LEU SER GLY LYS ARG ILE SEQRES 9 B 323 PRO PRO ASP ILE LEU VAL ASN TRP ALA VAL GLN ILE ALA SEQRES 10 B 323 ARG GLY MET ASN TYR LEU HIS ASP GLU ALA ILE VAL PRO SEQRES 11 B 323 ILE ILE HIS ARG ASP LEU LYS SER SER ASN ILE LEU ILE SEQRES 12 B 323 LEU GLN LYS VAL GLU ASN GLY ASP LEU SER ASN LYS ILE SEQRES 13 B 323 LEU LYS ILE THR ASP PHE GLY LEU ALA ARG GLU TRP HIS SEQRES 14 B 323 ARG THR THR LYS MET SER ALA ALA GLY THR TYR ALA TRP SEQRES 15 B 323 MET ALA PRO GLU VAL ILE ARG ALA SER MET PHE SER LYS SEQRES 16 B 323 GLY SER ASP VAL TRP SER TYR GLY VAL LEU LEU TRP GLU SEQRES 17 B 323 LEU LEU THR GLY GLU VAL PRO PHE ARG GLY ILE ASP GLY SEQRES 18 B 323 LEU ALA VAL ALA TYR GLY VAL ALA MET ASN LYS LEU ALA SEQRES 19 B 323 LEU PRO ILE PRO SER THR CYS PRO GLU PRO PHE ALA LYS SEQRES 20 B 323 LEU MET GLU ASP CYS TRP ASN PRO ASP PRO HIS SER ARG SEQRES 21 B 323 PRO SER PHE THR ASN ILE LEU ASP GLN LEU THR THR ILE SEQRES 22 B 323 GLU GLU SER GLY PHE PHE GLU MET PRO LYS ASP SER PHE SEQRES 23 B 323 HIS CYS LEU GLN ASP ASN TRP LYS HIS GLU ILE GLN GLU SEQRES 24 B 323 MET PHE ASP GLN LEU ARG ALA LYS GLU LYS GLU LEU ARG SEQRES 25 B 323 THR TRP GLU GLU GLU LEU THR ARG ALA ALA LEU FORMUL 3 HOH *169(H2 O) HELIX 1 1 ASP A 140 ALA A 142 5 3 HELIX 2 2 ASP A 180 ALA A 196 1 17 HELIX 3 3 LEU A 228 LYS A 235 1 8 HELIX 4 4 PRO A 238 GLU A 259 1 22 HELIX 5 5 LYS A 270 SER A 272 5 3 HELIX 6 6 VAL A 280 ASP A 284 5 5 HELIX 7 7 ALA A 298 HIS A 302 5 5 HELIX 8 8 GLY A 311 MET A 316 5 6 HELIX 9 9 ALA A 317 SER A 324 1 8 HELIX 10 10 SER A 327 GLY A 345 1 19 HELIX 11 11 ASP A 353 MET A 363 1 11 HELIX 12 12 PRO A 377 TRP A 386 1 10 HELIX 13 13 ASP A 389 ARG A 393 5 5 HELIX 14 14 SER A 395 SER A 409 1 15 HELIX 15 15 GLY A 410 GLU A 413 5 4 HELIX 16 16 ASP A 417 LYS A 440 1 24 HELIX 17 17 LYS A 440 ARG A 445 1 6 HELIX 18 18 ASP B 140 ALA B 142 5 3 HELIX 19 19 ASP B 180 ALA B 196 1 17 HELIX 20 20 LEU B 228 LYS B 235 1 8 HELIX 21 21 PRO B 238 GLU B 259 1 22 HELIX 22 22 LYS B 270 SER B 272 5 3 HELIX 23 23 VAL B 280 ASP B 284 5 5 HELIX 24 24 ALA B 298 HIS B 302 5 5 HELIX 25 25 THR B 304 SER B 308 5 5 HELIX 26 26 GLY B 311 MET B 316 5 6 HELIX 27 27 ALA B 317 SER B 324 1 8 HELIX 28 28 SER B 327 GLY B 345 1 19 HELIX 29 29 ASP B 353 MET B 363 1 11 HELIX 30 30 PRO B 377 TRP B 386 1 10 HELIX 31 31 ASP B 389 ARG B 393 5 5 HELIX 32 32 SER B 395 SER B 409 1 15 HELIX 33 33 GLY B 410 GLU B 413 5 4 HELIX 34 34 PRO B 415 LYS B 440 1 26 HELIX 35 35 LYS B 440 ARG B 445 1 6 SHEET 1 AA 5 LEU A 144 ILE A 152 0 SHEET 2 AA 5 GLY A 156 TRP A 163 -1 O VAL A 158 N ILE A 150 SHEET 3 AA 5 ASP A 166 ALA A 173 -1 O ASP A 166 N TRP A 163 SHEET 4 AA 5 CYS A 217 GLU A 221 -1 O LEU A 218 N LYS A 171 SHEET 5 AA 5 LEU A 206 CYS A 210 -1 N ARG A 207 O VAL A 219 SHEET 1 AB 3 GLY A 226 PRO A 227 0 SHEET 2 AB 3 ILE A 274 ILE A 276 -1 N ILE A 276 O GLY A 226 SHEET 3 AB 3 LEU A 290 ILE A 292 -1 O LYS A 291 N LEU A 275 SHEET 1 BA 5 LEU B 144 GLY B 151 0 SHEET 2 BA 5 GLY B 156 TRP B 163 -1 O VAL B 158 N ILE B 150 SHEET 3 BA 5 ASP B 166 ALA B 173 -1 O ASP B 166 N TRP B 163 SHEET 4 BA 5 CYS B 217 GLU B 221 -1 O LEU B 218 N LYS B 171 SHEET 5 BA 5 LEU B 206 CYS B 210 -1 N ARG B 207 O VAL B 219 SHEET 1 BB 3 GLY B 226 PRO B 227 0 SHEET 2 BB 3 ILE B 274 ILE B 276 -1 N ILE B 276 O GLY B 226 SHEET 3 BB 3 LEU B 290 ILE B 292 -1 O LYS B 291 N LEU B 275 SSBOND 1 CYS A 421 CYS B 421 1555 1555 2.06 CISPEP 1 GLU A 213 PRO A 214 0 1.97 CISPEP 2 GLU A 376 PRO A 377 0 17.60 CISPEP 3 GLU B 213 PRO B 214 0 3.28 CISPEP 4 GLU B 376 PRO B 377 0 18.60 CRYST1 96.930 96.930 416.950 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010317 0.005956 0.000000 0.00000 SCALE2 0.000000 0.011913 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002398 0.00000